RNA–Protein interactions for RNA: ENST00000394272.7

HDDC3-202, Transcript of HD domain containing 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HDDC3, Length 1,880 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-202ENST00000394272 WAPLQ7Z5K2 1190 aa27.87■■■□□ 2.05
HDDC3-202ENST00000394272 MINK1Q8N4C8 1332 aaPredicted RBP27.86■■■□□ 2.05
HDDC3-202ENST00000394272 ROBO2Q9HCK4 1378 aa27.83■■■□□ 2.05
HDDC3-202ENST00000394272 PIK3R4Q99570 1358 aa27.81■■■□□ 2.04
HDDC3-202ENST00000394272 XRN1Q8IZH2 1706 aaKnown RBP27.81■■■□□ 2.04
HDDC3-202ENST00000394272 KTN1Q86UP2 1357 aaKnown RBP27.8■■■□□ 2.04
HDDC3-202ENST00000394272 CABP2Q9NPB3 220 aa27.8■■■□□ 2.04
HDDC3-202ENST00000394272 PTCH1Q13635 1447 aa27.79■■■□□ 2.04
HDDC3-202ENST00000394272 AMOTL2Q9Y2J4 779 aa27.77■■■□□ 2.04
HDDC3-202ENST00000394272 ATAD2Q6PL18 1390 aa27.76■■■□□ 2.03
HDDC3-202ENST00000394272 NPHP4O75161 1426 aaPredicted RBP27.76■■■□□ 2.03
HDDC3-202ENST00000394272 SRPK2P78362 688 aaKnown RBP27.76■■■□□ 2.03
HDDC3-202ENST00000394272 CDK19Q9BWU1 502 aa27.75■■■□□ 2.03
HDDC3-202ENST00000394272 SLC12A5Q9H2X9 1139 aa27.75■■■□□ 2.03
HDDC3-202ENST00000394272 PARD3Q8TEW0 1356 aa27.75■■■□□ 2.03
HDDC3-202ENST00000394272 NINLQ9Y2I6 1382 aa27.75■■■□□ 2.03
HDDC3-202ENST00000394272 CHD2O14647 1828 aaKnown RBP27.75■■■□□ 2.03
HDDC3-202ENST00000394272 ADGRB2O60241 1585 aa27.74■■■□□ 2.03
HDDC3-202ENST00000394272 RALBP1Q15311 655 aa27.74■■■□□ 2.03
HDDC3-202ENST00000394272 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.74■■■□□ 2.03
HDDC3-202ENST00000394272 KNSTRNQ9Y448 316 aa27.74■■■□□ 2.03
HDDC3-202ENST00000394272 CNGB1Q14028 1251 aaPredicted RBP27.73■■■□□ 2.03
HDDC3-202ENST00000394272 TMC1Q8TDI8 760 aa27.73■■■□□ 2.03
HDDC3-202ENST00000394272 AMER1Q5JTC6 1135 aaPredicted RBP27.72■■■□□ 2.03
HDDC3-202ENST00000394272 YTHDC1Q96MU7 727 aaKnown RBP27.72■■■□□ 2.03
HDDC3-202ENST00000394272 CARD14Q9BXL6 1004 aa27.72■■■□□ 2.03
HDDC3-202ENST00000394272 NPC1L1Q9UHC9 1359 aa27.71■■■□□ 2.03
HDDC3-202ENST00000394272 WASLO00401 505 aaPredicted RBP27.7■■■□□ 2.03
HDDC3-202ENST00000394272 CCDC184Q52MB2 194 aa27.7■■■□□ 2.03
HDDC3-202ENST00000394272 ANKRD36BQ8N2N9 1353 aa27.69■■■□□ 2.02
HDDC3-202ENST00000394272 NCKAP5LQ9HCH0 1330 aa27.69■■■□□ 2.02
HDDC3-202ENST00000394272 CC2D1BQ5T0F9 858 aaKnown RBP27.68■■■□□ 2.02
HDDC3-202ENST00000394272 MYBBP1AQ9BQG0 1328 aaKnown RBP27.67■■■□□ 2.02
HDDC3-202ENST00000394272 USP32Q8NFA0 1604 aa27.66■■■□□ 2.02
HDDC3-202ENST00000394272 KCNA6P17658 529 aa27.66■■■□□ 2.02
HDDC3-202ENST00000394272 NSD3Q9BZ95 1437 aa27.65■■■□□ 2.02
HDDC3-202ENST00000394272 LMTK3Q96Q04 1460 aa27.64■■■□□ 2.01
HDDC3-202ENST00000394272 CD163L1Q9NR16 1453 aa27.64■■■□□ 2.01
HDDC3-202ENST00000394272 MRS2Q9HD23 443 aa27.63■■■□□ 2.01
HDDC3-202ENST00000394272 A0A1W2PP64 1363 aa27.62■■■□□ 2.01
HDDC3-202ENST00000394272 ATP7BP35670 1465 aa27.6■■■□□ 2.01
HDDC3-202ENST00000394272 NWD1Q149M9 1564 aa27.6■■■□□ 2.01
HDDC3-202ENST00000394272 BRD4O60885 1362 aaPredicted RBP27.59■■■□□ 2.01
HDDC3-202ENST00000394272 CABP1Q9NZU7 370 aa27.58■■■□□ 2.01
HDDC3-202ENST00000394272 HSPA2P54652 639 aa27.57■■■□□ 2
HDDC3-202ENST00000394272 NLRP13Q86W25 1043 aa27.57■■■□□ 2
HDDC3-202ENST00000394272 NUDT16Q96DE0 195 aaKnown RBP27.57■■■□□ 2
HDDC3-202ENST00000394272 TERF2IPQ9NYB0 399 aa27.57■■■□□ 2
HDDC3-202ENST00000394272 TOPAZ1Q8N9V7 1692 aa27.56■■■□□ 2
HDDC3-202ENST00000394272 PPIP5K1Q6PFW1 1433 aa27.56■■■□□ 2
HDDC3-202ENST00000394272 PRR36Q9H6K5 1346 aa27.55■■■□□ 2
HDDC3-202ENST00000394272 CCDC61Q9Y6R9 512 aa27.55■■■□□ 2
HDDC3-202ENST00000394272 CGNL1Q0VF96 1302 aa27.53■■■□□ 2
HDDC3-202ENST00000394272 NALCNQ8IZF0 1738 aa27.52■■■□□ 2
HDDC3-202ENST00000394272 HDGFL2Q7Z4V5 671 aaPredicted RBP27.52■■■□□ 2
HDDC3-202ENST00000394272 CPSF1Q10570 1443 aaKnown RBP27.52■■■□□ 2
HDDC3-202ENST00000394272 CDC42BPGQ6DT37 1551 aa27.52■■■□□ 2
HDDC3-202ENST00000394272 STRCQ7RTU9 1775 aa27.51■■□□□ 1.99
HDDC3-202ENST00000394272 NSD2O96028 1365 aa27.5■■□□□ 1.99
HDDC3-202ENST00000394272 CENPBP07199 599 aaPredicted RBP27.5■■□□□ 1.99
HDDC3-202ENST00000394272 AKAP12Q02952 1782 aa27.49■■□□□ 1.99
HDDC3-202ENST00000394272 PPP2R1AP30153 589 aa27.49■■□□□ 1.99
HDDC3-202ENST00000394272 ITSN1Q15811 1721 aa27.48■■□□□ 1.99
HDDC3-202ENST00000394272 MON2Q7Z3U7 1717 aa27.48■■□□□ 1.99
HDDC3-202ENST00000394272 FMN2Q9NZ56 1722 aa27.48■■□□□ 1.99
HDDC3-202ENST00000394272 PNISRQ8TF01 805 aaKnown RBP27.47■■□□□ 1.99
HDDC3-202ENST00000394272 NKTRP30414 1462 aaKnown RBP27.46■■□□□ 1.99
HDDC3-202ENST00000394272 RGPD8O14715 1765 aaPredicted RBP27.46■■□□□ 1.99
HDDC3-202ENST00000394272 ANKRD26Q9UPS8 1709 aa27.45■■□□□ 1.99
HDDC3-202ENST00000394272 FAM9BQ8IZU0 186 aa27.45■■□□□ 1.99
HDDC3-202ENST00000394272 ADGRL3Q9HAR2 1447 aa27.45■■□□□ 1.98
HDDC3-202ENST00000394272 KIF20BQ96Q89 1820 aa27.44■■□□□ 1.98
HDDC3-202ENST00000394272 ANKARQ7Z5J8 1434 aa27.43■■□□□ 1.98
HDDC3-202ENST00000394272 STRCP1A6NGW2 1772 aa27.43■■□□□ 1.98
HDDC3-202ENST00000394272 PLEKHG3A1L390 1219 aa27.43■■□□□ 1.98
HDDC3-202ENST00000394272 NUTM2FA1L443 756 aa27.42■■□□□ 1.98
HDDC3-202ENST00000394272 EDC4Q6P2E9 1401 aaKnown RBP27.42■■□□□ 1.98
HDDC3-202ENST00000394272 MORC1Q86VD1 984 aa27.41■■□□□ 1.98
HDDC3-202ENST00000394272 FYB1O15117 783 aa27.4■■□□□ 1.98
HDDC3-202ENST00000394272 RBM33Q96EV2 1170 aaKnown RBP27.4■■□□□ 1.98
HDDC3-202ENST00000394272 ZNF692Q9BU19 519 aaPredicted RBP27.39■■□□□ 1.98
HDDC3-202ENST00000394272 NRKQ7Z2Y5 1582 aa27.37■■□□□ 1.97
HDDC3-202ENST00000394272 ACEP12821 1306 aa27.36■■□□□ 1.97
HDDC3-202ENST00000394272 GGNBP2Q9H3C7 697 aa27.36■■□□□ 1.97
HDDC3-202ENST00000394272 PROSER2Q86WR7 435 aaPredicted RBP27.34■■□□□ 1.97
HDDC3-202ENST00000394272 POLR3AO14802 1390 aaPredicted RBP27.34■■□□□ 1.97
HDDC3-202ENST00000394272 HNRNPUQ00839 825 aaKnown RBP eCLIP27.33■■□□□ 1.97
HDDC3-202ENST00000394272 USP6P35125 1406 aa27.32■■□□□ 1.96
HDDC3-202ENST00000394272 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.32■■□□□ 1.96
HDDC3-202ENST00000394272 SSH2Q76I76 1423 aa27.3■■□□□ 1.96
HDDC3-202ENST00000394272 NCOA3Q9Y6Q9 1424 aa27.3■■□□□ 1.96
HDDC3-202ENST00000394272 TNNT2P45379 298 aaPredicted RBP27.3■■□□□ 1.96
HDDC3-202ENST00000394272 C14orf37Q86TY3 774 aa27.29■■□□□ 1.96
HDDC3-202ENST00000394272 PMFBP1Q8TBY8 1022 aa27.29■■□□□ 1.96
HDDC3-202ENST00000394272 INSRP06213 1382 aa27.28■■□□□ 1.96
HDDC3-202ENST00000394272 TMEM94Q12767 1356 aa27.27■■□□□ 1.96
HDDC3-202ENST00000394272 TTC21BQ7Z4L5 1316 aa27.26■■□□□ 1.95
HDDC3-202ENST00000394272 NME9Q86XW9 330 aa27.25■■□□□ 1.95
HDDC3-202ENST00000394272 C19orf44Q9H6X5 657 aa27.25■■□□□ 1.95
HDDC3-202ENST00000394272 NGDNQ8NEJ9 315 aaKnown RBP27.24■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms