RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 WAPLQ7Z5K2 1190 aa30.97■■■□□ 2.55
CDX1-201ENST00000231656 PIK3R4Q99570 1358 aa30.97■■■□□ 2.55
CDX1-201ENST00000231656 FAM135BQ49AJ0 1406 aa30.97■■■□□ 2.55
CDX1-201ENST00000231656 PLEKHH1Q9ULM0 1364 aa30.97■■■□□ 2.55
CDX1-201ENST00000231656 AMOTL2Q9Y2J4 779 aa30.96■■■□□ 2.55
CDX1-201ENST00000231656 CCDC184Q52MB2 194 aa30.95■■■□□ 2.55
CDX1-201ENST00000231656 ROBO2Q9HCK4 1378 aa30.95■■■□□ 2.54
CDX1-201ENST00000231656 TULP4Q9NRJ4 1543 aa30.93■■■□□ 2.54
CDX1-201ENST00000231656 XRN1Q8IZH2 1706 aaKnown RBP30.93■■■□□ 2.54
CDX1-201ENST00000231656 MINK1Q8N4C8 1332 aaPredicted RBP30.92■■■□□ 2.54
CDX1-201ENST00000231656 CHD2O14647 1828 aaKnown RBP30.92■■■□□ 2.54
CDX1-201ENST00000231656 EVC2Q86UK5 1308 aa30.92■■■□□ 2.54
CDX1-201ENST00000231656 PTCH1Q13635 1447 aa30.89■■■□□ 2.54
CDX1-201ENST00000231656 MYOM1P52179 1685 aa30.88■■■□□ 2.53
CDX1-201ENST00000231656 MRS2Q9HD23 443 aa30.85■■■□□ 2.53
CDX1-201ENST00000231656 STRCQ7RTU9 1775 aa30.85■■■□□ 2.53
CDX1-201ENST00000231656 KCNA6P17658 529 aa30.84■■■□□ 2.53
CDX1-201ENST00000231656 PUS7Q96PZ0 661 aaKnown RBP30.84■■■□□ 2.53
CDX1-201ENST00000231656 SIPA1L2Q9P2F8 1722 aaPredicted RBP30.82■■■□□ 2.52
CDX1-201ENST00000231656 KTN1Q86UP2 1357 aaKnown RBP30.81■■■□□ 2.52
CDX1-201ENST00000231656 CABP2Q9NPB3 220 aa30.81■■■□□ 2.52
CDX1-201ENST00000231656 SRPK2P78362 688 aaKnown RBP30.79■■■□□ 2.52
CDX1-201ENST00000231656 CDK19Q9BWU1 502 aa30.79■■■□□ 2.52
CDX1-201ENST00000231656 PANK3Q9H999 370 aa30.79■■■□□ 2.52
CDX1-201ENST00000231656 ADGRB2O60241 1585 aa30.77■■■□□ 2.52
CDX1-201ENST00000231656 PER1O15534 1290 aaPredicted RBP30.77■■■□□ 2.52
CDX1-201ENST00000231656 NWD1Q149M9 1564 aa30.76■■■□□ 2.51
CDX1-201ENST00000231656 WASLO00401 505 aaPredicted RBP30.75■■■□□ 2.51
CDX1-201ENST00000231656 HNRNPUQ00839 825 aaKnown RBP eCLIP30.75■■■□□ 2.51
CDX1-201ENST00000231656 RALBP1Q15311 655 aa30.73■■■□□ 2.51
CDX1-201ENST00000231656 ATAD2Q6PL18 1390 aa30.73■■■□□ 2.51
CDX1-201ENST00000231656 CNGB1Q14028 1251 aaPredicted RBP30.72■■■□□ 2.51
CDX1-201ENST00000231656 TMC1Q8TDI8 760 aa30.71■■■□□ 2.51
CDX1-201ENST00000231656 FAM9BQ8IZU0 186 aa30.7■■■□□ 2.51
CDX1-201ENST00000231656 SLC12A5Q9H2X9 1139 aa30.7■■■□□ 2.51
CDX1-201ENST00000231656 PARD3Q8TEW0 1356 aa30.7■■■□□ 2.5
CDX1-201ENST00000231656 MYBBP1AQ9BQG0 1328 aaKnown RBP30.68■■■□□ 2.5
CDX1-201ENST00000231656 NINLQ9Y2I6 1382 aa30.67■■■□□ 2.5
CDX1-201ENST00000231656 STRCP1A6NGW2 1772 aa30.65■■■□□ 2.5
CDX1-201ENST00000231656 NKTRP30414 1462 aaKnown RBP30.64■■■□□ 2.5
CDX1-201ENST00000231656 NALCNQ8IZF0 1738 aa30.64■■■□□ 2.5
CDX1-201ENST00000231656 BRD4O60885 1362 aaPredicted RBP30.64■■■□□ 2.5
CDX1-201ENST00000231656 RBM33Q96EV2 1170 aaKnown RBP30.62■■■□□ 2.49
CDX1-201ENST00000231656 NUDT16Q96DE0 195 aaKnown RBP30.61■■■□□ 2.49
CDX1-201ENST00000231656 CARD14Q9BXL6 1004 aa30.61■■■□□ 2.49
CDX1-201ENST00000231656 KNSTRNQ9Y448 316 aa30.61■■■□□ 2.49
CDX1-201ENST00000231656 ATP7BP35670 1465 aa30.6■■■□□ 2.49
CDX1-201ENST00000231656 ANKRD36BQ8N2N9 1353 aa30.6■■■□□ 2.49
CDX1-201ENST00000231656 CABP1Q9NZU7 370 aa30.59■■■□□ 2.49
CDX1-201ENST00000231656 PRR36Q9H6K5 1346 aa30.59■■■□□ 2.49
CDX1-201ENST00000231656 PROSER2Q86WR7 435 aaPredicted RBP30.58■■■□□ 2.49
CDX1-201ENST00000231656 PNISRQ8TF01 805 aaKnown RBP30.58■■■□□ 2.49
CDX1-201ENST00000231656 ADGRL3Q9HAR2 1447 aa30.57■■■□□ 2.48
CDX1-201ENST00000231656 CCDC61Q9Y6R9 512 aa30.56■■■□□ 2.48
CDX1-201ENST00000231656 CD163L1Q9NR16 1453 aa30.56■■■□□ 2.48
CDX1-201ENST00000231656 PPIP5K1Q6PFW1 1433 aa30.56■■■□□ 2.48
CDX1-201ENST00000231656 CDC42BPGQ6DT37 1551 aa30.56■■■□□ 2.48
CDX1-201ENST00000231656 A0A1W2PP64 1363 aa30.55■■■□□ 2.48
CDX1-201ENST00000231656 ZBED9Q6R2W3 1325 aa30.55■■■□□ 2.48
CDX1-201ENST00000231656 DMRT2Q9Y5R5 561 aa30.55■■■□□ 2.48
CDX1-201ENST00000231656 FMN2Q9NZ56 1722 aa30.55■■■□□ 2.48
CDX1-201ENST00000231656 USP32Q8NFA0 1604 aa30.55■■■□□ 2.48
CDX1-201ENST00000231656 TOPAZ1Q8N9V7 1692 aa30.54■■■□□ 2.48
CDX1-201ENST00000231656 NUTM2FA1L443 756 aa30.54■■■□□ 2.48
CDX1-201ENST00000231656 AMER1Q5JTC6 1135 aaPredicted RBP30.54■■■□□ 2.48
CDX1-201ENST00000231656 NLRP13Q86W25 1043 aa30.54■■■□□ 2.48
CDX1-201ENST00000231656 TERF2IPQ9NYB0 399 aa30.54■■■□□ 2.48
CDX1-201ENST00000231656 NSD3Q9BZ95 1437 aa30.53■■■□□ 2.48
CDX1-201ENST00000231656 RGPD8O14715 1765 aaPredicted RBP30.52■■■□□ 2.48
CDX1-201ENST00000231656 CC2D1BQ5T0F9 858 aaKnown RBP30.51■■■□□ 2.48
CDX1-201ENST00000231656 SUPT16HQ9Y5B9 1047 aaKnown RBP30.51■■■□□ 2.48
CDX1-201ENST00000231656 C14orf37Q86TY3 774 aa30.51■■■□□ 2.47
CDX1-201ENST00000231656 NPC1L1Q9UHC9 1359 aa30.5■■■□□ 2.47
CDX1-201ENST00000231656 HDGFL2Q7Z4V5 671 aaPredicted RBP30.49■■■□□ 2.47
CDX1-201ENST00000231656 ITSN1Q15811 1721 aa30.49■■■□□ 2.47
CDX1-201ENST00000231656 ANKARQ7Z5J8 1434 aa30.48■■■□□ 2.47
CDX1-201ENST00000231656 ZNF335Q9H4Z2 1342 aaPredicted RBP30.48■■■□□ 2.47
CDX1-201ENST00000231656 TMEM94Q12767 1356 aa30.48■■■□□ 2.47
CDX1-201ENST00000231656 CPSF1Q10570 1443 aaKnown RBP30.46■■■□□ 2.47
CDX1-201ENST00000231656 NCOA3Q9Y6Q9 1424 aa30.46■■■□□ 2.47
CDX1-201ENST00000231656 AKAP12Q02952 1782 aa30.44■■■□□ 2.46
CDX1-201ENST00000231656 PLEKHG3A1L390 1219 aa30.44■■■□□ 2.46
CDX1-201ENST00000231656 C19orf44Q9H6X5 657 aa30.43■■■□□ 2.46
CDX1-201ENST00000231656 CGNL1Q0VF96 1302 aa30.43■■■□□ 2.46
CDX1-201ENST00000231656 XIRP1Q702N8 1843 aaKnown RBP30.42■■■□□ 2.46
CDX1-201ENST00000231656 MON2Q7Z3U7 1717 aa30.41■■■□□ 2.46
CDX1-201ENST00000231656 LRRC7Q96NW7 1537 aa30.39■■■□□ 2.46
CDX1-201ENST00000231656 ACEP12821 1306 aa30.39■■■□□ 2.46
CDX1-201ENST00000231656 ZNF692Q9BU19 519 aaPredicted RBP30.38■■■□□ 2.45
CDX1-201ENST00000231656 PMFBP1Q8TBY8 1022 aa30.36■■■□□ 2.45
CDX1-201ENST00000231656 DCCP43146 1447 aa30.35■■■□□ 2.45
CDX1-201ENST00000231656 EDC4Q6P2E9 1401 aaKnown RBP30.35■■■□□ 2.45
CDX1-201ENST00000231656 POLR3AO14802 1390 aaPredicted RBP30.35■■■□□ 2.45
CDX1-201ENST00000231656 NSD2O96028 1365 aa30.35■■■□□ 2.45
CDX1-201ENST00000231656 KIF20BQ96Q89 1820 aa30.33■■■□□ 2.45
CDX1-201ENST00000231656 INSRP06213 1382 aa30.32■■■□□ 2.44
CDX1-201ENST00000231656 MSH6P52701 1360 aa30.31■■■□□ 2.44
CDX1-201ENST00000231656 FYB1O15117 783 aa30.31■■■□□ 2.44
CDX1-201ENST00000231656 ATF3P18847 181 aa30.31■■■□□ 2.44
CDX1-201ENST00000231656 PPP2R1AP30153 589 aa30.31■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms