RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 EVC2Q86UK5 1308 aa17.24■□□□□ 0.35
SPTLC1-201ENST00000262554 ADAMTS8Q9UP79 889 aa17.23■□□□□ 0.35
SPTLC1-201ENST00000262554 SALL2Q9Y467 1007 aaPredicted RBP17.23■□□□□ 0.35
SPTLC1-201ENST00000262554 TULP4Q9NRJ4 1543 aa17.21■□□□□ 0.35
SPTLC1-201ENST00000262554 USP32Q8NFA0 1604 aa17.21■□□□□ 0.35
SPTLC1-201ENST00000262554 MLECQ14165 292 aa17.21■□□□□ 0.35
SPTLC1-201ENST00000262554 NSD3Q9BZ95 1437 aa17.21■□□□□ 0.34
SPTLC1-201ENST00000262554 SLC12A5Q9H2X9 1139 aa17.2■□□□□ 0.34
SPTLC1-201ENST00000262554 ALKQ9UM73 1620 aa17.19■□□□□ 0.34
SPTLC1-201ENST00000262554 ESF1Q9H501 851 aaKnown RBP17.19■□□□□ 0.34
SPTLC1-201ENST00000262554 STK26Q9P289 416 aa17.18■□□□□ 0.34
SPTLC1-201ENST00000262554 A2ML1A8K2U0 1454 aa17.18■□□□□ 0.34
SPTLC1-201ENST00000262554 YTHDC2Q9H6S0 1430 aaKnown RBP17.18■□□□□ 0.34
SPTLC1-201ENST00000262554 PTPRMP28827 1452 aa17.17■□□□□ 0.34
SPTLC1-201ENST00000262554 RCAN3Q9UKA8 241 aa17.16■□□□□ 0.34
SPTLC1-201ENST00000262554 ANKRD36BQ8N2N9 1353 aa17.16■□□□□ 0.34
SPTLC1-201ENST00000262554 NINLQ9Y2I6 1382 aa17.15■□□□□ 0.34
SPTLC1-201ENST00000262554 CGNL1Q0VF96 1302 aa17.15■□□□□ 0.34
SPTLC1-201ENST00000262554 SAFB2Q14151 953 aaKnown RBP eCLIP17.15■□□□□ 0.34
SPTLC1-201ENST00000262554 MORC1Q86VD1 984 aa17.15■□□□□ 0.34
SPTLC1-201ENST00000262554 RIMS2Q9UQ26 1411 aa17.15■□□□□ 0.34
SPTLC1-201ENST00000262554 CDCA7LQ96GN5 454 aa17.14■□□□□ 0.33
SPTLC1-201ENST00000262554 POGKQ9P215 609 aa17.14■□□□□ 0.33
SPTLC1-201ENST00000262554 ZMYM3Q14202 1370 aa17.13■□□□□ 0.33
SPTLC1-201ENST00000262554 B4GALNT3Q6L9W6 998 aa17.13■□□□□ 0.33
SPTLC1-201ENST00000262554 PRAM1Q96QH2 718 aa17.13■□□□□ 0.33
SPTLC1-201ENST00000262554 CABP2Q9NPB3 220 aa17.13■□□□□ 0.33
SPTLC1-201ENST00000262554 POLR3AO14802 1390 aaPredicted RBP17.13■□□□□ 0.33
SPTLC1-201ENST00000262554 RRP1P56182 461 aaKnown RBP17.12■□□□□ 0.33
SPTLC1-201ENST00000262554 NSD2O96028 1365 aa17.12■□□□□ 0.33
SPTLC1-201ENST00000262554 SRPK2P78362 688 aaKnown RBP17.12■□□□□ 0.33
SPTLC1-201ENST00000262554 ATAD2Q6PL18 1390 aa17.11■□□□□ 0.33
SPTLC1-201ENST00000262554 SETD1AO15047 1707 aaKnown RBP17.1■□□□□ 0.33
SPTLC1-201ENST00000262554 DLC1Q96QB1 1528 aa17.1■□□□□ 0.33
SPTLC1-201ENST00000262554 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.1■□□□□ 0.33
SPTLC1-201ENST00000262554 PLEKHH1Q9ULM0 1364 aa17.09■□□□□ 0.33
SPTLC1-201ENST00000262554 MINK1Q8N4C8 1332 aaPredicted RBP17.09■□□□□ 0.33
SPTLC1-201ENST00000262554 SHPRHQ149N8 1683 aa17.08■□□□□ 0.32
SPTLC1-201ENST00000262554 ZNF521Q96K83 1311 aa17.07■□□□□ 0.32
SPTLC1-201ENST00000262554 CCDC146Q8IYE0 955 aa17.07■□□□□ 0.32
SPTLC1-201ENST00000262554 NGEFQ8N5V2 710 aa17.07■□□□□ 0.32
SPTLC1-201ENST00000262554 CCDC136Q96JN2 1154 aa17.07■□□□□ 0.32
SPTLC1-201ENST00000262554 TNRQ92752 1358 aa17.06■□□□□ 0.32
SPTLC1-201ENST00000262554 TNNT2P45379 298 aaPredicted RBP17.06■□□□□ 0.32
SPTLC1-201ENST00000262554 HDGFP51858 240 aaKnown RBP17.06■□□□□ 0.32
SPTLC1-201ENST00000262554 GOLGA2Q08379 1002 aa17.06■□□□□ 0.32
SPTLC1-201ENST00000262554 TERF2IPQ9NYB0 399 aa17.06■□□□□ 0.32
SPTLC1-201ENST00000262554 A0A1W2PP64 1363 aa17.06■□□□□ 0.32
SPTLC1-201ENST00000262554 SLC4A2P04920 1241 aa17.05■□□□□ 0.32
SPTLC1-201ENST00000262554 NRXN3Q9Y4C0 1643 aa17.05■□□□□ 0.32
SPTLC1-201ENST00000262554 ABCC11Q96J66 1382 aa17.05■□□□□ 0.32
SPTLC1-201ENST00000262554 CFAP53Q96M91 514 aa17.05■□□□□ 0.32
SPTLC1-201ENST00000262554 APAF1O14727 1248 aa17.04■□□□□ 0.32
SPTLC1-201ENST00000262554 ANKRD26Q9UPS8 1709 aa17.04■□□□□ 0.32
SPTLC1-201ENST00000262554 CDK19Q9BWU1 502 aa17.03■□□□□ 0.32
SPTLC1-201ENST00000262554 UBR1Q8IWV7 1749 aa17.03■□□□□ 0.32
SPTLC1-201ENST00000262554 MTHFSP49914 203 aa17.02■□□□□ 0.32
SPTLC1-201ENST00000262554 DUSP27Q5VZP5 1158 aa17.02■□□□□ 0.32
SPTLC1-201ENST00000262554 HDGFL2Q7Z4V5 671 aaPredicted RBP17.01■□□□□ 0.31
SPTLC1-201ENST00000262554 RBM19Q9Y4C8 960 aaKnown RBP17.01■□□□□ 0.31
SPTLC1-201ENST00000262554 KNDC1Q76NI1 1749 aa17.01■□□□□ 0.31
SPTLC1-201ENST00000262554 CD163L1Q9NR16 1453 aa17.01■□□□□ 0.31
SPTLC1-201ENST00000262554 SLFN5Q08AF3 891 aa17■□□□□ 0.31
SPTLC1-201ENST00000262554 MED14O60244 1454 aa16.99■□□□□ 0.31
SPTLC1-201ENST00000262554 KIF20BQ96Q89 1820 aa16.99■□□□□ 0.31
SPTLC1-201ENST00000262554 WAPLQ7Z5K2 1190 aa16.99■□□□□ 0.31
SPTLC1-201ENST00000262554 EXOC6Q8TAG9 804 aa16.99■□□□□ 0.31
SPTLC1-201ENST00000262554 TMEM2Q9UHN6 1383 aa16.98■□□□□ 0.31
SPTLC1-201ENST00000262554 RUNDC1Q96C34 613 aa16.98■□□□□ 0.31
SPTLC1-201ENST00000262554 METP08581 1390 aa16.97■□□□□ 0.31
SPTLC1-201ENST00000262554 TRMT2AQ8IZ69 625 aaKnown RBP16.97■□□□□ 0.31
SPTLC1-201ENST00000262554 E9PSI1 815 aa16.97■□□□□ 0.31
SPTLC1-201ENST00000262554 CABP1Q9NZU7 370 aa16.97■□□□□ 0.31
SPTLC1-201ENST00000262554 NLRP1Q9C000 1473 aa16.96■□□□□ 0.31
SPTLC1-201ENST00000262554 GGNBP2Q9H3C7 697 aa16.96■□□□□ 0.31
SPTLC1-201ENST00000262554 ATP7BP35670 1465 aa16.96■□□□□ 0.31
SPTLC1-201ENST00000262554 FYB1O15117 783 aa16.95■□□□□ 0.3
SPTLC1-201ENST00000262554 SIRT1Q96EB6 747 aa16.95■□□□□ 0.3
SPTLC1-201ENST00000262554 NKTRP30414 1462 aaKnown RBP16.95■□□□□ 0.3
SPTLC1-201ENST00000262554 TECPR2O15040 1411 aa16.95■□□□□ 0.3
SPTLC1-201ENST00000262554 FAM135BQ49AJ0 1406 aa16.95■□□□□ 0.3
SPTLC1-201ENST00000262554 CPS1P31327 1500 aa16.95■□□□□ 0.3
SPTLC1-201ENST00000262554 PLIN1O60240 522 aa16.95■□□□□ 0.3
SPTLC1-201ENST00000262554 IQSEC2Q5JU85 1478 aa16.94■□□□□ 0.3
SPTLC1-201ENST00000262554 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.93■□□□□ 0.3
SPTLC1-201ENST00000262554 C3P01024 1663 aa16.93■□□□□ 0.3
SPTLC1-201ENST00000262554 WASLO00401 505 aaPredicted RBP16.93■□□□□ 0.3
SPTLC1-201ENST00000262554 TXNDC2Q86VQ3 553 aa16.93■□□□□ 0.3
SPTLC1-201ENST00000262554 WWC1Q8IX03 1113 aa16.93■□□□□ 0.3
SPTLC1-201ENST00000262554 FER1L4A9Z1Z3 1794 aa16.92■□□□□ 0.3
SPTLC1-201ENST00000262554 TCP11L2Q8N4U5 519 aa16.91■□□□□ 0.3
SPTLC1-201ENST00000262554 SPINK5Q9NQ38 1064 aaPredicted RBP16.91■□□□□ 0.3
SPTLC1-201ENST00000262554 U2AF1L5P0DN76 240 aaPredicted RBP16.9■□□□□ 0.3
SPTLC1-201ENST00000262554 U2AF1Q01081 240 aaKnown RBP eCLIP16.9■□□□□ 0.3
SPTLC1-201ENST00000262554 PLEKHG1Q9ULL1 1385 aa16.9■□□□□ 0.3
SPTLC1-201ENST00000262554 CRBNQ96SW2 442 aa16.9■□□□□ 0.3
SPTLC1-201ENST00000262554 PPIP5K1Q6PFW1 1433 aa16.89■□□□□ 0.29
SPTLC1-201ENST00000262554 COL3A1P02461 1466 aaPredicted RBP16.89■□□□□ 0.29
SPTLC1-201ENST00000262554 NEUROD2Q15784 382 aa16.88■□□□□ 0.29
SPTLC1-201ENST00000262554 CCDC27Q2M243 656 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms