RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 MINK1Q8N4C8 1332 aaPredicted RBP19.29■□□□□ 0.68
SS18-201ENST00000269137 PLEKHH1Q9ULM0 1364 aa19.29■□□□□ 0.68
SS18-201ENST00000269137 PIK3R4Q99570 1358 aa19.28■□□□□ 0.68
SS18-201ENST00000269137 PTPRUQ92729 1446 aa19.27■□□□□ 0.68
SS18-201ENST00000269137 KNSTRNQ9Y448 316 aa19.26■□□□□ 0.67
SS18-201ENST00000269137 ROBO2Q9HCK4 1378 aa19.26■□□□□ 0.67
SS18-201ENST00000269137 NINLQ9Y2I6 1382 aa19.26■□□□□ 0.67
SS18-201ENST00000269137 CABP2Q9NPB3 220 aa19.25■□□□□ 0.67
SS18-201ENST00000269137 ATAD2Q6PL18 1390 aa19.25■□□□□ 0.67
SS18-201ENST00000269137 PARD3Q8TEW0 1356 aa19.25■□□□□ 0.67
SS18-201ENST00000269137 NPC1L1Q9UHC9 1359 aa19.25■□□□□ 0.67
SS18-201ENST00000269137 KDM4FA0A1W2PPD8 638 aa19.24■□□□□ 0.67
SS18-201ENST00000269137 SRPK2P78362 688 aaKnown RBP19.24■□□□□ 0.67
SS18-201ENST00000269137 PTCH1Q13635 1447 aa19.23■□□□□ 0.67
SS18-201ENST00000269137 AMER1Q5JTC6 1135 aaPredicted RBP19.23■□□□□ 0.67
SS18-201ENST00000269137 YTHDC1Q96MU7 727 aaKnown RBP19.23■□□□□ 0.67
SS18-201ENST00000269137 CDK19Q9BWU1 502 aa19.23■□□□□ 0.67
SS18-201ENST00000269137 SLC12A5Q9H2X9 1139 aa19.23■□□□□ 0.67
SS18-201ENST00000269137 AMOTL2Q9Y2J4 779 aa19.23■□□□□ 0.67
SS18-201ENST00000269137 TMC1Q8TDI8 760 aa19.23■□□□□ 0.67
SS18-201ENST00000269137 XRN1Q8IZH2 1706 aaKnown RBP19.21■□□□□ 0.67
SS18-201ENST00000269137 MYBBP1AQ9BQG0 1328 aaKnown RBP19.21■□□□□ 0.67
SS18-201ENST00000269137 CARD14Q9BXL6 1004 aa19.21■□□□□ 0.67
SS18-201ENST00000269137 NPHP4O75161 1426 aaPredicted RBP19.21■□□□□ 0.67
SS18-201ENST00000269137 WASLO00401 505 aaPredicted RBP19.21■□□□□ 0.67
SS18-201ENST00000269137 ANKRD36BQ8N2N9 1353 aa19.19■□□□□ 0.66
SS18-201ENST00000269137 CNGB1Q14028 1251 aaPredicted RBP19.19■□□□□ 0.66
SS18-201ENST00000269137 CCDC184Q52MB2 194 aa19.19■□□□□ 0.66
SS18-201ENST00000269137 ADGRB2O60241 1585 aa19.19■□□□□ 0.66
SS18-201ENST00000269137 CC2D1BQ5T0F9 858 aaKnown RBP19.18■□□□□ 0.66
SS18-201ENST00000269137 MRS2Q9HD23 443 aa19.18■□□□□ 0.66
SS18-201ENST00000269137 CENPBP07199 599 aaPredicted RBP19.17■□□□□ 0.66
SS18-201ENST00000269137 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.17■□□□□ 0.66
SS18-201ENST00000269137 CHD2O14647 1828 aaKnown RBP19.17■□□□□ 0.66
SS18-201ENST00000269137 BRD4O60885 1362 aaPredicted RBP19.16■□□□□ 0.66
SS18-201ENST00000269137 NLRP13Q86W25 1043 aa19.16■□□□□ 0.66
SS18-201ENST00000269137 NCKAP5LQ9HCH0 1330 aa19.15■□□□□ 0.66
SS18-201ENST00000269137 NSD3Q9BZ95 1437 aa19.15■□□□□ 0.66
SS18-201ENST00000269137 USP32Q8NFA0 1604 aa19.15■□□□□ 0.66
SS18-201ENST00000269137 KCNA6P17658 529 aa19.14■□□□□ 0.65
SS18-201ENST00000269137 TERF2IPQ9NYB0 399 aa19.14■□□□□ 0.65
SS18-201ENST00000269137 CD163L1Q9NR16 1453 aa19.13■□□□□ 0.65
SS18-201ENST00000269137 A0A1W2PP64 1363 aa19.12■□□□□ 0.65
SS18-201ENST00000269137 ATP7BP35670 1465 aa19.12■□□□□ 0.65
SS18-201ENST00000269137 NUDT16Q96DE0 195 aaKnown RBP19.11■□□□□ 0.65
SS18-201ENST00000269137 CABP1Q9NZU7 370 aa19.11■□□□□ 0.65
SS18-201ENST00000269137 CCDC61Q9Y6R9 512 aa19.11■□□□□ 0.65
SS18-201ENST00000269137 CGNL1Q0VF96 1302 aa19.11■□□□□ 0.65
SS18-201ENST00000269137 HDGFL2Q7Z4V5 671 aaPredicted RBP19.09■□□□□ 0.65
SS18-201ENST00000269137 NSD2O96028 1365 aa19.09■□□□□ 0.65
SS18-201ENST00000269137 PNISRQ8TF01 805 aaKnown RBP19.08■□□□□ 0.64
SS18-201ENST00000269137 PPIP5K1Q6PFW1 1433 aa19.08■□□□□ 0.64
SS18-201ENST00000269137 LMTK3Q96Q04 1460 aa19.08■□□□□ 0.64
SS18-201ENST00000269137 PPP2R1AP30153 589 aa19.07■□□□□ 0.64
SS18-201ENST00000269137 PRR36Q9H6K5 1346 aa19.07■□□□□ 0.64
SS18-201ENST00000269137 CPSF1Q10570 1443 aaKnown RBP19.07■□□□□ 0.64
SS18-201ENST00000269137 NWD1Q149M9 1564 aa19.07■□□□□ 0.64
SS18-201ENST00000269137 FAM9BQ8IZU0 186 aa19.05■□□□□ 0.64
SS18-201ENST00000269137 CDC42BPGQ6DT37 1551 aa19.04■□□□□ 0.64
SS18-201ENST00000269137 TOPAZ1Q8N9V7 1692 aa19.04■□□□□ 0.64
SS18-201ENST00000269137 HSPA2P54652 639 aa19.04■□□□□ 0.64
SS18-201ENST00000269137 PLEKHG3A1L390 1219 aa19.03■□□□□ 0.64
SS18-201ENST00000269137 MORC1Q86VD1 984 aa19.02■□□□□ 0.64
SS18-201ENST00000269137 ZNF692Q9BU19 519 aaPredicted RBP19.02■□□□□ 0.63
SS18-201ENST00000269137 ANKARQ7Z5J8 1434 aa19.02■□□□□ 0.63
SS18-201ENST00000269137 EDC4Q6P2E9 1401 aaKnown RBP19■□□□□ 0.63
SS18-201ENST00000269137 AKAP12Q02952 1782 aa19■□□□□ 0.63
SS18-201ENST00000269137 NKTRP30414 1462 aaKnown RBP19■□□□□ 0.63
SS18-201ENST00000269137 ADGRL3Q9HAR2 1447 aa19■□□□□ 0.63
SS18-201ENST00000269137 FYB1O15117 783 aa19■□□□□ 0.63
SS18-201ENST00000269137 MON2Q7Z3U7 1717 aa18.99■□□□□ 0.63
SS18-201ENST00000269137 NALCNQ8IZF0 1738 aa18.99■□□□□ 0.63
SS18-201ENST00000269137 ITSN1Q15811 1721 aa18.99■□□□□ 0.63
SS18-201ENST00000269137 FMN2Q9NZ56 1722 aa18.99■□□□□ 0.63
SS18-201ENST00000269137 SCAF1Q9H7N4 1312 aaKnown RBP18.98■□□□□ 0.63
SS18-201ENST00000269137 ANKRD26Q9UPS8 1709 aa18.98■□□□□ 0.63
SS18-201ENST00000269137 HNRNPUQ00839 825 aaKnown RBP eCLIP18.97■□□□□ 0.63
SS18-201ENST00000269137 INSRP06213 1382 aa18.97■□□□□ 0.63
SS18-201ENST00000269137 STRCQ7RTU9 1775 aa18.97■□□□□ 0.63
SS18-201ENST00000269137 KIF20BQ96Q89 1820 aa18.96■□□□□ 0.63
SS18-201ENST00000269137 NUTM2FA1L443 756 aa18.95■□□□□ 0.62
SS18-201ENST00000269137 ACEP12821 1306 aa18.95■□□□□ 0.62
SS18-201ENST00000269137 GGNBP2Q9H3C7 697 aa18.95■□□□□ 0.62
SS18-201ENST00000269137 POLR3AO14802 1390 aaPredicted RBP18.94■□□□□ 0.62
SS18-201ENST00000269137 PROSER2Q86WR7 435 aaPredicted RBP18.94■□□□□ 0.62
SS18-201ENST00000269137 RGPD8O14715 1765 aaPredicted RBP18.94■□□□□ 0.62
SS18-201ENST00000269137 NCOA3Q9Y6Q9 1424 aa18.93■□□□□ 0.62
SS18-201ENST00000269137 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.93■□□□□ 0.62
SS18-201ENST00000269137 USP6P35125 1406 aa18.92■□□□□ 0.62
SS18-201ENST00000269137 RBM33Q96EV2 1170 aaKnown RBP18.91■□□□□ 0.62
SS18-201ENST00000269137 STRCP1A6NGW2 1772 aa18.91■□□□□ 0.62
SS18-201ENST00000269137 NRKQ7Z2Y5 1582 aa18.91■□□□□ 0.62
SS18-201ENST00000269137 TNNT2P45379 298 aaPredicted RBP18.9■□□□□ 0.62
SS18-201ENST00000269137 SSH2Q76I76 1423 aa18.9■□□□□ 0.62
SS18-201ENST00000269137 C14orf37Q86TY3 774 aa18.9■□□□□ 0.62
SS18-201ENST00000269137 ZBED9Q6R2W3 1325 aa18.9■□□□□ 0.62
SS18-201ENST00000269137 TTC21BQ7Z4L5 1316 aa18.9■□□□□ 0.62
SS18-201ENST00000269137 MTHFSP49914 203 aa18.88■□□□□ 0.61
SS18-201ENST00000269137 NME9Q86XW9 330 aa18.88■□□□□ 0.61
SS18-201ENST00000269137 NGDNQ8NEJ9 315 aaKnown RBP18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 110.2 ms