RNA–Protein interactions for RNA: ENST00000250448.2

FOXA1-201, Transcript of forkhead box A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FOXA1, Length 2,862 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-201ENST00000250448 ALKQ9UM73 1620 aa22.47■■□□□ 1.19
FOXA1-201ENST00000250448 PARD3Q8TEW0 1356 aa22.47■■□□□ 1.19
FOXA1-201ENST00000250448 CDCA8Q53HL2 280 aa22.46■■□□□ 1.19
FOXA1-201ENST00000250448 QRICH2Q9H0J4 1663 aa22.46■■□□□ 1.19
FOXA1-201ENST00000250448 RCAN3Q9UKA8 241 aa22.46■■□□□ 1.19
FOXA1-201ENST00000250448 NLRP13Q86W25 1043 aa22.45■■□□□ 1.18
FOXA1-201ENST00000250448 EXOC6Q8TAG9 804 aa22.45■■□□□ 1.18
FOXA1-201ENST00000250448 MYO3AQ8NEV4 1616 aa22.44■■□□□ 1.18
FOXA1-201ENST00000250448 ARHGEF28Q8N1W1 1705 aaKnown RBP22.44■■□□□ 1.18
FOXA1-201ENST00000250448 UBR1Q8IWV7 1749 aa22.44■■□□□ 1.18
FOXA1-201ENST00000250448 PRAM1Q96QH2 718 aa22.44■■□□□ 1.18
FOXA1-201ENST00000250448 PTPRMP28827 1452 aa22.43■■□□□ 1.18
FOXA1-201ENST00000250448 YTHDC2Q9H6S0 1430 aaKnown RBP22.43■■□□□ 1.18
FOXA1-201ENST00000250448 PDE3BQ13370 1112 aa22.43■■□□□ 1.18
FOXA1-201ENST00000250448 KDM5AP29375 1690 aaKnown RBP22.43■■□□□ 1.18
FOXA1-201ENST00000250448 LTKP29376 864 aa22.42■■□□□ 1.18
FOXA1-201ENST00000250448 TMEM2Q9UHN6 1383 aa22.42■■□□□ 1.18
FOXA1-201ENST00000250448 MINK1Q8N4C8 1332 aaPredicted RBP22.42■■□□□ 1.18
FOXA1-201ENST00000250448 TCERG1O14776 1098 aaKnown RBP22.41■■□□□ 1.18
FOXA1-201ENST00000250448 POGKQ9P215 609 aa22.41■■□□□ 1.18
FOXA1-201ENST00000250448 MYOM1P52179 1685 aa22.41■■□□□ 1.18
FOXA1-201ENST00000250448 RIMS1Q86UR5 1692 aaKnown RBP22.4■■□□□ 1.18
FOXA1-201ENST00000250448 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.4■■□□□ 1.18
FOXA1-201ENST00000250448 CABP2Q9NPB3 220 aa22.4■■□□□ 1.18
FOXA1-201ENST00000250448 SBNO2Q9Y2G9 1366 aa22.4■■□□□ 1.18
FOXA1-201ENST00000250448 METP08581 1390 aa22.39■■□□□ 1.18
FOXA1-201ENST00000250448 RTL5Q5HYW3 569 aaPredicted RBP22.39■■□□□ 1.18
FOXA1-201ENST00000250448 WAPLQ7Z5K2 1190 aa22.39■■□□□ 1.18
FOXA1-201ENST00000250448 SLC12A5Q9H2X9 1139 aa22.38■■□□□ 1.17
FOXA1-201ENST00000250448 SALL2Q9Y467 1007 aaPredicted RBP22.38■■□□□ 1.17
FOXA1-201ENST00000250448 TXNDC2Q86VQ3 553 aa22.38■■□□□ 1.17
FOXA1-201ENST00000250448 KNSTRNQ9Y448 316 aa22.38■■□□□ 1.17
FOXA1-201ENST00000250448 NRXN3Q9Y4C0 1643 aa22.37■■□□□ 1.17
FOXA1-201ENST00000250448 NLRP1Q9C000 1473 aa22.37■■□□□ 1.17
FOXA1-201ENST00000250448 SLC26A8Q96RN1 970 aa22.35■■□□□ 1.17
FOXA1-201ENST00000250448 TULP4Q9NRJ4 1543 aa22.35■■□□□ 1.17
FOXA1-201ENST00000250448 PLEKHH1Q9ULM0 1364 aa22.35■■□□□ 1.17
FOXA1-201ENST00000250448 HDGFP51858 240 aaKnown RBP22.35■■□□□ 1.17
FOXA1-201ENST00000250448 CARD14Q9BXL6 1004 aa22.35■■□□□ 1.17
FOXA1-201ENST00000250448 BLMP54132 1417 aaPredicted RBP22.34■■□□□ 1.17
FOXA1-201ENST00000250448 SETD1AO15047 1707 aaKnown RBP22.34■■□□□ 1.17
FOXA1-201ENST00000250448 INSRP06213 1382 aa22.34■■□□□ 1.17
FOXA1-201ENST00000250448 EVC2Q86UK5 1308 aa22.34■■□□□ 1.17
FOXA1-201ENST00000250448 PDE4AP27815 886 aa22.33■■□□□ 1.17
FOXA1-201ENST00000250448 SRPK2P78362 688 aaKnown RBP22.33■■□□□ 1.17
FOXA1-201ENST00000250448 NPM2Q86SE8 214 aaKnown RBP22.33■■□□□ 1.17
FOXA1-201ENST00000250448 MS4A1P11836 297 aa22.32■■□□□ 1.16
FOXA1-201ENST00000250448 AMER1Q5JTC6 1135 aaPredicted RBP22.32■■□□□ 1.16
FOXA1-201ENST00000250448 CDCA7LQ96GN5 454 aa22.31■■□□□ 1.16
FOXA1-201ENST00000250448 BACH2Q9BYV9 841 aa22.3■■□□□ 1.16
FOXA1-201ENST00000250448 EID1Q9Y6B2 187 aa22.3■■□□□ 1.16
FOXA1-201ENST00000250448 THEMISQ8N1K5 641 aaPredicted RBP22.28■■□□□ 1.16
FOXA1-201ENST00000250448 ADAMTS13Q76LX8 1427 aa22.27■■□□□ 1.16
FOXA1-201ENST00000250448 ADAMTSL3P82987 1691 aa22.27■■□□□ 1.16
FOXA1-201ENST00000250448 UBE2Q2Q8WVN8 375 aa22.25■■□□□ 1.15
FOXA1-201ENST00000250448 CDK19Q9BWU1 502 aa22.25■■□□□ 1.15
FOXA1-201ENST00000250448 ABCC11Q96J66 1382 aa22.24■■□□□ 1.15
FOXA1-201ENST00000250448 PLEKHG1Q9ULL1 1385 aa22.24■■□□□ 1.15
FOXA1-201ENST00000250448 NSD3Q9BZ95 1437 aa22.23■■□□□ 1.15
FOXA1-201ENST00000250448 PLIN1O60240 522 aa22.22■■□□□ 1.15
FOXA1-201ENST00000250448 CEP170BQ9Y4F5 1589 aaPredicted RBP22.22■■□□□ 1.15
FOXA1-201ENST00000250448 CRBNQ96SW2 442 aa22.22■■□□□ 1.15
FOXA1-201ENST00000250448 ARHGAP23Q9P227 1491 aa22.21■■□□□ 1.15
FOXA1-201ENST00000250448 SLIT1O75093 1534 aa22.21■■□□□ 1.15
FOXA1-201ENST00000250448 TNNT2P45379 298 aaPredicted RBP22.21■■□□□ 1.15
FOXA1-201ENST00000250448 PPP2R1AP30153 589 aa22.2■■□□□ 1.14
FOXA1-201ENST00000250448 ROBO2Q9HCK4 1378 aa22.2■■□□□ 1.14
FOXA1-201ENST00000250448 DLC1Q96QB1 1528 aa22.18■■□□□ 1.14
FOXA1-201ENST00000250448 LAS1LQ9Y4W2 734 aaKnown RBP22.18■■□□□ 1.14
FOXA1-201ENST00000250448 PTPRUQ92729 1446 aa22.18■■□□□ 1.14
FOXA1-201ENST00000250448 NCKAP5LQ9HCH0 1330 aa22.17■■□□□ 1.14
FOXA1-201ENST00000250448 CABP1Q9NZU7 370 aa22.17■■□□□ 1.14
FOXA1-201ENST00000250448 NUTM2FA1L443 756 aa22.16■■□□□ 1.14
FOXA1-201ENST00000250448 A0A1W2PP64 1363 aa22.15■■□□□ 1.14
FOXA1-201ENST00000250448 USP35Q9P2H5 1018 aa22.15■■□□□ 1.14
FOXA1-201ENST00000250448 AMOTL2Q9Y2J4 779 aa22.15■■□□□ 1.14
FOXA1-201ENST00000250448 NEFMP07197 916 aa22.14■■□□□ 1.14
FOXA1-201ENST00000250448 PUS7Q96PZ0 661 aaKnown RBP22.14■■□□□ 1.13
FOXA1-201ENST00000250448 MED14O60244 1454 aa22.14■■□□□ 1.13
FOXA1-201ENST00000250448 ANKRD36BQ8N2N9 1353 aa22.14■■□□□ 1.13
FOXA1-201ENST00000250448 WASLO00401 505 aaPredicted RBP22.13■■□□□ 1.13
FOXA1-201ENST00000250448 ATAD2Q6PL18 1390 aa22.13■■□□□ 1.13
FOXA1-201ENST00000250448 PPM1GO15355 546 aaPredicted RBP22.13■■□□□ 1.13
FOXA1-201ENST00000250448 TECPR2O15040 1411 aa22.12■■□□□ 1.13
FOXA1-201ENST00000250448 SKAP1Q86WV1 359 aa22.12■■□□□ 1.13
FOXA1-201ENST00000250448 DDRGK1Q96HY6 314 aa22.12■■□□□ 1.13
FOXA1-201ENST00000250448 TBX22Q9Y458 520 aa22.11■■□□□ 1.13
FOXA1-201ENST00000250448 NPC1L1Q9UHC9 1359 aa22.11■■□□□ 1.13
FOXA1-201ENST00000250448 MORC1Q86VD1 984 aa22.11■■□□□ 1.13
FOXA1-201ENST00000250448 SETD1BQ9UPS6 1966 aaKnown RBP22.1■■□□□ 1.13
FOXA1-201ENST00000250448 CPS1P31327 1500 aa22.1■■□□□ 1.13
FOXA1-201ENST00000250448 ANKLE2Q86XL3 938 aa22.1■■□□□ 1.13
FOXA1-201ENST00000250448 ADAMTS8Q9UP79 889 aa22.1■■□□□ 1.13
FOXA1-201ENST00000250448 C20orf194Q5TEA3 1177 aa22.09■■□□□ 1.13
FOXA1-201ENST00000250448 FAM135BQ49AJ0 1406 aa22.09■■□□□ 1.13
FOXA1-201ENST00000250448 KNDC1Q76NI1 1749 aa22.09■■□□□ 1.13
FOXA1-201ENST00000250448 CD163L1Q9NR16 1453 aa22.09■■□□□ 1.13
FOXA1-201ENST00000250448 CGNL1Q0VF96 1302 aa22.09■■□□□ 1.13
FOXA1-201ENST00000250448 KDM2BQ8NHM5 1336 aa22.09■■□□□ 1.13
FOXA1-201ENST00000250448 GGNBP2Q9H3C7 697 aa22.09■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms