RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 SYAP1Q96A49 352 aaPredicted RBP5.68□□□□□ -1.5
VPS13C-201ENST00000249837 MVPQ14764 893 aaKnown RBP5.68□□□□□ -1.5
VPS13C-201ENST00000249837 PZPP20742 1482 aa5.68□□□□□ -1.5
VPS13C-201ENST00000249837 CCDC141Q6ZP82 1450 aa5.68□□□□□ -1.5
VPS13C-201ENST00000249837 RALGAPBQ86X10 1494 aa5.68□□□□□ -1.5
VPS13C-201ENST00000249837 FAM43AQ8N2R8 423 aa5.68□□□□□ -1.5
VPS13C-201ENST00000249837 MAGI1Q96QZ7 1491 aaPredicted RBP5.68□□□□□ -1.5
VPS13C-201ENST00000249837 AAMPQ13685 434 aa5.68□□□□□ -1.5
VPS13C-201ENST00000249837 CAVIN1Q6NZI2 390 aaKnown RBP5.68□□□□□ -1.5
VPS13C-201ENST00000249837 RNF214Q8ND24 703 aa5.68□□□□□ -1.5
VPS13C-201ENST00000249837 COG3Q96JB2 828 aa5.68□□□□□ -1.5
VPS13C-201ENST00000249837 PCDHB15Q9Y5E8 787 aa5.68□□□□□ -1.5
VPS13C-201ENST00000249837 HDGFP51858 240 aaKnown RBP5.68□□□□□ -1.5
VPS13C-201ENST00000249837 LAMC3Q9Y6N6 1575 aa5.68□□□□□ -1.5
VPS13C-201ENST00000249837 SEC24BO95487 1268 aa5.67□□□□□ -1.5
VPS13C-201ENST00000249837 CDC45O75419 566 aa5.67□□□□□ -1.5
VPS13C-201ENST00000249837 TCOF1Q13428 1488 aaKnown RBP5.67□□□□□ -1.5
VPS13C-201ENST00000249837 TMPOP42166 694 aaKnown RBP5.67□□□□□ -1.5
VPS13C-201ENST00000249837 REC8O95072 547 aa5.67□□□□□ -1.5
VPS13C-201ENST00000249837 ATF7IPQ6VMQ6 1270 aa5.67□□□□□ -1.5
VPS13C-201ENST00000249837 MRE11P49959 708 aa5.67□□□□□ -1.5
VPS13C-201ENST00000249837 AMER1Q5JTC6 1135 aaPredicted RBP5.67□□□□□ -1.5
VPS13C-201ENST00000249837 R3HCC1Q9Y3T6 440 aaKnown RBP5.67□□□□□ -1.5
VPS13C-201ENST00000249837 TBC1D2Q9BYX2 928 aa5.67□□□□□ -1.5
VPS13C-201ENST00000249837 KIF16BQ96L93 1317 aa5.67□□□□□ -1.5
VPS13C-201ENST00000249837 GCC2Q8IWJ2 1684 aa5.67□□□□□ -1.5
VPS13C-201ENST00000249837 EIF2S2P20042 333 aaKnown RBP5.66□□□□□ -1.5
VPS13C-201ENST00000249837 FAM13BQ9NYF5 915 aa5.66□□□□□ -1.5
VPS13C-201ENST00000249837 CHAF1AQ13111 956 aaPredicted RBP5.66□□□□□ -1.5
VPS13C-201ENST00000249837 STAC3Q96MF2 364 aa5.66□□□□□ -1.5
VPS13C-201ENST00000249837 PRAM1Q96QH2 718 aa5.66□□□□□ -1.5
VPS13C-201ENST00000249837 SPINK5Q9NQ38 1064 aaPredicted RBP5.66□□□□□ -1.5
VPS13C-201ENST00000249837 ANO2Q9NQ90 1003 aa5.66□□□□□ -1.5
VPS13C-201ENST00000249837 RAPGEF6Q8TEU7 1601 aa5.66□□□□□ -1.5
VPS13C-201ENST00000249837 TSPYL4Q9UJ04 414 aa5.66□□□□□ -1.5
VPS13C-201ENST00000249837 PRAG1Q86YV5 1406 aa5.66□□□□□ -1.5
VPS13C-201ENST00000249837 GNAI1P63096 354 aa5.66□□□□□ -1.5
VPS13C-201ENST00000249837 CABP1Q9NZU7 370 aa5.66□□□□□ -1.5
VPS13C-201ENST00000249837 CHMP3Q9Y3E7 222 aa5.66□□□□□ -1.5
VPS13C-201ENST00000249837 LRPPRCP42704 1394 aaKnown RBP5.66□□□□□ -1.5
VPS13C-201ENST00000249837 PLEKHH1Q9ULM0 1364 aa5.66□□□□□ -1.5
VPS13C-201ENST00000249837 SMARCA5O60264 1052 aaPredicted RBP5.66□□□□□ -1.5
VPS13C-201ENST00000249837 NKTRP30414 1462 aaKnown RBP5.66□□□□□ -1.5
VPS13C-201ENST00000249837 PARD3Q8TEW0 1356 aa5.66□□□□□ -1.5
VPS13C-201ENST00000249837 RNF123Q5XPI4 1314 aa5.66□□□□□ -1.5
VPS13C-201ENST00000249837 PRPF40AO75400 957 aaKnown RBP5.66□□□□□ -1.5
VPS13C-201ENST00000249837 NUCB2P80303 420 aa5.65□□□□□ -1.5
VPS13C-201ENST00000249837 CDK19Q9BWU1 502 aa5.65□□□□□ -1.5
VPS13C-201ENST00000249837 SCAPERQ9BY12 1400 aa5.65□□□□□ -1.5
VPS13C-201ENST00000249837 ITSN2Q9NZM3 1697 aa5.65□□□□□ -1.5
VPS13C-201ENST00000249837 RLBP1P12271 317 aa5.65□□□□□ -1.5
VPS13C-201ENST00000249837 CHD1LQ86WJ1 897 aa5.65□□□□□ -1.5
VPS13C-201ENST00000249837 NUP153P49790 1475 aaKnown RBP5.65□□□□□ -1.5
VPS13C-201ENST00000249837 KIF14Q15058 1648 aa5.65□□□□□ -1.5
VPS13C-201ENST00000249837 GRIN2AQ12879 1464 aa5.65□□□□□ -1.5
VPS13C-201ENST00000249837 WDR62O43379 1518 aa5.65□□□□□ -1.51
VPS13C-201ENST00000249837 TESK2Q96S53 571 aa5.65□□□□□ -1.51
VPS13C-201ENST00000249837 ADGRF5Q8IZF2 1346 aa5.65□□□□□ -1.51
VPS13C-201ENST00000249837 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP5.65□□□□□ -1.51
VPS13C-201ENST00000249837 MAGI3Q5TCQ9 1506 aa5.64□□□□□ -1.51
VPS13C-201ENST00000249837 TWISTNBQ3B726 338 aaPredicted RBP5.64□□□□□ -1.51
VPS13C-201ENST00000249837 NUTM2GQ5VZR2 741 aa5.64□□□□□ -1.51
VPS13C-201ENST00000249837 SULT6B1Q6IMI4 303 aa5.64□□□□□ -1.51
VPS13C-201ENST00000249837 GPATCH3Q96I76 525 aa5.64□□□□□ -1.51
VPS13C-201ENST00000249837 BCL11BQ9C0K0 894 aaPredicted RBP5.64□□□□□ -1.51
VPS13C-201ENST00000249837 RABEP1Q15276 862 aa5.64□□□□□ -1.51
VPS13C-201ENST00000249837 KIF21AQ7Z4S6 1674 aa5.64□□□□□ -1.51
VPS13C-201ENST00000249837 PRKCSHP14314 528 aaPredicted RBP5.64□□□□□ -1.51
VPS13C-201ENST00000249837 CARD14Q9BXL6 1004 aa5.64□□□□□ -1.51
VPS13C-201ENST00000249837 PER1O15534 1290 aaPredicted RBP5.64□□□□□ -1.51
VPS13C-201ENST00000249837 HSP90B1P14625 803 aaKnown RBP5.64□□□□□ -1.51
VPS13C-201ENST00000249837 NEK4P51957 841 aa5.64□□□□□ -1.51
VPS13C-201ENST00000249837 ZNF428Q96B54 188 aa5.64□□□□□ -1.51
VPS13C-201ENST00000249837 GRPEL1Q9HAV7 217 aa5.64□□□□□ -1.51
VPS13C-201ENST00000249837 SSFA2P28290 1259 aa5.64□□□□□ -1.51
VPS13C-201ENST00000249837 FOSBP53539 338 aa5.64□□□□□ -1.51
VPS13C-201ENST00000249837 C8orf34Q49A92 452 aa5.64□□□□□ -1.51
VPS13C-201ENST00000249837 INTS3Q68E01 1043 aaKnown RBP5.64□□□□□ -1.51
VPS13C-201ENST00000249837 PHF14O94880 888 aa5.64□□□□□ -1.51
VPS13C-201ENST00000249837 NFE2L2Q16236 605 aa5.64□□□□□ -1.51
VPS13C-201ENST00000249837 RBM10P98175 930 aaKnown RBP5.63□□□□□ -1.51
VPS13C-201ENST00000249837 CCDC27Q2M243 656 aa5.63□□□□□ -1.51
VPS13C-201ENST00000249837 ATP10BO94823 1461 aa5.63□□□□□ -1.51
VPS13C-201ENST00000249837 K7ELQ4 463 aaPredicted RBP5.63□□□□□ -1.51
VPS13C-201ENST00000249837 FBLN1P23142 703 aa5.63□□□□□ -1.51
VPS13C-201ENST00000249837 FKBP5Q13451 457 aaPredicted RBP5.63□□□□□ -1.51
VPS13C-201ENST00000249837 DCTN1Q14203 1278 aa5.63□□□□□ -1.51
VPS13C-201ENST00000249837 CYB5RLQ6IPT4 315 aa5.63□□□□□ -1.51
VPS13C-201ENST00000249837 FBXW7Q969H0 707 aa5.63□□□□□ -1.51
VPS13C-201ENST00000249837 RAPGEF3O95398 923 aa5.63□□□□□ -1.51
VPS13C-201ENST00000249837 TEX14Q8IWB6 1497 aa5.63□□□□□ -1.51
VPS13C-201ENST00000249837 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.63□□□□□ -1.51
VPS13C-201ENST00000249837 DIAPH3Q9NSV4 1193 aa5.63□□□□□ -1.51
VPS13C-201ENST00000249837 MIS18AQ9NYP9 233 aa5.63□□□□□ -1.51
VPS13C-201ENST00000249837 NINLQ9Y2I6 1382 aa5.63□□□□□ -1.51
VPS13C-201ENST00000249837 DNMT1P26358 1616 aaKnown RBP5.62□□□□□ -1.51
VPS13C-201ENST00000249837 CSB-PGBD3P0DP91 1061 aa5.62□□□□□ -1.51
VPS13C-201ENST00000249837 RRS1Q15050 365 aaKnown RBP5.62□□□□□ -1.51
VPS13C-201ENST00000249837 ZNF330Q9Y3S2 320 aaPredicted RBP5.62□□□□□ -1.51
VPS13C-201ENST00000249837 SMC3Q9UQE7 1217 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms