RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 C6orf229H3BNL8 230 aa10.57□□□□□ -0.72
HMGB1-203ENST00000341423 ADGRL1O94910 1474 aa10.57□□□□□ -0.72
HMGB1-203ENST00000341423 ROCK2O75116 1388 aaKnown RBP10.56□□□□□ -0.72
HMGB1-203ENST00000341423 RTCBQ9Y3I0 505 aaKnown RBP10.56□□□□□ -0.72
HMGB1-203ENST00000341423 TMEM106CQ9BVX2 250 aa10.56□□□□□ -0.72
HMGB1-203ENST00000341423 CDK19Q9BWU1 502 aa10.56□□□□□ -0.72
HMGB1-203ENST00000341423 TMEM132AQ24JP5 1023 aa10.56□□□□□ -0.72
HMGB1-203ENST00000341423 SMARCA4P51532 1647 aa10.56□□□□□ -0.72
HMGB1-203ENST00000341423 CCDC27Q2M243 656 aa10.56□□□□□ -0.72
HMGB1-203ENST00000341423 ATF5Q9Y2D1 282 aaPredicted RBP10.56□□□□□ -0.72
HMGB1-203ENST00000341423 IBSPP21815 317 aaPredicted RBP10.55□□□□□ -0.72
HMGB1-203ENST00000341423 PSDA5PKW4 1024 aaPredicted RBP10.55□□□□□ -0.72
HMGB1-203ENST00000341423 RIC3Q7Z5B4 369 aa10.55□□□□□ -0.72
HMGB1-203ENST00000341423 CCDC125Q86Z20 511 aa10.55□□□□□ -0.72
HMGB1-203ENST00000341423 ACSBG1Q96GR2 724 aa10.55□□□□□ -0.72
HMGB1-203ENST00000341423 PTPRKQ15262 1439 aa10.55□□□□□ -0.72
HMGB1-203ENST00000341423 ASXL2Q76L83 1435 aa10.55□□□□□ -0.72
HMGB1-203ENST00000341423 EP400NLQ6ZTU2 488 aa10.55□□□□□ -0.72
HMGB1-203ENST00000341423 C9orf78Q9NZ63 289 aaPredicted RBP10.55□□□□□ -0.72
HMGB1-203ENST00000341423 PPM1FP49593 454 aaPredicted RBP10.54□□□□□ -0.72
HMGB1-203ENST00000341423 YEATS2Q9ULM3 1422 aa10.54□□□□□ -0.72
HMGB1-203ENST00000341423 TOPBP1Q92547 1522 aa10.54□□□□□ -0.72
HMGB1-203ENST00000341423 NBR1Q14596 966 aa10.54□□□□□ -0.72
HMGB1-203ENST00000341423 MPHOSPH8Q99549 860 aa10.54□□□□□ -0.72
HMGB1-203ENST00000341423 ST20-MTHFSA0A0A6YYL1 179 aa10.54□□□□□ -0.72
HMGB1-203ENST00000341423 MTHFSP49914 203 aa10.54□□□□□ -0.72
HMGB1-203ENST00000341423 TOP2AP11388 1531 aaKnown RBP10.54□□□□□ -0.72
HMGB1-203ENST00000341423 CHMP4BP1P59074 171 aa10.54□□□□□ -0.72
HMGB1-203ENST00000341423 CGNL1Q0VF96 1302 aa10.54□□□□□ -0.72
HMGB1-203ENST00000341423 KCNA6P17658 529 aa10.54□□□□□ -0.72
HMGB1-203ENST00000341423 PDE6BP35913 854 aa10.54□□□□□ -0.72
HMGB1-203ENST00000341423 NOP2P46087 812 aaKnown RBP10.54□□□□□ -0.72
HMGB1-203ENST00000341423 ZNF530Q6P9A1 599 aaPredicted RBP10.53□□□□□ -0.72
HMGB1-203ENST00000341423 KIF15Q9NS87 1388 aa10.53□□□□□ -0.72
HMGB1-203ENST00000341423 CA8P35219 290 aa10.53□□□□□ -0.72
HMGB1-203ENST00000341423 HSPA1LP34931 641 aa10.53□□□□□ -0.72
HMGB1-203ENST00000341423 SLC4A10Q6U841 1118 aa10.53□□□□□ -0.72
HMGB1-203ENST00000341423 PRAM1Q96QH2 718 aa10.53□□□□□ -0.72
HMGB1-203ENST00000341423 BTG4Q9NY30 223 aa10.53□□□□□ -0.72
HMGB1-203ENST00000341423 FYCO1Q9BQS8 1478 aa10.52□□□□□ -0.72
HMGB1-203ENST00000341423 WDR7Q9Y4E6 1490 aa10.52□□□□□ -0.72
HMGB1-203ENST00000341423 FBXO31Q5XUX0 539 aaPredicted RBP10.52□□□□□ -0.72
HMGB1-203ENST00000341423 SPRYD3Q8NCJ5 442 aa10.52□□□□□ -0.72
HMGB1-203ENST00000341423 MRS2Q9HD23 443 aa10.52□□□□□ -0.72
HMGB1-203ENST00000341423 ANKIB1Q9P2G1 1089 aa10.52□□□□□ -0.72
HMGB1-203ENST00000341423 PLIN1O60240 522 aa10.52□□□□□ -0.73
HMGB1-203ENST00000341423 KDM2BQ8NHM5 1336 aa10.52□□□□□ -0.73
HMGB1-203ENST00000341423 PRDM2Q13029 1718 aa10.52□□□□□ -0.73
HMGB1-203ENST00000341423 CCNL1Q9UK58 526 aaPredicted RBP10.51□□□□□ -0.73
HMGB1-203ENST00000341423 CENPJQ9HC77 1338 aaPredicted RBP10.51□□□□□ -0.73
HMGB1-203ENST00000341423 ATAD2Q6PL18 1390 aa10.51□□□□□ -0.73
HMGB1-203ENST00000341423 EPRSP07814 1512 aaKnown RBP10.51□□□□□ -0.73
HMGB1-203ENST00000341423 IPO8O15397 1037 aaKnown RBP10.51□□□□□ -0.73
HMGB1-203ENST00000341423 CHRNA2Q15822 529 aa10.51□□□□□ -0.73
HMGB1-203ENST00000341423 MPHOSPH6Q99547 160 aaKnown RBP10.51□□□□□ -0.73
HMGB1-203ENST00000341423 HMGXB3Q12766 1538 aa10.51□□□□□ -0.73
HMGB1-203ENST00000341423 RBM26Q5T8P6 1007 aaKnown RBP10.51□□□□□ -0.73
HMGB1-203ENST00000341423 RASSF8Q8NHQ8 419 aa10.51□□□□□ -0.73
HMGB1-203ENST00000341423 CFTRP13569 1480 aa10.5□□□□□ -0.73
HMGB1-203ENST00000341423 H0YIN7 160 aa10.5□□□□□ -0.73
HMGB1-203ENST00000341423 PTCD1O75127 700 aaKnown RBP10.5□□□□□ -0.73
HMGB1-203ENST00000341423 TRAPPC3LQ5T215 181 aa10.5□□□□□ -0.73
HMGB1-203ENST00000341423 KIAA0586Q9BVV6 1533 aa10.5□□□□□ -0.73
HMGB1-203ENST00000341423 AIMP1Q12904 312 aaKnown RBP10.5□□□□□ -0.73
HMGB1-203ENST00000341423 TMEM132EQ6IEE7 984 aa10.5□□□□□ -0.73
HMGB1-203ENST00000341423 H7C1D1 291 aa10.5□□□□□ -0.73
HMGB1-203ENST00000341423 AFF2P51816 1311 aa10.49□□□□□ -0.73
