RNA–Protein interactions for RNA: ENSMUST00000042717.12

Trim39-201, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim39, Length 3,085 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-201ENSMUST00000042717 Rpgrip1lQ8CG73 1264 aa11.78□□□□□ -0.52
Trim39-201ENSMUST00000042717 Chd2E9PZM4 1827 aaKnown RBP11.78□□□□□ -0.52
Trim39-201ENSMUST00000042717 Zc3h13E9Q784 1729 aaKnown RBP11.77□□□□□ -0.53
Trim39-201ENSMUST00000042717 NgefQ8CHT1 710 aa11.77□□□□□ -0.53
Trim39-201ENSMUST00000042717 Kif7B7ZNG0 1348 aa11.77□□□□□ -0.53
Trim39-201ENSMUST00000042717 Gsto1O09131 240 aa11.77□□□□□ -0.53
Trim39-201ENSMUST00000042717 Q7TT23 1179 aa11.77□□□□□ -0.53
Trim39-201ENSMUST00000042717 Sbno1Q689Z5 1390 aa11.77□□□□□ -0.53
Trim39-201ENSMUST00000042717 PplQ9R269 1755 aa11.76□□□□□ -0.53
Trim39-201ENSMUST00000042717 Gm16486A0A1D5RMD1 1434 aa11.75□□□□□ -0.53
Trim39-201ENSMUST00000042717 PnisrA2AJT4 805 aaKnown RBP11.74□□□□□ -0.53
Trim39-201ENSMUST00000042717 Nlrp6Q91WS2 869 aa11.74□□□□□ -0.53
Trim39-201ENSMUST00000042717 InsrP15208 1372 aa11.74□□□□□ -0.53
Trim39-201ENSMUST00000042717 Sox12Q04890 314 aa11.74□□□□□ -0.53
Trim39-201ENSMUST00000042717 PzpQ61838 1495 aa11.74□□□□□ -0.53
Trim39-201ENSMUST00000042717 Dip2aQ8BWT5 1523 aa11.73□□□□□ -0.53
Trim39-201ENSMUST00000042717 Pip4k2bQ80XI4 416 aa11.73□□□□□ -0.53
Trim39-201ENSMUST00000042717 Eif2ak4Q9QZ05 1648 aa11.73□□□□□ -0.53
Trim39-201ENSMUST00000042717 Gemin5Q8BX17 1502 aaKnown RBP11.71□□□□□ -0.53
Trim39-201ENSMUST00000042717 Ppp2r1aQ76MZ3 589 aa11.71□□□□□ -0.53
Trim39-201ENSMUST00000042717 Tubgcp6G5E8P0 1769 aa11.71□□□□□ -0.53
Trim39-201ENSMUST00000042717 CatipB9EKE5 520 aa11.71□□□□□ -0.53
Trim39-201ENSMUST00000042717 Ift172Q6VH22 1749 aa11.71□□□□□ -0.54
Trim39-201ENSMUST00000042717 Eif5bQ05D44 1216 aaKnown RBP11.71□□□□□ -0.54
Trim39-201ENSMUST00000042717 MaddQ80U28 1577 aa11.7□□□□□ -0.54
Trim39-201ENSMUST00000042717 Topaz1E5FYH1 1653 aa11.7□□□□□ -0.54
Trim39-201ENSMUST00000042717 Q3UJC8 639 aa11.7□□□□□ -0.54
Trim39-201ENSMUST00000042717 Abca14E9Q8F8 1683 aa11.7□□□□□ -0.54
Trim39-201ENSMUST00000042717 Kdm5aQ3UXZ9 1690 aa11.7□□□□□ -0.54
Trim39-201ENSMUST00000042717 Plekhg1F6S200 1446 aa11.69□□□□□ -0.54
Trim39-201ENSMUST00000042717 Tmem94Q7TSH8 1360 aa11.68□□□□□ -0.54
Trim39-201ENSMUST00000042717 Slit3Q9WVB4 1523 aa11.68□□□□□ -0.54
Trim39-201ENSMUST00000042717 Zscan21Q07231 555 aa11.68□□□□□ -0.54
Trim39-201ENSMUST00000042717 Scaf11E9PZM7 1456 aaKnown RBP11.68□□□□□ -0.54
Trim39-201ENSMUST00000042717 Bcl9Q9D219 1425 aa11.68□□□□□ -0.54
Trim39-201ENSMUST00000042717 FanciQ8K368 1330 aa11.67□□□□□ -0.54
Trim39-201ENSMUST00000042717 Rad21Q61550 635 aaKnown RBP11.67□□□□□ -0.54
Trim39-201ENSMUST00000042717 NinlQ6ZQ12 1394 aa11.67□□□□□ -0.54
Trim39-201ENSMUST00000042717 Rab3gap2Q8BMG7 1366 aa11.67□□□□□ -0.54
Trim39-201ENSMUST00000042717 Ecm2Q5FW85 670 aa11.66□□□□□ -0.54
Trim39-201ENSMUST00000042717 Gm10563F6WIE4 79 aa11.66□□□□□ -0.54
Trim39-201ENSMUST00000042717 Map3k19E9Q3S4 1311 aa11.65□□□□□ -0.54
Trim39-201ENSMUST00000042717 Esx1O88933 382 aa11.64□□□□□ -0.55
Trim39-201ENSMUST00000042717 Anks4bQ8K3X6 423 aa11.64□□□□□ -0.55
Trim39-201ENSMUST00000042717 Birc3O08863 600 aa11.63□□□□□ -0.55
Trim39-201ENSMUST00000042717 Nwd1A6H603 1563 aa11.63□□□□□ -0.55
Trim39-201ENSMUST00000042717 Znf710Q3U288 666 aa11.63□□□□□ -0.55
Trim39-201ENSMUST00000042717 Pik3r4Q8VD65 1358 aa11.63□□□□□ -0.55
Trim39-201ENSMUST00000042717 Ofd1Q80Z25 1017 aa11.63□□□□□ -0.55
Trim39-201ENSMUST00000042717 Rims2Q9EQZ7 1530 aa11.62□□□□□ -0.55
Trim39-201ENSMUST00000042717 Kif16bB1AVY7 1312 aa11.62□□□□□ -0.55
Trim39-201ENSMUST00000042717 Cps1Q8C196 1500 aa11.62□□□□□ -0.55
Trim39-201ENSMUST00000042717 Evi5lH3BKQ3 813 aa11.61□□□□□ -0.55
Trim39-201ENSMUST00000042717 Idi2Q8BFZ6 227 aa11.61□□□□□ -0.55
Trim39-201ENSMUST00000042717 NktrP30415 1453 aa11.61□□□□□ -0.55
Trim39-201ENSMUST00000042717 Idi1P58044 227 aa11.61□□□□□ -0.55
Trim39-201ENSMUST00000042717 Tcerg1Q8CGF7 1100 aaKnown RBP11.6□□□□□ -0.55
Trim39-201ENSMUST00000042717 Cald1E9QA15 768 aaKnown RBP11.59□□□□□ -0.55
Trim39-201ENSMUST00000042717 Ap3b2Q9JME5 1082 aa11.59□□□□□ -0.55
Trim39-201ENSMUST00000042717 Pik3c2bE9QAN8 1632 aa11.59□□□□□ -0.55
Trim39-201ENSMUST00000042717 Tex14Q7M6U3 1450 aa11.59□□□□□ -0.55
Trim39-201ENSMUST00000042717 Rreb1Q3UH06 1700 aaKnown RBP11.59□□□□□ -0.55
Trim39-201ENSMUST00000042717 Usp32F8VPZ3 1604 aa11.59□□□□□ -0.55
Trim39-201ENSMUST00000042717 Gprasp1Q5U4C1 1347 aa11.59□□□□□ -0.55
Trim39-201ENSMUST00000042717 Rimbp3Q3V0F0 1606 aa11.58□□□□□ -0.55
Trim39-201ENSMUST00000042717 Mak16Q8BGS0 296 aaKnown RBP11.58□□□□□ -0.55
Trim39-201ENSMUST00000042717 CrbnQ8C7D2 445 aa11.58□□□□□ -0.55
Trim39-201ENSMUST00000042717 Cyb5rlB1AS42 316 aa11.57□□□□□ -0.56
Trim39-201ENSMUST00000042717 P2rx7Q9Z1M0 595 aa11.57□□□□□ -0.56
Trim39-201ENSMUST00000042717 Tns3Q5SSZ5 1440 aa11.57□□□□□ -0.56
Trim39-201ENSMUST00000042717 Nrxn1Q9CS84 1514 aa11.56□□□□□ -0.56
Trim39-201ENSMUST00000042717 U2af1Q9D883 239 aaKnown RBP11.56□□□□□ -0.56
Trim39-201ENSMUST00000042717 Neurod2Q62414 383 aa11.56□□□□□ -0.56
Trim39-201ENSMUST00000042717 Slain2Q8CI08 581 aa11.56□□□□□ -0.56
Trim39-201ENSMUST00000042717 Rapgef3Q8VCC8 918 aa11.56□□□□□ -0.56
Trim39-201ENSMUST00000042717 GsdmaQ9EST1 446 aa11.56□□□□□ -0.56
Trim39-201ENSMUST00000042717 CenpbP27790 599 aa11.55□□□□□ -0.56
Trim39-201ENSMUST00000042717 Tsen2Q6P7W5 460 aa11.55□□□□□ -0.56
Trim39-201ENSMUST00000042717 Brwd3A2AHJ4 1799 aa11.55□□□□□ -0.56
Trim39-201ENSMUST00000042717 Scn4aQ9ER60 1841 aa11.55□□□□□ -0.56
Trim39-201ENSMUST00000042717 Adgrl1Q80TR1 1466 aa11.54□□□□□ -0.56
Trim39-201ENSMUST00000042717 Golga2Q921M4 999 aa11.54□□□□□ -0.56
Trim39-201ENSMUST00000042717 Arap3Q8R5G7 1538 aa11.54□□□□□ -0.56
Trim39-201ENSMUST00000042717 Med1Q925J9 1575 aa11.54□□□□□ -0.56
Trim39-201ENSMUST00000042717 IbtkQ6ZPR6 1352 aaKnown RBP11.53□□□□□ -0.56
Trim39-201ENSMUST00000042717 PtpruB1AUH1 1446 aa11.53□□□□□ -0.56
Trim39-201ENSMUST00000042717 Gm21190A0A0G2JGJ6 266 aa11.52□□□□□ -0.56
Trim39-201ENSMUST00000042717 Zfp444Q3TDV8 331 aaKnown RBP11.52□□□□□ -0.56
Trim39-201ENSMUST00000042717 Plin1Q8CGN5 517 aa11.52□□□□□ -0.56
Trim39-201ENSMUST00000042717 Slc35g1Q8BY79 368 aa11.52□□□□□ -0.57
Trim39-201ENSMUST00000042717 Kiaa1107Q80TK0 1369 aa11.52□□□□□ -0.57
Trim39-201ENSMUST00000042717 Kif20bQ80WE4 1774 aaKnown RBP11.51□□□□□ -0.57
Trim39-201ENSMUST00000042717 Apaf1O88879 1249 aa11.51□□□□□ -0.57
Trim39-201ENSMUST00000042717 Cabp4Q8VHC5 271 aa11.51□□□□□ -0.57
Trim39-201ENSMUST00000042717 Sirt1Q923E4 737 aa11.51□□□□□ -0.57
Trim39-201ENSMUST00000042717 Speer4f1Q9D5Q6 258 aa11.51□□□□□ -0.57
Trim39-201ENSMUST00000042717 Nrxn3Q6P9K9 1571 aa11.51□□□□□ -0.57
Trim39-201ENSMUST00000042717 GnpatP98192 678 aa11.51□□□□□ -0.57
Trim39-201ENSMUST00000042717 Tnnt3Q9QZ47 272 aa11.51□□□□□ -0.57
Trim39-201ENSMUST00000042717 Tnrc6bQ8BKI2 1810 aaKnown RBP11.5□□□□□ -0.57
Retrieved 100 of 22,080 RNA–protein pairs in 16.3 ms