RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 TULP4Q9NRJ4 1543 aa24.74■■□□□ 1.55
CCDC88C-203ENST00000389856 PER1O15534 1290 aaPredicted RBP24.74■■□□□ 1.55
CCDC88C-203ENST00000389856 MED14O60244 1454 aa24.73■■□□□ 1.55
CCDC88C-203ENST00000389856 TBX22Q9Y458 520 aa24.73■■□□□ 1.55
CCDC88C-203ENST00000389856 ANKLE2Q86XL3 938 aa24.72■■□□□ 1.55
CCDC88C-203ENST00000389856 ATAD2Q6PL18 1390 aa24.72■■□□□ 1.55
CCDC88C-203ENST00000389856 NPC1L1Q9UHC9 1359 aa24.69■■□□□ 1.54
CCDC88C-203ENST00000389856 SAFB2Q14151 953 aaKnown RBP eCLIP24.69■■□□□ 1.54
CCDC88C-203ENST00000389856 MYBBP1AQ9BQG0 1328 aaKnown RBP24.69■■□□□ 1.54
CCDC88C-203ENST00000389856 PARD3Q8TEW0 1356 aa24.68■■□□□ 1.54
CCDC88C-203ENST00000389856 PIK3R4Q99570 1358 aa24.68■■□□□ 1.54
CCDC88C-203ENST00000389856 SRPK2P78362 688 aaKnown RBP24.68■■□□□ 1.54
CCDC88C-203ENST00000389856 MRS2Q9HD23 443 aa24.68■■□□□ 1.54
CCDC88C-203ENST00000389856 MINK1Q8N4C8 1332 aaPredicted RBP24.67■■□□□ 1.54
CCDC88C-203ENST00000389856 TMC1Q8TDI8 760 aa24.66■■□□□ 1.54
CCDC88C-203ENST00000389856 BRD4O60885 1362 aaPredicted RBP24.63■■□□□ 1.53
CCDC88C-203ENST00000389856 SLC26A8Q96RN1 970 aa24.63■■□□□ 1.53
CCDC88C-203ENST00000389856 KDM4FA0A1W2PPD8 638 aa24.62■■□□□ 1.53
CCDC88C-203ENST00000389856 PTCH1Q13635 1447 aa24.62■■□□□ 1.53
CCDC88C-203ENST00000389856 CNGB1Q14028 1251 aaPredicted RBP24.61■■□□□ 1.53
CCDC88C-203ENST00000389856 USP32Q8NFA0 1604 aa24.61■■□□□ 1.53
CCDC88C-203ENST00000389856 ANKRD36BQ8N2N9 1353 aa24.61■■□□□ 1.53
CCDC88C-203ENST00000389856 WAPLQ7Z5K2 1190 aa24.61■■□□□ 1.53
CCDC88C-203ENST00000389856 NLRP13Q86W25 1043 aa24.61■■□□□ 1.53
CCDC88C-203ENST00000389856 CABP2Q9NPB3 220 aa24.61■■□□□ 1.53
CCDC88C-203ENST00000389856 CDK19Q9BWU1 502 aa24.6■■□□□ 1.53
CCDC88C-203ENST00000389856 ADGRB2O60241 1585 aa24.59■■□□□ 1.53
CCDC88C-203ENST00000389856 PLEKHH1Q9ULM0 1364 aa24.59■■□□□ 1.53
CCDC88C-203ENST00000389856 CC2D1BQ5T0F9 858 aaKnown RBP24.59■■□□□ 1.53
CCDC88C-203ENST00000389856 AMER1Q5JTC6 1135 aaPredicted RBP24.58■■□□□ 1.53
CCDC88C-203ENST00000389856 TERF2IPQ9NYB0 399 aa24.58■■□□□ 1.53
CCDC88C-203ENST00000389856 XRN1Q8IZH2 1706 aaKnown RBP24.57■■□□□ 1.52
CCDC88C-203ENST00000389856 ROBO2Q9HCK4 1378 aa24.57■■□□□ 1.52
CCDC88C-203ENST00000389856 SLC12A5Q9H2X9 1139 aa24.57■■□□□ 1.52
CCDC88C-203ENST00000389856 AMOTL2Q9Y2J4 779 aa24.57■■□□□ 1.52
CCDC88C-203ENST00000389856 WASLO00401 505 aaPredicted RBP24.56■■□□□ 1.52
CCDC88C-203ENST00000389856 SUPT16HQ9Y5B9 1047 aaKnown RBP24.55■■□□□ 1.52
CCDC88C-203ENST00000389856 NSD3Q9BZ95 1437 aa24.55■■□□□ 1.52
CCDC88C-203ENST00000389856 NPHP4O75161 1426 aaPredicted RBP24.54■■□□□ 1.52
CCDC88C-203ENST00000389856 PTPRUQ92729 1446 aa24.54■■□□□ 1.52
CCDC88C-203ENST00000389856 NSD2O96028 1365 aa24.54■■□□□ 1.52
CCDC88C-203ENST00000389856 HDGFL2Q7Z4V5 671 aaPredicted RBP24.53■■□□□ 1.52
CCDC88C-203ENST00000389856 CGNL1Q0VF96 1302 aa24.53■■□□□ 1.52
CCDC88C-203ENST00000389856 ATP7BP35670 1465 aa24.52■■□□□ 1.52
CCDC88C-203ENST00000389856 CARD14Q9BXL6 1004 aa24.52■■□□□ 1.52
CCDC88C-203ENST00000389856 CHD2O14647 1828 aaKnown RBP24.5■■□□□ 1.51
CCDC88C-203ENST00000389856 CCDC184Q52MB2 194 aa24.5■■□□□ 1.51
CCDC88C-203ENST00000389856 FAM9BQ8IZU0 186 aa24.48■■□□□ 1.51
CCDC88C-203ENST00000389856 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.48■■□□□ 1.51
CCDC88C-203ENST00000389856 A0A1W2PP64 1363 aa24.47■■□□□ 1.51
CCDC88C-203ENST00000389856 CCDC61Q9Y6R9 512 aa24.45■■□□□ 1.5
CCDC88C-203ENST00000389856 NUDT16Q96DE0 195 aaKnown RBP24.44■■□□□ 1.5
CCDC88C-203ENST00000389856 PPIP5K1Q6PFW1 1433 aa24.44■■□□□ 1.5
CCDC88C-203ENST00000389856 PPP2R1AP30153 589 aa24.43■■□□□ 1.5
CCDC88C-203ENST00000389856 PNISRQ8TF01 805 aaKnown RBP24.43■■□□□ 1.5
CCDC88C-203ENST00000389856 CABP1Q9NZU7 370 aa24.43■■□□□ 1.5
CCDC88C-203ENST00000389856 MORC1Q86VD1 984 aa24.43■■□□□ 1.5
CCDC88C-203ENST00000389856 ITSN1Q15811 1721 aa24.42■■□□□ 1.5
CCDC88C-203ENST00000389856 HNRNPUQ00839 825 aaKnown RBP eCLIP24.42■■□□□ 1.5
CCDC88C-203ENST00000389856 CD163L1Q9NR16 1453 aa24.42■■□□□ 1.5
CCDC88C-203ENST00000389856 CDC42BPGQ6DT37 1551 aa24.42■■□□□ 1.5
CCDC88C-203ENST00000389856 KCNA6P17658 529 aa24.41■■□□□ 1.5
CCDC88C-203ENST00000389856 NEFLP07196 543 aa24.4■■□□□ 1.5
CCDC88C-203ENST00000389856 ANKRD26Q9UPS8 1709 aa24.4■■□□□ 1.5
CCDC88C-203ENST00000389856 INSRP06213 1382 aa24.39■■□□□ 1.5
CCDC88C-203ENST00000389856 NCKAP5LQ9HCH0 1330 aa24.39■■□□□ 1.5
CCDC88C-203ENST00000389856 TOPAZ1Q8N9V7 1692 aa24.39■■□□□ 1.5
CCDC88C-203ENST00000389856 ZNF692Q9BU19 519 aaPredicted RBP24.39■■□□□ 1.49
CCDC88C-203ENST00000389856 NWD1Q149M9 1564 aa24.38■■□□□ 1.49
CCDC88C-203ENST00000389856 KIF20BQ96Q89 1820 aa24.38■■□□□ 1.49
CCDC88C-203ENST00000389856 ANKARQ7Z5J8 1434 aa24.37■■□□□ 1.49
CCDC88C-203ENST00000389856 AKAP12Q02952 1782 aa24.36■■□□□ 1.49
CCDC88C-203ENST00000389856 CPSF1Q10570 1443 aaKnown RBP24.36■■□□□ 1.49
CCDC88C-203ENST00000389856 EDC4Q6P2E9 1401 aaKnown RBP24.36■■□□□ 1.49
CCDC88C-203ENST00000389856 MON2Q7Z3U7 1717 aa24.35■■□□□ 1.49
CCDC88C-203ENST00000389856 NKTRP30414 1462 aaKnown RBP24.33■■□□□ 1.49
CCDC88C-203ENST00000389856 FMN2Q9NZ56 1722 aa24.32■■□□□ 1.48
CCDC88C-203ENST00000389856 PLEKHG3A1L390 1219 aa24.32■■□□□ 1.48
CCDC88C-203ENST00000389856 WDR43Q15061 677 aaKnown RBP eCLIP24.32■■□□□ 1.48
CCDC88C-203ENST00000389856 ZBED9Q6R2W3 1325 aa24.31■■□□□ 1.48
CCDC88C-203ENST00000389856 PRR36Q9H6K5 1346 aa24.3■■□□□ 1.48
CCDC88C-203ENST00000389856 ADGRL3Q9HAR2 1447 aa24.3■■□□□ 1.48
CCDC88C-203ENST00000389856 NALCNQ8IZF0 1738 aa24.29■■□□□ 1.48
CCDC88C-203ENST00000389856 POLR3AO14802 1390 aaPredicted RBP24.29■■□□□ 1.48
CCDC88C-203ENST00000389856 CFAP53Q96M91 514 aa24.29■■□□□ 1.48
CCDC88C-203ENST00000389856 LMTK3Q96Q04 1460 aa24.28■■□□□ 1.48
CCDC88C-203ENST00000389856 FYB1O15117 783 aa24.27■■□□□ 1.48
CCDC88C-203ENST00000389856 FKBP8Q14318 412 aa24.25■■□□□ 1.47
CCDC88C-203ENST00000389856 GGNBP2Q9H3C7 697 aa24.24■■□□□ 1.47
CCDC88C-203ENST00000389856 C14orf37Q86TY3 774 aa24.24■■□□□ 1.47
CCDC88C-203ENST00000389856 BLMP54132 1417 aaPredicted RBP24.23■■□□□ 1.47
CCDC88C-203ENST00000389856 ERICH6BQ5W0A0 696 aa24.23■■□□□ 1.47
CCDC88C-203ENST00000389856 ACEP12821 1306 aa24.23■■□□□ 1.47
CCDC88C-203ENST00000389856 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.22■■□□□ 1.47
CCDC88C-203ENST00000389856 TNNT2P45379 298 aaPredicted RBP24.21■■□□□ 1.47
CCDC88C-203ENST00000389856 PROSER2Q86WR7 435 aaPredicted RBP24.21■■□□□ 1.47
CCDC88C-203ENST00000389856 NCOA3Q9Y6Q9 1424 aa24.21■■□□□ 1.47
CCDC88C-203ENST00000389856 NRKQ7Z2Y5 1582 aa24.21■■□□□ 1.47
CCDC88C-203ENST00000389856 USP6P35125 1406 aa24.21■■□□□ 1.47
CCDC88C-203ENST00000389856 NUTM2FA1L443 756 aa24.2■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms