Protein–RNA interactions for Protein: A0A140LIX9

Cfap99, Cilia and flagella-associated protein 99, mousemouse

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cfap99A0A140LIX9 Gm25239-201ENSMUST00000174915 86 ntBASIC45.7■■■■■ 4.91
Cfap99A0A140LIX9 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC42.39■■■■■ 4.38
Cfap99A0A140LIX9 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC41.84■■■■■ 4.29
Cfap99A0A140LIX9 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC39.77■■■■□ 3.96
Cfap99A0A140LIX9 Gm24109-201ENSMUST00000175489 103 ntBASIC39.72■■■■□ 3.95
Cfap99A0A140LIX9 Gm15042-201ENSMUST00000120212 883 ntBASIC39.66■■■■□ 3.94
Cfap99A0A140LIX9 Gm15045-201ENSMUST00000117359 883 ntBASIC38.68■■■■□ 3.78
Cfap99A0A140LIX9 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC38.65■■■■□ 3.78
Cfap99A0A140LIX9 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC38.63■■■■□ 3.77
Cfap99A0A140LIX9 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC38.62■■■■□ 3.77
Cfap99A0A140LIX9 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC38.6■■■■□ 3.77
Cfap99A0A140LIX9 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC38.43■■■■□ 3.74
Cfap99A0A140LIX9 Gm23366-201ENSMUST00000175022 89 ntBASIC38.17■■■■□ 3.7
Cfap99A0A140LIX9 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC37.95■■■■□ 3.67
Cfap99A0A140LIX9 AC153911.1-202ENSMUST00000218534 1034 ntBASIC37.17■■■■□ 3.54
Cfap99A0A140LIX9 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC37.06■■■■□ 3.52
Cfap99A0A140LIX9 Psd-208ENSMUST00000224556 2034 ntBASIC37■■■■□ 3.51
Cfap99A0A140LIX9 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC36.91■■■■□ 3.5
Cfap99A0A140LIX9 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC36.83■■■■□ 3.49
Cfap99A0A140LIX9 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC36.81■■■■□ 3.48
Cfap99A0A140LIX9 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC36.73■■■■□ 3.47
Cfap99A0A140LIX9 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC36.69■■■■□ 3.46
Cfap99A0A140LIX9 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC36.44■■■■□ 3.42
Cfap99A0A140LIX9 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC36.32■■■■□ 3.4
Cfap99A0A140LIX9 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC36.32■■■■□ 3.4
Cfap99A0A140LIX9 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC36.26■■■■□ 3.4
Cfap99A0A140LIX9 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC36.25■■■■□ 3.39
Cfap99A0A140LIX9 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC36.18■■■■□ 3.38
Cfap99A0A140LIX9 Gm25238-201ENSMUST00000174914 89 ntBASIC36.16■■■■□ 3.38
Cfap99A0A140LIX9 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC36.13■■■■□ 3.37
Cfap99A0A140LIX9 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC36.07■■■■□ 3.36
Cfap99A0A140LIX9 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC35.92■■■■□ 3.34
Cfap99A0A140LIX9 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC35.75■■■■□ 3.31
Cfap99A0A140LIX9 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC35.67■■■■□ 3.3
Cfap99A0A140LIX9 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC35.6■■■■□ 3.29
Cfap99A0A140LIX9 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC35.57■■■■□ 3.28
Cfap99A0A140LIX9 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC35.53■■■■□ 3.28
Cfap99A0A140LIX9 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC35.49■■■■□ 3.27
Cfap99A0A140LIX9 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC35.46■■■■□ 3.27
Cfap99A0A140LIX9 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC35.43■■■■□ 3.26
Cfap99A0A140LIX9 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC35.42■■■■□ 3.26
Cfap99A0A140LIX9 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC35.29■■■■□ 3.24
Cfap99A0A140LIX9 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC35.27■■■■□ 3.24
Cfap99A0A140LIX9 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC35.23■■■■□ 3.23
Cfap99A0A140LIX9 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC35.14■■■■□ 3.22
Cfap99A0A140LIX9 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC35.11■■■■□ 3.21
Cfap99A0A140LIX9 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC35.05■■■■□ 3.2
Cfap99A0A140LIX9 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC35.05■■■■□ 3.2
Cfap99A0A140LIX9 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC34.87■■■■□ 3.17
Cfap99A0A140LIX9 Gm25262-201ENSMUST00000174934 133 ntBASIC34.85■■■■□ 3.17
Cfap99A0A140LIX9 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC34.85■■■■□ 3.17
Cfap99A0A140LIX9 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC34.77■■■■□ 3.16
Cfap99A0A140LIX9 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC34.76■■■■□ 3.16
Cfap99A0A140LIX9 Gm27325-201ENSMUST00000175467 74 ntBASIC34.7■■■■□ 3.15
Cfap99A0A140LIX9 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
Cfap99A0A140LIX9 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC34.43■■■■□ 3.1
Cfap99A0A140LIX9 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC34.39■■■■□ 3.1
Cfap99A0A140LIX9 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC34.37■■■■□ 3.09
Cfap99A0A140LIX9 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC34.35■■■■□ 3.09
Cfap99A0A140LIX9 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC34.34■■■■□ 3.09
Cfap99A0A140LIX9 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC34.33■■■■□ 3.09
Cfap99A0A140LIX9 Rab21-202ENSMUST00000218831 843 ntBASIC34.29■■■■□ 3.08
Cfap99A0A140LIX9 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC34.23■■■■□ 3.07
Cfap99A0A140LIX9 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC34.22■■■■□ 3.07
Cfap99A0A140LIX9 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC34.18■■■■□ 3.06
Cfap99A0A140LIX9 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC34.18■■■■□ 3.06
Cfap99A0A140LIX9 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC34.16■■■■□ 3.06
Cfap99A0A140LIX9 Gm26115-201ENSMUST00000175605 87 ntBASIC34.11■■■■□ 3.05
Cfap99A0A140LIX9 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC34.07■■■■□ 3.05
Cfap99A0A140LIX9 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC34.06■■■■□ 3.04
Cfap99A0A140LIX9 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC34.03■■■■□ 3.04
Cfap99A0A140LIX9 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC33.99■■■■□ 3.03
Cfap99A0A140LIX9 Gm10524-201ENSMUST00000181931 1893 ntBASIC33.95■■■■□ 3.02
Cfap99A0A140LIX9 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC33.9■■■■□ 3.02
Cfap99A0A140LIX9 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC33.89■■■■□ 3.02
Cfap99A0A140LIX9 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC33.89■■■■□ 3.02
Cfap99A0A140LIX9 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC33.88■■■■□ 3.01
Cfap99A0A140LIX9 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC33.86■■■■□ 3.01
Cfap99A0A140LIX9 Gm8109-201ENSMUST00000194076 746 ntBASIC33.83■■■■□ 3.01
Cfap99A0A140LIX9 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC33.82■■■■□ 3
Cfap99A0A140LIX9 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC33.82■■■■□ 3
Cfap99A0A140LIX9 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC33.81■■■■□ 3
Cfap99A0A140LIX9 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC33.8■■■■□ 3
Cfap99A0A140LIX9 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC33.79■■■■□ 3
Cfap99A0A140LIX9 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC33.73■■■□□ 2.99
Cfap99A0A140LIX9 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC33.66■■■□□ 2.98
Cfap99A0A140LIX9 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC33.58■■■□□ 2.97
Cfap99A0A140LIX9 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC33.57■■■□□ 2.96
Cfap99A0A140LIX9 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC33.56■■■□□ 2.96
Cfap99A0A140LIX9 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC33.53■■■□□ 2.96
Cfap99A0A140LIX9 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC33.53■■■□□ 2.96
Cfap99A0A140LIX9 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC33.45■■■□□ 2.94
Cfap99A0A140LIX9 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC33.44■■■□□ 2.94
Cfap99A0A140LIX9 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.94
Cfap99A0A140LIX9 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC33.33■■■□□ 2.93
Cfap99A0A140LIX9 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC33.33■■■□□ 2.93
Cfap99A0A140LIX9 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC33.32■■■□□ 2.92
Cfap99A0A140LIX9 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC33.22■■■□□ 2.91
Cfap99A0A140LIX9 CT025624.2-201ENSMUST00000223609 1909 ntBASIC33.18■■■□□ 2.9
Cfap99A0A140LIX9 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
Retrieved 100 of 76,532 protein–RNA pairs in 54 ms