RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 DAXXQ9UER7 740 aaPredicted RBP20.71■□□□□ 0.91
HMGA1-202ENST00000347617 A2ML1A8K2U0 1454 aa20.7■□□□□ 0.9
HMGA1-202ENST00000347617 MYO5BQ9ULV0 1848 aa20.7■□□□□ 0.9
HMGA1-202ENST00000347617 KDM5AP29375 1690 aaKnown RBP20.7■□□□□ 0.9
HMGA1-202ENST00000347617 STAG3Q9UJ98 1225 aa20.69■□□□□ 0.9
HMGA1-202ENST00000347617 CENPQQ7L2Z9 268 aaPredicted RBP20.68■□□□□ 0.9
HMGA1-202ENST00000347617 PUS7Q96PZ0 661 aaKnown RBP20.68■□□□□ 0.9
HMGA1-202ENST00000347617 CENPJQ9HC77 1338 aaPredicted RBP20.67■□□□□ 0.9
HMGA1-202ENST00000347617 NFKBIBQ15653 356 aa20.67■□□□□ 0.9
HMGA1-202ENST00000347617 VIRMAQ69YN4 1812 aaKnown RBP20.67■□□□□ 0.9
HMGA1-202ENST00000347617 HDGFP51858 240 aaKnown RBP20.66■□□□□ 0.9
HMGA1-202ENST00000347617 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.66■□□□□ 0.9
HMGA1-202ENST00000347617 TNRQ92752 1358 aa20.65■□□□□ 0.9
HMGA1-202ENST00000347617 KDM2BQ8NHM5 1336 aa20.65■□□□□ 0.9
HMGA1-202ENST00000347617 CNGB1Q14028 1251 aaPredicted RBP20.64■□□□□ 0.9
HMGA1-202ENST00000347617 FAM161AQ3B820 660 aa20.63■□□□□ 0.89
HMGA1-202ENST00000347617 CRBNQ96SW2 442 aa20.63■□□□□ 0.89
HMGA1-202ENST00000347617 PANK3Q9H999 370 aa20.63■□□□□ 0.89
HMGA1-202ENST00000347617 RIMS2Q9UQ26 1411 aa20.62■□□□□ 0.89
HMGA1-202ENST00000347617 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.62■□□□□ 0.89
HMGA1-202ENST00000347617 TMEM132EQ6IEE7 984 aa20.61■□□□□ 0.89
HMGA1-202ENST00000347617 TRAK1Q9UPV9 953 aa20.61■□□□□ 0.89
HMGA1-202ENST00000347617 NLRP1Q9C000 1473 aa20.61■□□□□ 0.89
HMGA1-202ENST00000347617 NPC1L1Q9UHC9 1359 aa20.59■□□□□ 0.89
HMGA1-202ENST00000347617 ALKQ9UM73 1620 aa20.59■□□□□ 0.89
HMGA1-202ENST00000347617 RTN4Q9NQC3 1192 aaKnown RBP20.59■□□□□ 0.89
HMGA1-202ENST00000347617 NUTM2DQ5VT03 806 aaPredicted RBP20.58■□□□□ 0.89
HMGA1-202ENST00000347617 QRICH2Q9H0J4 1663 aa20.57■□□□□ 0.88
HMGA1-202ENST00000347617 ARHGEF28Q8N1W1 1705 aaKnown RBP20.57■□□□□ 0.88
HMGA1-202ENST00000347617 UBE2Q2Q8WVN8 375 aa20.57■□□□□ 0.88
HMGA1-202ENST00000347617 ASXL1Q8IXJ9 1541 aa20.56■□□□□ 0.88
HMGA1-202ENST00000347617 FAM43AQ8N2R8 423 aa20.56■□□□□ 0.88
HMGA1-202ENST00000347617 CDCA7LQ96GN5 454 aa20.55■□□□□ 0.88
HMGA1-202ENST00000347617 MYOM1P52179 1685 aa20.55■□□□□ 0.88
HMGA1-202ENST00000347617 YTHDC2Q9H6S0 1430 aaKnown RBP20.55■□□□□ 0.88
HMGA1-202ENST00000347617 FRAT1Q92837 279 aaPredicted RBP20.54■□□□□ 0.88
HMGA1-202ENST00000347617 RSPH6AQ9H0K4 717 aa20.54■□□□□ 0.88
HMGA1-202ENST00000347617 KNSTRNQ9Y448 316 aa20.54■□□□□ 0.88
HMGA1-202ENST00000347617 BRPF3Q9ULD4 1205 aa20.53■□□□□ 0.88
HMGA1-202ENST00000347617 EVC2Q86UK5 1308 aa20.53■□□□□ 0.88
HMGA1-202ENST00000347617 TMEM2Q9UHN6 1383 aa20.53■□□□□ 0.88
HMGA1-202ENST00000347617 DLC1Q96QB1 1528 aa20.53■□□□□ 0.88
HMGA1-202ENST00000347617 UBR1Q8IWV7 1749 aa20.53■□□□□ 0.88
HMGA1-202ENST00000347617 FER1L4A9Z1Z3 1794 aa20.52■□□□□ 0.88
HMGA1-202ENST00000347617 C3P01024 1663 aa20.51■□□□□ 0.87
HMGA1-202ENST00000347617 SIRT1Q96EB6 747 aa20.51■□□□□ 0.87
HMGA1-202ENST00000347617 PTPRMP28827 1452 aa20.5■□□□□ 0.87
HMGA1-202ENST00000347617 ABCC11Q96J66 1382 aa20.5■□□□□ 0.87
HMGA1-202ENST00000347617 C8orf34Q49A92 452 aa20.5■□□□□ 0.87
HMGA1-202ENST00000347617 AMER1Q5JTC6 1135 aaPredicted RBP20.5■□□□□ 0.87
HMGA1-202ENST00000347617 SETD1AO15047 1707 aaKnown RBP20.49■□□□□ 0.87
HMGA1-202ENST00000347617 SENP3-EIF4A1A0A087X0R7 540 aa20.49■□□□□ 0.87
HMGA1-202ENST00000347617 PLIN1O60240 522 aa20.49■□□□□ 0.87
HMGA1-202ENST00000347617 NINLQ9Y2I6 1382 aa20.48■□□□□ 0.87
HMGA1-202ENST00000347617 NRXN3Q9Y4C0 1643 aa20.46■□□□□ 0.87
HMGA1-202ENST00000347617 SLIT1O75093 1534 aa20.45■□□□□ 0.86
HMGA1-202ENST00000347617 NGEFQ8N5V2 710 aa20.44■□□□□ 0.86
HMGA1-202ENST00000347617 TULP4Q9NRJ4 1543 aa20.44■□□□□ 0.86
HMGA1-202ENST00000347617 ARHGAP23Q9P227 1491 aa20.44■□□□□ 0.86
HMGA1-202ENST00000347617 ZNF521Q96K83 1311 aa20.44■□□□□ 0.86
HMGA1-202ENST00000347617 STK26Q9P289 416 aa20.44■□□□□ 0.86
HMGA1-202ENST00000347617 PLEKHG1Q9ULL1 1385 aa20.44■□□□□ 0.86
HMGA1-202ENST00000347617 CEBPAP49715 358 aaPredicted RBP20.43■□□□□ 0.86
HMGA1-202ENST00000347617 CC2D1BQ5T0F9 858 aaKnown RBP20.43■□□□□ 0.86
HMGA1-202ENST00000347617 DUSP27Q5VZP5 1158 aa20.43■□□□□ 0.86
HMGA1-202ENST00000347617 POGKQ9P215 609 aa20.43■□□□□ 0.86
HMGA1-202ENST00000347617 GOLGA2Q08379 1002 aa20.42■□□□□ 0.86
HMGA1-202ENST00000347617 THEMISQ8N1K5 641 aaPredicted RBP20.42■□□□□ 0.86
HMGA1-202ENST00000347617 PRAM1Q96QH2 718 aa20.42■□□□□ 0.86
HMGA1-202ENST00000347617 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.42■□□□□ 0.86
HMGA1-202ENST00000347617 TECPR2O15040 1411 aa20.42■□□□□ 0.86
HMGA1-202ENST00000347617 FAM135BQ49AJ0 1406 aa20.41■□□□□ 0.86
HMGA1-202ENST00000347617 ATAD2Q6PL18 1390 aa20.41■□□□□ 0.86
HMGA1-202ENST00000347617 BECN1Q14457 450 aa20.41■□□□□ 0.86
HMGA1-202ENST00000347617 WDR43Q15061 677 aaKnown RBP eCLIP20.41■□□□□ 0.86
HMGA1-202ENST00000347617 L1TD1Q5T7N2 865 aaKnown RBP20.41■□□□□ 0.86
HMGA1-202ENST00000347617 CARD14Q9BXL6 1004 aa20.41■□□□□ 0.86
HMGA1-202ENST00000347617 EID1Q9Y6B2 187 aa20.41■□□□□ 0.86
HMGA1-202ENST00000347617 KNDC1Q76NI1 1749 aa20.39■□□□□ 0.86
HMGA1-202ENST00000347617 C20orf194Q5TEA3 1177 aa20.39■□□□□ 0.85
HMGA1-202ENST00000347617 USP32Q8NFA0 1604 aa20.39■□□□□ 0.85
HMGA1-202ENST00000347617 MAPK8IP3Q9UPT6 1336 aa20.38■□□□□ 0.85
HMGA1-202ENST00000347617 ANKRD36BQ8N2N9 1353 aa20.38■□□□□ 0.85
HMGA1-202ENST00000347617 FRAT2O75474 233 aaPredicted RBP20.38■□□□□ 0.85
HMGA1-202ENST00000347617 MED14O60244 1454 aa20.38■□□□□ 0.85
HMGA1-202ENST00000347617 METP08581 1390 aa20.38■□□□□ 0.85
HMGA1-202ENST00000347617 ADAMTSL3P82987 1691 aa20.37■□□□□ 0.85
HMGA1-202ENST00000347617 AAMPQ13685 434 aa20.37■□□□□ 0.85
HMGA1-202ENST00000347617 TRMT2AQ8IZ69 625 aaKnown RBP20.37■□□□□ 0.85
HMGA1-202ENST00000347617 SLC12A5Q9H2X9 1139 aa20.37■□□□□ 0.85
HMGA1-202ENST00000347617 ADAMTS13Q76LX8 1427 aa20.37■□□□□ 0.85
HMGA1-202ENST00000347617 NKTRP30414 1462 aaKnown RBP20.37■□□□□ 0.85
HMGA1-202ENST00000347617 PPP2R1AP30153 589 aa20.36■□□□□ 0.85
HMGA1-202ENST00000347617 SLC4A3P48751 1232 aa20.36■□□□□ 0.85
HMGA1-202ENST00000347617 TXNDC2Q86VQ3 553 aa20.36■□□□□ 0.85
HMGA1-202ENST00000347617 PLEKHH1Q9ULM0 1364 aa20.36■□□□□ 0.85
HMGA1-202ENST00000347617 LTKP29376 864 aa20.36■□□□□ 0.85
HMGA1-202ENST00000347617 SLFN5Q08AF3 891 aa20.36■□□□□ 0.85
HMGA1-202ENST00000347617 ADAMTS8Q9UP79 889 aa20.36■□□□□ 0.85
HMGA1-202ENST00000347617 TBX22Q9Y458 520 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms