RNA–Protein interactions for RNA: ENST00000356147.3

PTPRA-203, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,135 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-203ENST00000356147 NSD3Q9BZ95 1437 aa12.87□□□□□ -0.35
PTPRA-203ENST00000356147 ERVK-7P63135 1459 aa12.87□□□□□ -0.35
PTPRA-203ENST00000356147 TRAK2O60296 914 aa12.86□□□□□ -0.35
PTPRA-203ENST00000356147 IQGAP1P46940 1657 aa12.86□□□□□ -0.35
PTPRA-203ENST00000356147 MYOM1P52179 1685 aa12.86□□□□□ -0.35
PTPRA-203ENST00000356147 DUOX2Q9NRD8 1548 aa12.86□□□□□ -0.35
PTPRA-203ENST00000356147 ITPRIPQ8IWB1 547 aa12.86□□□□□ -0.35
PTPRA-203ENST00000356147 SMC4Q9NTJ3 1288 aa12.85□□□□□ -0.35
PTPRA-203ENST00000356147 U2SURPO15042 1029 aaKnown RBP12.85□□□□□ -0.35
PTPRA-203ENST00000356147 MVPQ14764 893 aaKnown RBP12.84□□□□□ -0.35
PTPRA-203ENST00000356147 NPC1L1Q9UHC9 1359 aa12.84□□□□□ -0.35
PTPRA-203ENST00000356147 EXOSC9Q06265 439 aaKnown RBP12.84□□□□□ -0.35
PTPRA-203ENST00000356147 DZIP1LQ8IYY4 767 aaKnown RBP12.84□□□□□ -0.35
PTPRA-203ENST00000356147 PNNQ9H307 717 aaKnown RBP12.83□□□□□ -0.36
PTPRA-203ENST00000356147 ZKSCAN2Q63HK3 967 aa12.83□□□□□ -0.36
PTPRA-203ENST00000356147 CLTCL1P53675 1640 aa12.83□□□□□ -0.36
PTPRA-203ENST00000356147 POLR3AO14802 1390 aaPredicted RBP12.83□□□□□ -0.36
PTPRA-203ENST00000356147 LNPKQ9C0E8 428 aa12.82□□□□□ -0.36
PTPRA-203ENST00000356147 TRIM27P14373 513 aa12.82□□□□□ -0.36
PTPRA-203ENST00000356147 CHMP5Q9NZZ3 219 aa12.82□□□□□ -0.36
PTPRA-203ENST00000356147 VIRMAQ69YN4 1812 aaKnown RBP12.82□□□□□ -0.36
PTPRA-203ENST00000356147 ERCC6L2Q5T890 1561 aa12.81□□□□□ -0.36
PTPRA-203ENST00000356147 SSH1Q8WYL5 1049 aa12.81□□□□□ -0.36
PTPRA-203ENST00000356147 KDM5AP29375 1690 aaKnown RBP12.81□□□□□ -0.36
PTPRA-203ENST00000356147 FSD2A1L4K1 749 aa12.81□□□□□ -0.36
PTPRA-203ENST00000356147 SCAPERQ9BY12 1400 aa12.81□□□□□ -0.36
PTPRA-203ENST00000356147 HSCBQ8IWL3 235 aa12.8□□□□□ -0.36
PTPRA-203ENST00000356147 NINLQ9Y2I6 1382 aa12.8□□□□□ -0.36
PTPRA-203ENST00000356147 WDR63Q8IWG1 891 aa12.8□□□□□ -0.36
PTPRA-203ENST00000356147 NOB1Q9ULX3 412 aaKnown RBP12.8□□□□□ -0.36
PTPRA-203ENST00000356147 PLXNC1O60486 1568 aa12.8□□□□□ -0.36
PTPRA-203ENST00000356147 TMEM57Q8N5G2 664 aa12.79□□□□□ -0.36
PTPRA-203ENST00000356147 MYH16Q9H6N6 1097 aa12.79□□□□□ -0.36
PTPRA-203ENST00000356147 CEP152O94986 1710 aa12.79□□□□□ -0.36
PTPRA-203ENST00000356147 CFAP53Q96M91 514 aa12.79□□□□□ -0.36
PTPRA-203ENST00000356147 ERBB4Q15303 1308 aa12.78□□□□□ -0.36
PTPRA-203ENST00000356147 C1orf115Q9H7X2 142 aa12.78□□□□□ -0.36
PTPRA-203ENST00000356147 CABP2Q9NPB3 220 aa12.78□□□□□ -0.36
PTPRA-203ENST00000356147 GAS2L3Q86XJ1 694 aa12.78□□□□□ -0.36
PTPRA-203ENST00000356147 NGEFQ8N5V2 710 aa12.78□□□□□ -0.36
PTPRA-203ENST00000356147 PHF23Q9BUL5 403 aaPredicted RBP12.78□□□□□ -0.36
PTPRA-203ENST00000356147 GGNBP2Q9H3C7 697 aa12.78□□□□□ -0.36
PTPRA-203ENST00000356147 GRPEL1Q9HAV7 217 aa12.78□□□□□ -0.36
PTPRA-203ENST00000356147 PLCH2O75038 1416 aa12.78□□□□□ -0.36
PTPRA-203ENST00000356147 TRPM2O94759 1503 aa12.77□□□□□ -0.36
PTPRA-203ENST00000356147 RBM42Q9BTD8 480 aaKnown RBP12.77□□□□□ -0.36
PTPRA-203ENST00000356147 SPHKAPQ2M3C7 1700 aa12.77□□□□□ -0.36
PTPRA-203ENST00000356147 RTEL1-TNFRSF6BF6WH68 1400 aa12.77□□□□□ -0.37
PTPRA-203ENST00000356147 PTPRTO14522 1441 aa12.77□□□□□ -0.37
PTPRA-203ENST00000356147 CD2BP2O95400 341 aaKnown RBP12.77□□□□□ -0.37
PTPRA-203ENST00000356147 HSP90AA1P07900 732 aaKnown RBP12.77□□□□□ -0.37
PTPRA-203ENST00000356147 HSP90AB1P08238 724 aaKnown RBP12.76□□□□□ -0.37
PTPRA-203ENST00000356147 FBLN1P23142 703 aa12.76□□□□□ -0.37
PTPRA-203ENST00000356147 NOS1P29475 1434 aa12.76□□□□□ -0.37
PTPRA-203ENST00000356147 TNPO1Q92973 898 aaKnown RBP12.76□□□□□ -0.37
PTPRA-203ENST00000356147 ZNF692Q9BU19 519 aaPredicted RBP12.76□□□□□ -0.37
PTPRA-203ENST00000356147 KANK1Q14678 1352 aa12.76□□□□□ -0.37
PTPRA-203ENST00000356147 STK26Q9P289 416 aa12.75□□□□□ -0.37
PTPRA-203ENST00000356147 ELL2O00472 640 aaPredicted RBP12.75□□□□□ -0.37
PTPRA-203ENST00000356147 ATF7IPQ6VMQ6 1270 aa12.75□□□□□ -0.37
PTPRA-203ENST00000356147 CLCN1P35523 988 aa12.74□□□□□ -0.37
PTPRA-203ENST00000356147 MRE11P49959 708 aa12.74□□□□□ -0.37
PTPRA-203ENST00000356147 GGT6Q6P531 493 aa12.74□□□□□ -0.37
PTPRA-203ENST00000356147 CFAP65Q6ZU64 1925 aaKnown RBP12.74□□□□□ -0.37
PTPRA-203ENST00000356147 ABCA6Q8N139 1617 aa12.74□□□□□ -0.37
PTPRA-203ENST00000356147 TMPOP42166 694 aaKnown RBP12.73□□□□□ -0.37
PTPRA-203ENST00000356147 VSIG10Q8N0Z9 540 aa12.73□□□□□ -0.37
PTPRA-203ENST00000356147 TRIM35Q9UPQ4 493 aa12.73□□□□□ -0.37
PTPRA-203ENST00000356147 SHPRHQ149N8 1683 aa12.73□□□□□ -0.37
PTPRA-203ENST00000356147 IQSEC2Q5JU85 1478 aa12.73□□□□□ -0.37
PTPRA-203ENST00000356147 ANKRD45Q5TZF3 282 aa12.73□□□□□ -0.37
PTPRA-203ENST00000356147 DDX19BQ9UMR2 479 aa12.73□□□□□ -0.37
PTPRA-203ENST00000356147 THUMPD2Q9BTF0 503 aaKnown RBP12.73□□□□□ -0.37
PTPRA-203ENST00000356147 ESPNB1AK53 854 aa12.72□□□□□ -0.37
PTPRA-203ENST00000356147 RIPK4P57078 832 aa12.72□□□□□ -0.37
PTPRA-203ENST00000356147 STAC3Q96MF2 364 aa12.72□□□□□ -0.37
PTPRA-203ENST00000356147 TRIM44Q96DX7 344 aaPredicted RBP12.72□□□□□ -0.37
PTPRA-203ENST00000356147 ABCC1P33527 1531 aa12.71□□□□□ -0.37
PTPRA-203ENST00000356147 DDX11L8A8MPP1 907 aa12.71□□□□□ -0.37
PTPRA-203ENST00000356147 ZNF518AQ6AHZ1 1483 aa12.71□□□□□ -0.37
PTPRA-203ENST00000356147 HDAC1Q13547 482 aaPredicted RBP12.71□□□□□ -0.37
PTPRA-203ENST00000356147 AAMPQ13685 434 aa12.71□□□□□ -0.37
PTPRA-203ENST00000356147 HSP90AA2PQ14568 343 aaPredicted RBP12.71□□□□□ -0.37
PTPRA-203ENST00000356147 CCDC27Q2M243 656 aa12.71□□□□□ -0.37
PTPRA-203ENST00000356147 SMC5Q8IY18 1101 aa12.71□□□□□ -0.37
PTPRA-203ENST00000356147 ZBTB40Q9NUA8 1239 aa12.71□□□□□ -0.38
PTPRA-203ENST00000356147 SSFA2P28290 1259 aa12.7□□□□□ -0.38
PTPRA-203ENST00000356147 CD109Q6YHK3 1445 aa12.7□□□□□ -0.38
PTPRA-203ENST00000356147 SRPK2P78362 688 aaKnown RBP12.7□□□□□ -0.38
PTPRA-203ENST00000356147 MAP3K4Q9Y6R4 1608 aa12.7□□□□□ -0.38
PTPRA-203ENST00000356147 CHD1LQ86WJ1 897 aa12.69□□□□□ -0.38
PTPRA-203ENST00000356147 KIF2CQ99661 725 aa12.68□□□□□ -0.38
PTPRA-203ENST00000356147 ZFYVE16Q7Z3T8 1539 aa12.68□□□□□ -0.38
PTPRA-203ENST00000356147 NCLP19338 710 aaKnown RBP12.68□□□□□ -0.38
PTPRA-203ENST00000356147 NUCB1Q02818 461 aa12.68□□□□□ -0.38
PTPRA-203ENST00000356147 GAS2L2Q8NHY3 880 aa12.68□□□□□ -0.38
PTPRA-203ENST00000356147 PLEKHF1Q96S99 279 aa12.68□□□□□ -0.38
PTPRA-203ENST00000356147 C14orf93Q9H972 538 aaKnown RBP12.67□□□□□ -0.38
PTPRA-203ENST00000356147 HMOX1P09601 288 aa12.66□□□□□ -0.38
PTPRA-203ENST00000356147 DDIT3P35638 169 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 101.5 ms