HMGB1-203ENST00000341423 ATP2B2Q01814 1243 aa10.49□□□□□ -0.73
HMGB1-203ENST00000341423 NBPF6Q5VWK0 638 aa10.49□□□□□ -0.73
HMGB1-203ENST00000341423 NBPF5PQ86XG9 351 aaPredicted RBP10.49□□□□□ -0.73
HMGB1-203ENST00000341423 NBPF4Q96M43 638 aa10.49□□□□□ -0.73
HMGB1-203ENST00000341423 KIAA1211Q6ZU35 1233 aa10.49□□□□□ -0.73
HMGB1-203ENST00000341423 DDX46Q7L014 1031 aaKnown RBP10.49□□□□□ -0.73
HMGB1-203ENST00000341423 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.49□□□□□ -0.738e-9■■■□□ 17.4
HMGB1-203ENST00000341423 RPGRIP1LQ68CZ1 1315 aa10.49□□□□□ -0.73
HMGB1-203ENST00000341423 LPXNO60711 386 aa10.49□□□□□ -0.73
HMGB1-203ENST00000341423 IGHMBP2P38935 993 aaKnown RBP10.49□□□□□ -0.73
HMGB1-203ENST00000341423 GAS2L2Q8NHY3 880 aa10.49□□□□□ -0.73
HMGB1-203ENST00000341423 TEX13AQ9BXU3 409 aaPredicted RBP10.49□□□□□ -0.73
HMGB1-203ENST00000341423 SSFA2P28290 1259 aa10.49□□□□□ -0.73
HMGB1-203ENST00000341423 ANKRD30BQ9BXX2 1392 aa10.49□□□□□ -0.73
HMGB1-203ENST00000341423 AKAP17AQ02040 695 aaKnown RBP10.48□□□□□ -0.73
HMGB1-203ENST00000341423 RTEL1-TNFRSF6BF6WH68 1400 aa10.48□□□□□ -0.73
HMGB1-203ENST00000341423 SKIV2LQ15477 1246 aaKnown RBP10.48□□□□□ -0.73
HMGB1-203ENST00000341423 SOGA3Q5TF21 947 aa10.48□□□□□ -0.73
HMGB1-203ENST00000341423 SOCS7O14512 581 aa10.48□□□□□ -0.73
HMGB1-203ENST00000341423 SLC4A8Q2Y0W8 1093 aa10.48□□□□□ -0.73
HMGB1-203ENST00000341423 SETDB2Q96T68 719 aa10.48□□□□□ -0.73
HMGB1-203ENST00000341423 CNNM1Q9NRU3 951 aa10.48□□□□□ -0.73
HMGB1-203ENST00000341423 USP47Q96K76 1375 aa10.47□□□□□ -0.73
HMGB1-203ENST00000341423 R3HDM1Q15032 1099 aaKnown RBP10.47□□□□□ -0.73
HMGB1-203ENST00000341423 ATF7IPQ6VMQ6 1270 aa10.47□□□□□ -0.73
HMGB1-203ENST00000341423 EYA3Q99504 573 aa10.47□□□□□ -0.73
HMGB1-203ENST00000341423 FEZ1Q99689 392 aa10.47□□□□□ -0.73
HMGB1-203ENST00000341423 UHRF1BP1LA0JNW5 1464 aa10.47□□□□□ -0.73
HMGB1-203ENST00000341423 TRIM37O94972 964 aa10.47□□□□□ -0.73
HMGB1-203ENST00000341423 CRACR2BQ8N4Y2 399 aaPredicted RBP10.47□□□□□ -0.73
HMGB1-203ENST00000341423 FYB1O15117 783 aa10.46□□□□□ -0.73
HMGB1-203ENST00000341423 HMMRO75330 724 aa10.46□□□□□ -0.73
HMGB1-203ENST00000341423 CCDC61Q9Y6R9 512 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms