RNA–Protein interactions for RNA: ENSMUST00000028728.5

Ubr1-201, Transcript of E3 ubiquitin-protein ligase UBR1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ubr1, Length 7,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr1-201ENSMUST00000028728 Map3k1P53349 1493 aa12.2□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Tceal9Q9DD24 104 aa12.2□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Polr1aO35134 1717 aaKnown RBP12.2□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Tubb6Q922F4 447 aa12.2□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Smarca4Q3TKT4 1613 aaKnown RBP12.2□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Gm21969J3QJZ1 289 aa12.19□□□□□ -0.46
Ubr1-201ENSMUST00000028728 SrrtQ99MR6 875 aaKnown RBP12.19□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Shroom4Q1W617 1475 aa12.19□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Arhgef5E9Q7D5 1581 aa12.19□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Tnnt1O88346 262 aa12.19□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Tmco3Q8BH01 678 aa12.19□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Dnaaf4Q8R368 420 aa12.19□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Znf771Q8BJ90 317 aa12.19□□□□□ -0.46
Ubr1-201ENSMUST00000028728 ImpactO55091 318 aa12.19□□□□□ -0.46
Ubr1-201ENSMUST00000028728 L3mbtl2P59178 703 aa12.19□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Pibf1E9Q6K3 756 aa12.18□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Mad1l1Q9WTX8 717 aaKnown RBP12.18□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Med4Q9CQA5 270 aa12.18□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Plppr3Q7TPB0 716 aa12.17□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Kif18aQ91WD7 886 aa12.17□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Cavin1O54724 392 aa12.17□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Cplx1P63040 134 aa12.17□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Gps2Q921N8 327 aa12.17□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Arap1Q4LDD4 1452 aa12.17□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Trim55G3X8Y1 545 aa12.17□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Otud6bQ8K2H2 294 aa12.17□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Cavin4A2AMM0 362 aa12.16□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Atad2bE9Q166 1460 aaKnown RBP12.16□□□□□ -0.46
Ubr1-201ENSMUST00000028728 ScaperF8VQ70 1398 aaKnown RBP12.16□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Kcnh8P59111 1102 aa12.16□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Fez2Q6TYB5 348 aa12.16□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Cfap99A0A140LIX9 648 aa12.16□□□□□ -0.46
Ubr1-201ENSMUST00000028728 CastP51125 788 aa12.16□□□□□ -0.46
Ubr1-201ENSMUST00000028728 WrnO09053 1401 aa12.16□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Dctn1O08788 1281 aa12.15□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Usp16Q99LG0 825 aa12.15□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Chmp3Q9CQ10 224 aa12.15□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Ncoa2Q61026 1462 aa12.15□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Wwc1Q5SXA9 1104 aa12.15□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Nat10Q8K224 1024 aaKnown RBP12.15□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Utp14aQ640M1 767 aaKnown RBP12.15□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Wdr78E9PYY5 807 aa12.15□□□□□ -0.46
Ubr1-201ENSMUST00000028728 Smc4Q8CG47 1286 aa12.15□□□□□ -0.46
Ubr1-201ENSMUST00000028728 NexnQ7TPW1 607 aa12.14□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Cc2d2bA0A286YDU8 1405 aa12.14□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Tiam1Q60610 1591 aa12.14□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Kank1E9Q238 1360 aa12.14□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Hmox1P14901 289 aa12.14□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Cog6Q8R3I3 657 aa12.14□□□□□ -0.47
Ubr1-201ENSMUST00000028728 ErbinQ80TH2 1402 aa12.13□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Liat1Q810M6 228 aa12.13□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Spag5Q7TME2 1165 aa12.13□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Usp48Q3V0C5 1052 aa12.12□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Pmfbp1Q9WVQ0 1022 aa12.12□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Necab1Q8BG18 352 aa12.12□□□□□ -0.47
Ubr1-201ENSMUST00000028728 AknaQ80VW7 1404 aa12.12□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Arglu1Q3UL36 271 aaKnown RBP12.12□□□□□ -0.47
Ubr1-201ENSMUST00000028728 NrkQ9R0G8 1455 aa12.12□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Hnrnpul1Q8VDM6 859 aaKnown RBP12.12□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Trap1aP19473 224 aa12.11□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Cc2d1aQ8K1A6 943 aa12.11□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Ccdc83Q9D4V3 305 aa12.11□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Phldb1Q6PDH0 1371 aaKnown RBP12.11□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Q9D9S1 216 aa12.11□□□□□ -0.47
Ubr1-201ENSMUST00000028728 TnmdQ9EP64 317 aa12.11□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Samd1D3YXK1 519 aa12.11□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Hvcn1Q3U2S8 269 aa12.11□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Senp3Q9EP97 568 aaKnown RBP12.11□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Fmnl2A2APV2 1086 aa12.1□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Prdm16A2A935 1275 aa12.1□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Mical1Q8VDP3 1048 aa12.1□□□□□ -0.47
Ubr1-201ENSMUST00000028728 ScribQ80U72 1612 aa12.1□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Tdrd9Q14BI7 1383 aa12.1□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Psme1P97371 249 aa12.1□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Cep112Q5PR68 954 aa12.1□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Nol12Q8BG17 217 aa12.1□□□□□ -0.47
Ubr1-201ENSMUST00000028728 TimelessQ9R1X4 1197 aa12.1□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Ncoa1P70365 1447 aa12.1□□□□□ -0.47
Ubr1-201ENSMUST00000028728 OptnQ8K3K8 584 aa12.1□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Rcan3Q9JKK0 239 aa12.09□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Jakmip2D3YXK0 820 aa12.09□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Map9Q3TRR0 646 aa12.09□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Phldb2Q8K1N2 1249 aa12.09□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Ccdc102aQ3TMW1 549 aa12.09□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Gm45140A0A0N4SUM8 220 aa12.09□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Hap1O35668 628 aa12.09□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Krt85Q9Z2T6 507 aa12.09□□□□□ -0.47
Ubr1-201ENSMUST00000028728 NinlQ6ZQ12 1394 aa12.08□□□□□ -0.47
Ubr1-201ENSMUST00000028728 Camsap2Q8C1B1 1461 aa12.08□□□□□ -0.48
Ubr1-201ENSMUST00000028728 Tex2Q6ZPJ0 1128 aaKnown RBP12.08□□□□□ -0.48
Ubr1-201ENSMUST00000028728 Ppip5k2Q6ZQB6 1129 aa12.08□□□□□ -0.48
Ubr1-201ENSMUST00000028728 Syce3B5KM66 88 aa12.08□□□□□ -0.48
Ubr1-201ENSMUST00000028728 Znf692Q3U381 531 aa12.08□□□□□ -0.48
Ubr1-201ENSMUST00000028728 FanciQ8K368 1330 aa12.08□□□□□ -0.48
Ubr1-201ENSMUST00000028728 Bag1Q60739 355 aa12.08□□□□□ -0.48
Ubr1-201ENSMUST00000028728 Sv2bQ8BG39 683 aa12.08□□□□□ -0.48
Ubr1-201ENSMUST00000028728 Nup88Q8CEC0 753 aaKnown RBP12.07□□□□□ -0.48
Ubr1-201ENSMUST00000028728 Nectin2P32507 530 aa12.07□□□□□ -0.48
Ubr1-201ENSMUST00000028728 Smc2Q8CG48 1191 aaKnown RBP12.07□□□□□ -0.48
Ubr1-201ENSMUST00000028728 Il16O54824 1322 aa12.06□□□□□ -0.48
Retrieved 100 of 22,080 RNA–protein pairs in 15.1 ms