RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 CTTNBP2Q8WZ74 1663 aa10.43□□□□□ -0.74
ATG4A-201ENST00000343524 ESPNB1AK53 854 aa10.43□□□□□ -0.74
ATG4A-201ENST00000343524 METRNQ9UJH8 293 aa10.43□□□□□ -0.74
ATG4A-201ENST00000343524 C3P01024 1663 aa10.42□□□□□ -0.74
ATG4A-201ENST00000343524 NCKAP5LQ9HCH0 1330 aa10.42□□□□□ -0.74
ATG4A-201ENST00000343524 TRIM44Q96DX7 344 aaPredicted RBP10.42□□□□□ -0.74
ATG4A-201ENST00000343524 XRCC6P12956 609 aaKnown RBP eCLIP10.41□□□□□ -0.74
ATG4A-201ENST00000343524 FGD1P98174 961 aa10.41□□□□□ -0.74
ATG4A-201ENST00000343524 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.41□□□□□ -0.74
ATG4A-201ENST00000343524 SLC39A7Q92504 469 aa10.41□□□□□ -0.74
ATG4A-201ENST00000343524 ZMYM3Q14202 1370 aa10.41□□□□□ -0.74
ATG4A-201ENST00000343524 CRBNQ96SW2 442 aa10.41□□□□□ -0.74
ATG4A-201ENST00000343524 MYH16Q9H6N6 1097 aa10.41□□□□□ -0.74
ATG4A-201ENST00000343524 MBD5Q9P267 1494 aa10.4□□□□□ -0.74
ATG4A-201ENST00000343524 C7P10643 843 aa10.4□□□□□ -0.74
ATG4A-201ENST00000343524 BLMP54132 1417 aaPredicted RBP10.39□□□□□ -0.75
ATG4A-201ENST00000343524 ATN1P54259 1190 aaPredicted RBP10.39□□□□□ -0.75
ATG4A-201ENST00000343524 PKD2Q13563 968 aa10.39□□□□□ -0.75
ATG4A-201ENST00000343524 POTEAQ6S8J7 498 aa10.39□□□□□ -0.75
ATG4A-201ENST00000343524 PRDM4Q9UKN5 801 aa10.39□□□□□ -0.75
ATG4A-201ENST00000343524 TRPC6Q9Y210 931 aa10.39□□□□□ -0.75
ATG4A-201ENST00000343524 USP47Q96K76 1375 aa10.39□□□□□ -0.75
ATG4A-201ENST00000343524 ARID3CA6NKF2 412 aa10.39□□□□□ -0.75
ATG4A-201ENST00000343524 MAP3K13O43283 966 aa10.39□□□□□ -0.75
ATG4A-201ENST00000343524 POTEJP0CG39 1038 aa10.39□□□□□ -0.75
ATG4A-201ENST00000343524 SMAP1Q8IYB5 467 aaPredicted RBP10.39□□□□□ -0.75
ATG4A-201ENST00000343524 ANKRD30BQ9BXX2 1392 aa10.38□□□□□ -0.75
ATG4A-201ENST00000343524 PTMSP20962 102 aa10.38□□□□□ -0.75
ATG4A-201ENST00000343524 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.38□□□□□ -0.75
ATG4A-201ENST00000343524 UPF2Q9HAU5 1272 aaKnown RBP10.38□□□□□ -0.75
ATG4A-201ENST00000343524 MAPK8IP3Q9UPT6 1336 aa10.38□□□□□ -0.75
ATG4A-201ENST00000343524 ALKQ9UM73 1620 aa10.37□□□□□ -0.75
ATG4A-201ENST00000343524 DDX11L8A8MPP1 907 aa10.37□□□□□ -0.75
ATG4A-201ENST00000343524 NLRP13Q86W25 1043 aa10.37□□□□□ -0.75
ATG4A-201ENST00000343524 MPHOSPH9Q99550 1183 aa10.37□□□□□ -0.75
ATG4A-201ENST00000343524 CPS1P31327 1500 aa10.37□□□□□ -0.75
ATG4A-201ENST00000343524 PLA2R1Q13018 1463 aa10.37□□□□□ -0.75
ATG4A-201ENST00000343524 PLCD3Q8N3E9 789 aa10.37□□□□□ -0.75
ATG4A-201ENST00000343524 BMP2KQ9NSY1 1161 aaPredicted RBP10.37□□□□□ -0.75
ATG4A-201ENST00000343524 SCAPERQ9BY12 1400 aa10.36□□□□□ -0.75
ATG4A-201ENST00000343524 RALGAPBQ86X10 1494 aa10.36□□□□□ -0.75
ATG4A-201ENST00000343524 GRPEL1Q9HAV7 217 aa10.35□□□□□ -0.75
ATG4A-201ENST00000343524 A0A0U1RQG5 324 aaPredicted RBP10.35□□□□□ -0.75
ATG4A-201ENST00000343524 NUBP1P53384 320 aa10.35□□□□□ -0.75
ATG4A-201ENST00000343524 PDE4CQ08493 712 aa10.35□□□□□ -0.75
ATG4A-201ENST00000343524 NBPF8Q3BBV2 869 aa10.35□□□□□ -0.75
ATG4A-201ENST00000343524 ROCK1Q13464 1354 aa10.34□□□□□ -0.75
ATG4A-201ENST00000343524 MCM4P33991 863 aa10.34□□□□□ -0.75
ATG4A-201ENST00000343524 ANTXR1Q9H6X2 564 aa10.34□□□□□ -0.75
ATG4A-201ENST00000343524 ATP1B4Q9UN42 357 aaPredicted RBP10.34□□□□□ -0.75
ATG4A-201ENST00000343524 NPATQ14207 1427 aa10.34□□□□□ -0.75
ATG4A-201ENST00000343524 SETD1AO15047 1707 aaKnown RBP10.33□□□□□ -0.76
ATG4A-201ENST00000343524 KIAA1211Q6ZU35 1233 aa10.33□□□□□ -0.76
ATG4A-201ENST00000343524 UPF1Q92900 1129 aaKnown RBP eCLIP10.33□□□□□ -0.76
ATG4A-201ENST00000343524 PARD3Q8TEW0 1356 aa10.33□□□□□ -0.76
ATG4A-201ENST00000343524 NINLQ9Y2I6 1382 aa10.33□□□□□ -0.76
ATG4A-201ENST00000343524 TIE1P35590 1138 aa10.33□□□□□ -0.76
ATG4A-201ENST00000343524 UTP14CQ5TAP6 766 aaKnown RBP10.33□□□□□ -0.76
ATG4A-201ENST00000343524 NLRP1Q9C000 1473 aa10.32□□□□□ -0.76
ATG4A-201ENST00000343524 SAMD9Q5K651 1589 aa10.32□□□□□ -0.76
ATG4A-201ENST00000343524 CCDC173Q0VFZ6 552 aa10.32□□□□□ -0.76
ATG4A-201ENST00000343524 ANP32BQ92688 251 aaKnown RBP10.32□□□□□ -0.76
ATG4A-201ENST00000343524 LRRIQ1Q96JM4 1722 aa10.31□□□□□ -0.76
ATG4A-201ENST00000343524 POTEFA5A3E0 1075 aa10.31□□□□□ -0.76
ATG4A-201ENST00000343524 PANK2Q9BZ23 570 aa10.31□□□□□ -0.76
ATG4A-201ENST00000343524 SLKQ9H2G2 1235 aaPredicted RBP10.31□□□□□ -0.76
ATG4A-201ENST00000343524 CHMP5Q9NZZ3 219 aa10.31□□□□□ -0.76
ATG4A-201ENST00000343524 AGLP35573 1532 aa10.31□□□□□ -0.76
ATG4A-201ENST00000343524 REREQ9P2R6 1566 aa10.31□□□□□ -0.76
ATG4A-201ENST00000343524 TRAK2O60296 914 aa10.31□□□□□ -0.76
ATG4A-201ENST00000343524 OFD1O75665 1012 aa10.31□□□□□ -0.76
ATG4A-201ENST00000343524 TNNT2P45379 298 aaPredicted RBP10.31□□□□□ -0.76
ATG4A-201ENST00000343524 SHANK2Q9UPX8 1470 aa10.31□□□□□ -0.76
ATG4A-201ENST00000343524 MSNP26038 577 aaKnown RBP10.3□□□□□ -0.76
ATG4A-201ENST00000343524 SKOR2Q2VWA4 1001 aaPredicted RBP10.3□□□□□ -0.76
ATG4A-201ENST00000343524 ESF1Q9H501 851 aaKnown RBP10.3□□□□□ -0.76
ATG4A-201ENST00000343524 ZNF142P52746 1687 aaPredicted RBP10.3□□□□□ -0.76
ATG4A-201ENST00000343524 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.29□□□□□ -0.76
ATG4A-201ENST00000343524 USP19O94966 1318 aa10.29□□□□□ -0.76
ATG4A-201ENST00000343524 ZSCAN30Q86W11 494 aa10.29□□□□□ -0.76
ATG4A-201ENST00000343524 PLIN1O60240 522 aa10.29□□□□□ -0.76
ATG4A-201ENST00000343524 RGS3P49796 1198 aa10.29□□□□□ -0.76
ATG4A-201ENST00000343524 ANKRD30AQ9BXX3 1397 aa10.28□□□□□ -0.76
ATG4A-201ENST00000343524 HS1BP3Q53T59 392 aa10.28□□□□□ -0.76
ATG4A-201ENST00000343524 POLR3GLQ9BT43 218 aa10.28□□□□□ -0.76
ATG4A-201ENST00000343524 ERBB4Q15303 1308 aa10.27□□□□□ -0.76
ATG4A-201ENST00000343524 TTLL13PA6NNM8 815 aa10.27□□□□□ -0.76
ATG4A-201ENST00000343524 ARXQ96QS3 562 aa10.27□□□□□ -0.76
ATG4A-201ENST00000343524 SGIP1Q9BQI5 828 aa10.27□□□□□ -0.76
ATG4A-201ENST00000343524 RRP7BPQ9NSQ0 103 aa10.27□□□□□ -0.76
ATG4A-201ENST00000343524 DNMT1P26358 1616 aaKnown RBP10.27□□□□□ -0.77
ATG4A-201ENST00000343524 DYNC1I1O14576 645 aa10.27□□□□□ -0.77
ATG4A-201ENST00000343524 CSPP1Q1MSJ5 1256 aa10.27□□□□□ -0.77
ATG4A-201ENST00000343524 SKAP1Q86WV1 359 aa10.26□□□□□ -0.77
ATG4A-201ENST00000343524 TBC1D32Q96NH3 1257 aa10.26□□□□□ -0.77
ATG4A-201ENST00000343524 RAPGEF6Q8TEU7 1601 aa10.26□□□□□ -0.77
ATG4A-201ENST00000343524 DIP2CQ9Y2E4 1556 aa10.26□□□□□ -0.77
ATG4A-201ENST00000343524 IBTKQ9P2D0 1353 aaPredicted RBP10.26□□□□□ -0.77
ATG4A-201ENST00000343524 CGNL1Q0VF96 1302 aa10.25□□□□□ -0.77
ATG4A-201ENST00000343524 MROH2AA6NES4 1674 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms