RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 CDK19Q9BWU1 502 aa22.32■■□□□ 1.16
USP4-201ENST00000265560 NLRP13Q86W25 1043 aa22.32■■□□□ 1.16
USP4-201ENST00000265560 NRXN3Q9Y4C0 1643 aa22.32■■□□□ 1.16
USP4-201ENST00000265560 NUTM2FA1L443 756 aa22.31■■□□□ 1.16
USP4-201ENST00000265560 THEMISQ8N1K5 641 aaPredicted RBP22.3■■□□□ 1.16
USP4-201ENST00000265560 NLRP1Q9C000 1473 aa22.3■■□□□ 1.16
USP4-201ENST00000265560 NCKAP5LQ9HCH0 1330 aa22.29■■□□□ 1.16
USP4-201ENST00000265560 PPP2R1AP30153 589 aa22.28■■□□□ 1.16
USP4-201ENST00000265560 LRPPRCP42704 1394 aaKnown RBP22.28■■□□□ 1.16
USP4-201ENST00000265560 NSD3Q9BZ95 1437 aa22.27■■□□□ 1.16
USP4-201ENST00000265560 SETD1AO15047 1707 aaKnown RBP22.26■■□□□ 1.15
USP4-201ENST00000265560 BRD4O60885 1362 aaPredicted RBP22.26■■□□□ 1.15
USP4-201ENST00000265560 CABP1Q9NZU7 370 aa22.26■■□□□ 1.15
USP4-201ENST00000265560 ADAMTS13Q76LX8 1427 aa22.25■■□□□ 1.15
USP4-201ENST00000265560 ABCC11Q96J66 1382 aa22.23■■□□□ 1.15
USP4-201ENST00000265560 RBM33Q96EV2 1170 aaKnown RBP22.22■■□□□ 1.15
USP4-201ENST00000265560 ROBO2Q9HCK4 1378 aa22.22■■□□□ 1.15
USP4-201ENST00000265560 PLEKHG1Q9ULL1 1385 aa22.2■■□□□ 1.15
USP4-201ENST00000265560 AMOTL2Q9Y2J4 779 aa22.2■■□□□ 1.14
USP4-201ENST00000265560 MORC1Q86VD1 984 aa22.2■■□□□ 1.14
USP4-201ENST00000265560 A0A1W2PP64 1363 aa22.19■■□□□ 1.14
USP4-201ENST00000265560 GGNBP2Q9H3C7 697 aa22.19■■□□□ 1.14
USP4-201ENST00000265560 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.17■■□□□ 1.14
USP4-201ENST00000265560 PTPRUQ92729 1446 aa22.17■■□□□ 1.14
USP4-201ENST00000265560 WASLO00401 505 aaPredicted RBP22.17■■□□□ 1.14
USP4-201ENST00000265560 ADAMTSL3P82987 1691 aa22.17■■□□□ 1.14
USP4-201ENST00000265560 ADAMTS8Q9UP79 889 aa22.16■■□□□ 1.14
USP4-201ENST00000265560 CEP170BQ9Y4F5 1589 aaPredicted RBP22.16■■□□□ 1.14
USP4-201ENST00000265560 ANKRD36BQ8N2N9 1353 aa22.14■■□□□ 1.14
USP4-201ENST00000265560 FBLN1P23142 703 aa22.14■■□□□ 1.14
USP4-201ENST00000265560 CGNL1Q0VF96 1302 aa22.14■■□□□ 1.13
USP4-201ENST00000265560 ARHGAP23Q9P227 1491 aa22.14■■□□□ 1.13
USP4-201ENST00000265560 SLIT1O75093 1534 aa22.13■■□□□ 1.13
USP4-201ENST00000265560 ZBED9Q6R2W3 1325 aa22.13■■□□□ 1.13
USP4-201ENST00000265560 ANKLE2Q86XL3 938 aa22.13■■□□□ 1.13
USP4-201ENST00000265560 NUDT16Q96DE0 195 aaKnown RBP22.13■■□□□ 1.13
USP4-201ENST00000265560 ATAD2Q6PL18 1390 aa22.12■■□□□ 1.13
USP4-201ENST00000265560 TERF2IPQ9NYB0 399 aa22.12■■□□□ 1.13
USP4-201ENST00000265560 KCNA6P17658 529 aa22.12■■□□□ 1.13
USP4-201ENST00000265560 SUPT16HQ9Y5B9 1047 aaKnown RBP22.12■■□□□ 1.13
USP4-201ENST00000265560 TBX22Q9Y458 520 aa22.11■■□□□ 1.13
USP4-201ENST00000265560 IRX6P78412 446 aaPredicted RBP22.11■■□□□ 1.13
USP4-201ENST00000265560 SETD1BQ9UPS6 1966 aaKnown RBP22.11■■□□□ 1.13
USP4-201ENST00000265560 CCDC146Q8IYE0 955 aa22.11■■□□□ 1.13
USP4-201ENST00000265560 PUS7Q96PZ0 661 aaKnown RBP22.11■■□□□ 1.13
USP4-201ENST00000265560 DLC1Q96QB1 1528 aa22.1■■□□□ 1.13
USP4-201ENST00000265560 WDR43Q15061 677 aaKnown RBP eCLIP22.1■■□□□ 1.13
USP4-201ENST00000265560 HDGFL2Q7Z4V5 671 aaPredicted RBP22.09■■□□□ 1.13
USP4-201ENST00000265560 PRR36Q9H6K5 1346 aa22.09■■□□□ 1.13
USP4-201ENST00000265560 NPC1L1Q9UHC9 1359 aa22.09■■□□□ 1.13
USP4-201ENST00000265560 FYB1O15117 783 aa22.09■■□□□ 1.13
USP4-201ENST00000265560 CD163L1Q9NR16 1453 aa22.08■■□□□ 1.13
USP4-201ENST00000265560 MED14O60244 1454 aa22.08■■□□□ 1.12
USP4-201ENST00000265560 MTHFSP49914 203 aa22.08■■□□□ 1.12
USP4-201ENST00000265560 FKBP8Q14318 412 aa22.08■■□□□ 1.12
USP4-201ENST00000265560 ZRANB1Q9UGI0 708 aa22.07■■□□□ 1.12
USP4-201ENST00000265560 PPIP5K1Q6PFW1 1433 aa22.06■■□□□ 1.12
USP4-201ENST00000265560 TECPR2O15040 1411 aa22.05■■□□□ 1.12
USP4-201ENST00000265560 FAM135BQ49AJ0 1406 aa22.05■■□□□ 1.12
USP4-201ENST00000265560 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.04■■□□□ 1.12
USP4-201ENST00000265560 PMFBP1Q8TBY8 1022 aa22.04■■□□□ 1.12
USP4-201ENST00000265560 CCDC61Q9Y6R9 512 aa22.04■■□□□ 1.12
USP4-201ENST00000265560 HSPA2P54652 639 aa22.03■■□□□ 1.12
USP4-201ENST00000265560 PPM1GO15355 546 aaPredicted RBP22.02■■□□□ 1.12
USP4-201ENST00000265560 SIRT1Q96EB6 747 aa22.02■■□□□ 1.12
USP4-201ENST00000265560 CPS1P31327 1500 aa22.02■■□□□ 1.12
USP4-201ENST00000265560 NME9Q86XW9 330 aa22.02■■□□□ 1.11
USP4-201ENST00000265560 CDCA7LQ96GN5 454 aa22.02■■□□□ 1.11
USP4-201ENST00000265560 NINLQ9Y2I6 1382 aa21.99■■□□□ 1.11
USP4-201ENST00000265560 KNDC1Q76NI1 1749 aa21.99■■□□□ 1.11
USP4-201ENST00000265560 SOX12O15370 315 aa21.97■■□□□ 1.11
USP4-201ENST00000265560 ACEP12821 1306 aa21.96■■□□□ 1.11
USP4-201ENST00000265560 APAF1O14727 1248 aa21.95■■□□□ 1.11
USP4-201ENST00000265560 NEUROD2Q15784 382 aa21.95■■□□□ 1.1
USP4-201ENST00000265560 ATP7BP35670 1465 aa21.95■■□□□ 1.1
USP4-201ENST00000265560 NEFLP07196 543 aa21.94■■□□□ 1.1
USP4-201ENST00000265560 C14orf37Q86TY3 774 aa21.94■■□□□ 1.1
USP4-201ENST00000265560 KDM4FA0A1W2PPD8 638 aa21.93■■□□□ 1.1
USP4-201ENST00000265560 RRP7AQ9Y3A4 280 aaKnown RBP21.93■■□□□ 1.1
USP4-201ENST00000265560 U2SURPO15042 1029 aaKnown RBP21.91■■□□□ 1.1
USP4-201ENST00000265560 ZNF142P52746 1687 aaPredicted RBP21.91■■□□□ 1.1
USP4-201ENST00000265560 RGPD8O14715 1765 aaPredicted RBP21.91■■□□□ 1.1
USP4-201ENST00000265560 BLMP54132 1417 aaPredicted RBP21.91■■□□□ 1.1
USP4-201ENST00000265560 NGDNQ8NEJ9 315 aaKnown RBP21.91■■□□□ 1.1
USP4-201ENST00000265560 NUDCQ9Y266 331 aa21.91■■□□□ 1.1
USP4-201ENST00000265560 NPHP4O75161 1426 aaPredicted RBP21.9■■□□□ 1.1
USP4-201ENST00000265560 CPSF1Q10570 1443 aaKnown RBP21.9■■□□□ 1.1
USP4-201ENST00000265560 U2AF1L5P0DN76 240 aaPredicted RBP21.9■■□□□ 1.1
USP4-201ENST00000265560 U2AF1Q01081 240 aaKnown RBP eCLIP21.9■■□□□ 1.1
USP4-201ENST00000265560 RRS1Q15050 365 aaKnown RBP21.9■■□□□ 1.1
USP4-201ENST00000265560 POLR3AO14802 1390 aaPredicted RBP21.89■■□□□ 1.1
USP4-201ENST00000265560 USP32Q8NFA0 1604 aa21.89■■□□□ 1.1
USP4-201ENST00000265560 NSD2O96028 1365 aa21.89■■□□□ 1.09
USP4-201ENST00000265560 PLEKHG5O94827 1062 aa21.89■■□□□ 1.09
USP4-201ENST00000265560 CFAP53Q96M91 514 aa21.89■■□□□ 1.09
USP4-201ENST00000265560 EMILIN1Q9Y6C2 1016 aa21.89■■□□□ 1.09
USP4-201ENST00000265560 NUTM2GQ5VZR2 741 aa21.88■■□□□ 1.09
USP4-201ENST00000265560 PTCH1Q13635 1447 aa21.88■■□□□ 1.09
USP4-201ENST00000265560 NKTRP30414 1462 aaKnown RBP21.87■■□□□ 1.09
USP4-201ENST00000265560 DIP2AQ14689 1571 aa21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms