RNA–Protein interactions for RNA: ENST00000308354.11

PDLIM2-202, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,236 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-202ENST00000308354 NRXN3Q9Y4C0 1643 aa30.24■■■□□ 2.43
PDLIM2-202ENST00000308354 METP08581 1390 aa30.23■■■□□ 2.43
PDLIM2-202ENST00000308354 SETD1AO15047 1707 aaKnown RBP30.22■■■□□ 2.43
PDLIM2-202ENST00000308354 NLRP1Q9C000 1473 aa30.21■■■□□ 2.43
PDLIM2-202ENST00000308354 NPC1L1Q9UHC9 1359 aa30.2■■■□□ 2.43
PDLIM2-202ENST00000308354 LTKP29376 864 aa30.2■■■□□ 2.42
PDLIM2-202ENST00000308354 NSD3Q9BZ95 1437 aa30.2■■■□□ 2.42
PDLIM2-202ENST00000308354 PLEKHH1Q9ULM0 1364 aa30.19■■■□□ 2.42
PDLIM2-202ENST00000308354 PUS7Q96PZ0 661 aaKnown RBP30.18■■■□□ 2.42
PDLIM2-202ENST00000308354 TXNDC2Q86VQ3 553 aa30.15■■■□□ 2.42
PDLIM2-202ENST00000308354 ABCC11Q96J66 1382 aa30.14■■■□□ 2.42
PDLIM2-202ENST00000308354 CDK19Q9BWU1 502 aa30.14■■■□□ 2.41
PDLIM2-202ENST00000308354 DLC1Q96QB1 1528 aa30.1■■■□□ 2.41
PDLIM2-202ENST00000308354 SALL2Q9Y467 1007 aaPredicted RBP30.1■■■□□ 2.41
PDLIM2-202ENST00000308354 ANKRD36BQ8N2N9 1353 aa30.1■■■□□ 2.41
PDLIM2-202ENST00000308354 TNNT2P45379 298 aaPredicted RBP30.08■■■□□ 2.41
PDLIM2-202ENST00000308354 SLC26A8Q96RN1 970 aa30.08■■■□□ 2.41
PDLIM2-202ENST00000308354 EID1Q9Y6B2 187 aa30.08■■■□□ 2.41
PDLIM2-202ENST00000308354 ADAMTS13Q76LX8 1427 aa30.08■■■□□ 2.41
PDLIM2-202ENST00000308354 ADAMTS8Q9UP79 889 aa30.06■■■□□ 2.4
PDLIM2-202ENST00000308354 ATAD2Q6PL18 1390 aa30.06■■■□□ 2.4
PDLIM2-202ENST00000308354 MORC1Q86VD1 984 aa30.06■■■□□ 2.4
PDLIM2-202ENST00000308354 A0A1W2PP64 1363 aa30.05■■■□□ 2.4
PDLIM2-202ENST00000308354 PLEKHG1Q9ULL1 1385 aa30.05■■■□□ 2.4
PDLIM2-202ENST00000308354 IRX6P78412 446 aaPredicted RBP30.05■■■□□ 2.4
PDLIM2-202ENST00000308354 CGNL1Q0VF96 1302 aa30.04■■■□□ 2.4
PDLIM2-202ENST00000308354 RIMS1Q86UR5 1692 aaKnown RBP30.04■■■□□ 2.4
PDLIM2-202ENST00000308354 THEMISQ8N1K5 641 aaPredicted RBP30.03■■■□□ 2.4
PDLIM2-202ENST00000308354 CABP1Q9NZU7 370 aa30.02■■■□□ 2.4
PDLIM2-202ENST00000308354 WDR43Q15061 677 aaKnown RBP eCLIP30.01■■■□□ 2.39
PDLIM2-202ENST00000308354 NINLQ9Y2I6 1382 aa30■■■□□ 2.39
PDLIM2-202ENST00000308354 SMG6Q86US8 1419 aaKnown RBP29.99■■■□□ 2.39
PDLIM2-202ENST00000308354 ARHGAP23Q9P227 1491 aa29.99■■■□□ 2.39
PDLIM2-202ENST00000308354 SLIT1O75093 1534 aa29.99■■■□□ 2.39
PDLIM2-202ENST00000308354 TERF2IPQ9NYB0 399 aa29.98■■■□□ 2.39
PDLIM2-202ENST00000308354 ROBO2Q9HCK4 1378 aa29.97■■■□□ 2.39
PDLIM2-202ENST00000308354 TECPR2O15040 1411 aa29.97■■■□□ 2.39
PDLIM2-202ENST00000308354 BLMP54132 1417 aaPredicted RBP29.97■■■□□ 2.39
PDLIM2-202ENST00000308354 CD163L1Q9NR16 1453 aa29.97■■■□□ 2.39
PDLIM2-202ENST00000308354 WASLO00401 505 aaPredicted RBP29.96■■■□□ 2.39
PDLIM2-202ENST00000308354 USP32Q8NFA0 1604 aa29.95■■■□□ 2.39
PDLIM2-202ENST00000308354 FAM135BQ49AJ0 1406 aa29.95■■■□□ 2.38
PDLIM2-202ENST00000308354 SIRT1Q96EB6 747 aa29.94■■■□□ 2.38
PDLIM2-202ENST00000308354 KNDC1Q76NI1 1749 aa29.93■■■□□ 2.38
PDLIM2-202ENST00000308354 GGNBP2Q9H3C7 697 aa29.93■■■□□ 2.38
PDLIM2-202ENST00000308354 NUDCQ9Y266 331 aa29.93■■■□□ 2.38
PDLIM2-202ENST00000308354 CPS1P31327 1500 aa29.93■■■□□ 2.38
PDLIM2-202ENST00000308354 MED14O60244 1454 aa29.93■■■□□ 2.38
PDLIM2-202ENST00000308354 HDGFL2Q7Z4V5 671 aaPredicted RBP29.92■■■□□ 2.38
PDLIM2-202ENST00000308354 PTPRUQ92729 1446 aa29.92■■■□□ 2.38
PDLIM2-202ENST00000308354 NCKAP5LQ9HCH0 1330 aa29.91■■■□□ 2.38
PDLIM2-202ENST00000308354 CEP170BQ9Y4F5 1589 aaPredicted RBP29.9■■■□□ 2.38
PDLIM2-202ENST00000308354 INSRP06213 1382 aa29.9■■■□□ 2.38
PDLIM2-202ENST00000308354 ADAMTSL3P82987 1691 aa29.89■■■□□ 2.38
PDLIM2-202ENST00000308354 CCDC146Q8IYE0 955 aa29.88■■■□□ 2.37
PDLIM2-202ENST00000308354 AMOTL2Q9Y2J4 779 aa29.88■■■□□ 2.37
PDLIM2-202ENST00000308354 NSD2O96028 1365 aa29.87■■■□□ 2.37
PDLIM2-202ENST00000308354 FYB1O15117 783 aa29.87■■■□□ 2.37
PDLIM2-202ENST00000308354 MTHFSP49914 203 aa29.87■■■□□ 2.37
PDLIM2-202ENST00000308354 TBX22Q9Y458 520 aa29.87■■■□□ 2.37
PDLIM2-202ENST00000308354 NUDT16Q96DE0 195 aaKnown RBP29.87■■■□□ 2.37
PDLIM2-202ENST00000308354 POLR3AO14802 1390 aaPredicted RBP29.85■■■□□ 2.37
PDLIM2-202ENST00000308354 PPIP5K1Q6PFW1 1433 aa29.85■■■□□ 2.37
PDLIM2-202ENST00000308354 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.84■■■□□ 2.37
PDLIM2-202ENST00000308354 CDCA7LQ96GN5 454 aa29.84■■■□□ 2.37
PDLIM2-202ENST00000308354 NUTM2FA1L443 756 aa29.83■■■□□ 2.37
PDLIM2-202ENST00000308354 ERICH6BQ5W0A0 696 aa29.81■■■□□ 2.36
PDLIM2-202ENST00000308354 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.81■■■□□ 2.36
PDLIM2-202ENST00000308354 PRR36Q9H6K5 1346 aa29.8■■■□□ 2.36
PDLIM2-202ENST00000308354 TSHZ2Q9NRE2 1034 aa29.8■■■□□ 2.36
PDLIM2-202ENST00000308354 CCDC61Q9Y6R9 512 aa29.8■■■□□ 2.36
PDLIM2-202ENST00000308354 ATP7BP35670 1465 aa29.79■■■□□ 2.36
PDLIM2-202ENST00000308354 PDE3BQ13370 1112 aa29.76■■■□□ 2.35
PDLIM2-202ENST00000308354 ANKLE2Q86XL3 938 aa29.75■■■□□ 2.35
PDLIM2-202ENST00000308354 APAF1O14727 1248 aa29.75■■■□□ 2.35
PDLIM2-202ENST00000308354 CPSF1Q10570 1443 aaKnown RBP29.74■■■□□ 2.35
PDLIM2-202ENST00000308354 CFAP53Q96M91 514 aa29.73■■■□□ 2.35
PDLIM2-202ENST00000308354 PPP4R2Q9NY27 417 aa29.72■■■□□ 2.35
PDLIM2-202ENST00000308354 SHPRHQ149N8 1683 aa29.72■■■□□ 2.35
PDLIM2-202ENST00000308354 RNF123Q5XPI4 1314 aa29.72■■■□□ 2.35
PDLIM2-202ENST00000308354 KCNA6P17658 529 aa29.72■■■□□ 2.35
PDLIM2-202ENST00000308354 FBLN1P23142 703 aa29.72■■■□□ 2.35
PDLIM2-202ENST00000308354 DIP2AQ14689 1571 aa29.71■■■□□ 2.35
PDLIM2-202ENST00000308354 NME9Q86XW9 330 aa29.69■■■□□ 2.34
PDLIM2-202ENST00000308354 PTCH1Q13635 1447 aa29.69■■■□□ 2.34
PDLIM2-202ENST00000308354 ADGRB2O60241 1585 aa29.69■■■□□ 2.34
PDLIM2-202ENST00000308354 ZNF142P52746 1687 aaPredicted RBP29.69■■■□□ 2.34
PDLIM2-202ENST00000308354 ZRANB1Q9UGI0 708 aa29.68■■■□□ 2.34
PDLIM2-202ENST00000308354 SETD1BQ9UPS6 1966 aaKnown RBP29.68■■■□□ 2.34
PDLIM2-202ENST00000308354 ANKRD26Q9UPS8 1709 aa29.68■■■□□ 2.34
PDLIM2-202ENST00000308354 KIF20BQ96Q89 1820 aa29.68■■■□□ 2.34
PDLIM2-202ENST00000308354 CDC42BPGQ6DT37 1551 aa29.67■■■□□ 2.34
PDLIM2-202ENST00000308354 EDC4Q6P2E9 1401 aaKnown RBP29.67■■■□□ 2.34
PDLIM2-202ENST00000308354 ZNF521Q96K83 1311 aa29.64■■■□□ 2.34
PDLIM2-202ENST00000308354 XRN1Q8IZH2 1706 aaKnown RBP29.63■■■□□ 2.33
PDLIM2-202ENST00000308354 ACEP12821 1306 aa29.63■■■□□ 2.33
PDLIM2-202ENST00000308354 U2AF1L5P0DN76 240 aaPredicted RBP29.63■■■□□ 2.33
PDLIM2-202ENST00000308354 U2AF1Q01081 240 aaKnown RBP eCLIP29.63■■■□□ 2.33
PDLIM2-202ENST00000308354 PPM1GO15355 546 aaPredicted RBP29.61■■■□□ 2.33
PDLIM2-202ENST00000308354 RBM33Q96EV2 1170 aaKnown RBP29.61■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms