RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 SCAF11Q99590 1463 aaKnown RBP14.79□□□□□ -0.04
CUX1-204ENST00000393824 SLIT1O75093 1534 aa14.79□□□□□ -0.04
CUX1-204ENST00000393824 IQGAP1P46940 1657 aa14.79□□□□□ -0.04
CUX1-204ENST00000393824 LAMC1P11047 1609 aa14.78□□□□□ -0.04
CUX1-204ENST00000393824 RTN4Q9NQC3 1192 aaKnown RBP14.78□□□□□ -0.04
CUX1-204ENST00000393824 ADAMTS13Q76LX8 1427 aa14.77□□□□□ -0.04
CUX1-204ENST00000393824 SETD1BQ9UPS6 1966 aaKnown RBP14.77□□□□□ -0.04
CUX1-204ENST00000393824 DISP3Q9P2K9 1392 aa14.77□□□□□ -0.04
CUX1-204ENST00000393824 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.76□□□□□ -0.05
CUX1-204ENST00000393824 SETBP1Q9Y6X0 1596 aa14.76□□□□□ -0.05
CUX1-204ENST00000393824 SETD1AO15047 1707 aaKnown RBP14.76□□□□□ -0.05
CUX1-204ENST00000393824 NEFMP07197 916 aa14.76□□□□□ -0.05
CUX1-204ENST00000393824 HSPA2P54652 639 aa14.76□□□□□ -0.05
CUX1-204ENST00000393824 SAFB2Q14151 953 aaKnown RBP eCLIP14.76□□□□□ -0.05
CUX1-204ENST00000393824 POLR3GLQ9BT43 218 aa14.76□□□□□ -0.05
CUX1-204ENST00000393824 PPM1GO15355 546 aaPredicted RBP14.75□□□□□ -0.05
CUX1-204ENST00000393824 ZNF142P52746 1687 aaPredicted RBP14.75□□□□□ -0.05
CUX1-204ENST00000393824 PLEKHG1Q9ULL1 1385 aa14.74□□□□□ -0.05
CUX1-204ENST00000393824 TCERG1O14776 1098 aaKnown RBP14.74□□□□□ -0.05
CUX1-204ENST00000393824 EID1Q9Y6B2 187 aa14.74□□□□□ -0.05
CUX1-204ENST00000393824 YTHDC2Q9H6S0 1430 aaKnown RBP14.73□□□□□ -0.05
CUX1-204ENST00000393824 DAXXQ9UER7 740 aaPredicted RBP14.72□□□□□ -0.05
CUX1-204ENST00000393824 MED14O60244 1454 aa14.72□□□□□ -0.05
CUX1-204ENST00000393824 PLEKHH1Q9ULM0 1364 aa14.72□□□□□ -0.05
CUX1-204ENST00000393824 WAPLQ7Z5K2 1190 aa14.71□□□□□ -0.05
CUX1-204ENST00000393824 NCKAP5LQ9HCH0 1330 aa14.71□□□□□ -0.05
CUX1-204ENST00000393824 HDGFP51858 240 aaKnown RBP14.71□□□□□ -0.05
CUX1-204ENST00000393824 PTPRUQ92729 1446 aa14.71□□□□□ -0.06
CUX1-204ENST00000393824 PRAM1Q96QH2 718 aa14.7□□□□□ -0.06
CUX1-204ENST00000393824 CENPJQ9HC77 1338 aaPredicted RBP14.7□□□□□ -0.06
CUX1-204ENST00000393824 ARHGEF28Q8N1W1 1705 aaKnown RBP14.69□□□□□ -0.06
CUX1-204ENST00000393824 ANKLE2Q86XL3 938 aa14.69□□□□□ -0.06
CUX1-204ENST00000393824 MS4A1P11836 297 aa14.69□□□□□ -0.06
CUX1-204ENST00000393824 LMTK3Q96Q04 1460 aa14.68□□□□□ -0.06
CUX1-204ENST00000393824 PDE4AP27815 886 aa14.68□□□□□ -0.06
CUX1-204ENST00000393824 BACH2Q9BYV9 841 aa14.68□□□□□ -0.06
CUX1-204ENST00000393824 LAS1LQ9Y4W2 734 aaKnown RBP14.68□□□□□ -0.06
CUX1-204ENST00000393824 EIF3AQ14152 1382 aaKnown RBP14.68□□□□□ -0.06
CUX1-204ENST00000393824 LRPPRCP42704 1394 aaKnown RBP14.67□□□□□ -0.06
CUX1-204ENST00000393824 ROBO2Q9HCK4 1378 aa14.67□□□□□ -0.06
CUX1-204ENST00000393824 GSE1Q14687 1217 aa14.66□□□□□ -0.06
CUX1-204ENST00000393824 ABCC11Q96J66 1382 aa14.66□□□□□ -0.06
CUX1-204ENST00000393824 MINK1Q8N4C8 1332 aaPredicted RBP14.65□□□□□ -0.06
CUX1-204ENST00000393824 TMF1P82094 1093 aa14.65□□□□□ -0.06
CUX1-204ENST00000393824 NPM2Q86SE8 214 aaKnown RBP14.65□□□□□ -0.06
CUX1-204ENST00000393824 RBM33Q96EV2 1170 aaKnown RBP14.65□□□□□ -0.06
CUX1-204ENST00000393824 TBX22Q9Y458 520 aa14.65□□□□□ -0.06
CUX1-204ENST00000393824 KTN1Q86UP2 1357 aaKnown RBP14.64□□□□□ -0.07
CUX1-204ENST00000393824 QRICH2Q9H0J4 1663 aa14.64□□□□□ -0.07
CUX1-204ENST00000393824 AMOTL2Q9Y2J4 779 aa14.64□□□□□ -0.07
CUX1-204ENST00000393824 POGKQ9P215 609 aa14.63□□□□□ -0.07
CUX1-204ENST00000393824 TULP4Q9NRJ4 1543 aa14.63□□□□□ -0.07
CUX1-204ENST00000393824 NPHP4O75161 1426 aaPredicted RBP14.63□□□□□ -0.07
CUX1-204ENST00000393824 KCNA6P17658 529 aa14.63□□□□□ -0.07
CUX1-204ENST00000393824 BRPF3Q9ULD4 1205 aa14.63□□□□□ -0.07
CUX1-204ENST00000393824 SBNO2Q9Y2G9 1366 aa14.62□□□□□ -0.07
CUX1-204ENST00000393824 TECPR2O15040 1411 aa14.62□□□□□ -0.07
CUX1-204ENST00000393824 CNGB1Q14028 1251 aaPredicted RBP14.61□□□□□ -0.07
CUX1-204ENST00000393824 DDRGK1Q96HY6 314 aa14.61□□□□□ -0.07
CUX1-204ENST00000393824 CABP2Q9NPB3 220 aa14.61□□□□□ -0.07
CUX1-204ENST00000393824 PNISRQ8TF01 805 aaKnown RBP14.61□□□□□ -0.07
CUX1-204ENST00000393824 DLC1Q96QB1 1528 aa14.59□□□□□ -0.07
CUX1-204ENST00000393824 RRP1P56182 461 aaKnown RBP14.59□□□□□ -0.07
CUX1-204ENST00000393824 PLEKHG5O94827 1062 aa14.59□□□□□ -0.07
CUX1-204ENST00000393824 CPS1P31327 1500 aa14.58□□□□□ -0.08
CUX1-204ENST00000393824 PODXL2Q9NZ53 605 aa14.58□□□□□ -0.08
CUX1-204ENST00000393824 BRD4O60885 1362 aaPredicted RBP14.57□□□□□ -0.08
CUX1-204ENST00000393824 EXOC6Q8TAG9 804 aa14.57□□□□□ -0.08
CUX1-204ENST00000393824 SLC12A5Q9H2X9 1139 aa14.57□□□□□ -0.08
CUX1-204ENST00000393824 PANK3Q9H999 370 aa14.57□□□□□ -0.08
CUX1-204ENST00000393824 DIP2AQ14689 1571 aa14.57□□□□□ -0.08
CUX1-204ENST00000393824 NFKBIBQ15653 356 aa14.57□□□□□ -0.08
CUX1-204ENST00000393824 MYOM1P52179 1685 aa14.56□□□□□ -0.08
CUX1-204ENST00000393824 PER1O15534 1290 aaPredicted RBP14.56□□□□□ -0.08
CUX1-204ENST00000393824 CDK19Q9BWU1 502 aa14.56□□□□□ -0.08
CUX1-204ENST00000393824 RSPH6AQ9H0K4 717 aa14.56□□□□□ -0.08
CUX1-204ENST00000393824 FAM135BQ49AJ0 1406 aa14.56□□□□□ -0.08
CUX1-204ENST00000393824 KNDC1Q76NI1 1749 aa14.56□□□□□ -0.08
CUX1-204ENST00000393824 XRN1Q8IZH2 1706 aaKnown RBP14.56□□□□□ -0.08
CUX1-204ENST00000393824 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.56□□□□□ -0.08
CUX1-204ENST00000393824 STRCQ7RTU9 1775 aa14.56□□□□□ -0.08
CUX1-204ENST00000393824 RALBP1Q15311 655 aa14.55□□□□□ -0.08
CUX1-204ENST00000393824 TMC1Q8TDI8 760 aa14.55□□□□□ -0.08
CUX1-204ENST00000393824 NUTM2FA1L443 756 aa14.55□□□□□ -0.08
CUX1-204ENST00000393824 SRPK2P78362 688 aaKnown RBP14.55□□□□□ -0.08
CUX1-204ENST00000393824 EVC2Q86UK5 1308 aa14.55□□□□□ -0.08
CUX1-204ENST00000393824 PTCH1Q13635 1447 aa14.53□□□□□ -0.08
CUX1-204ENST00000393824 PDE3BQ13370 1112 aa14.53□□□□□ -0.08
CUX1-204ENST00000393824 FRAT1Q92837 279 aaPredicted RBP14.53□□□□□ -0.08
CUX1-204ENST00000393824 SIRT1Q96EB6 747 aa14.53□□□□□ -0.08
CUX1-204ENST00000393824 CARD14Q9BXL6 1004 aa14.53□□□□□ -0.08
CUX1-204ENST00000393824 MYBBP1AQ9BQG0 1328 aaKnown RBP14.52□□□□□ -0.08
CUX1-204ENST00000393824 FAM43AQ8N2R8 423 aa14.52□□□□□ -0.08
CUX1-204ENST00000393824 RCAN3Q9UKA8 241 aa14.52□□□□□ -0.08
CUX1-204ENST00000393824 PIK3R4Q99570 1358 aa14.52□□□□□ -0.09
CUX1-204ENST00000393824 PRR36Q9H6K5 1346 aa14.52□□□□□ -0.09
CUX1-204ENST00000393824 CHD2O14647 1828 aaKnown RBP14.52□□□□□ -0.09
CUX1-204ENST00000393824 WASLO00401 505 aaPredicted RBP14.52□□□□□ -0.09
CUX1-204ENST00000393824 INSRP06213 1382 aa14.51□□□□□ -0.09
CUX1-204ENST00000393824 CDCA8Q53HL2 280 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms