RNA–Protein interactions for RNA: ENSMUST00000028728.5

Ubr1-201, Transcript of E3 ubiquitin-protein ligase UBR1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ubr1, Length 7,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr1-201ENSMUST00000028728 Rhox8Q6VSS7 320 aa17.36■□□□□ 0.37
Ubr1-201ENSMUST00000028728 Rpgrip1Q9EPQ2 1331 aa17.19■□□□□ 0.34
Ubr1-201ENSMUST00000028728 Las1lA2BE28 776 aaKnown RBP16.4■□□□□ 0.22
Ubr1-201ENSMUST00000028728 Cngb1E1AZ71 1325 aa16.24■□□□□ 0.19
Ubr1-201ENSMUST00000028728 Ehmt2Q9Z148 1263 aaKnown RBP15.85■□□□□ 0.13
Ubr1-201ENSMUST00000028728 Pelp1Q9DBD5 1123 aaKnown RBP15.8■□□□□ 0.12
Ubr1-201ENSMUST00000028728 Acin1Q9JIX8 1338 aaKnown RBP15.7■□□□□ 0.1
Ubr1-201ENSMUST00000028728 Wdr66E9Q743 1299 aa15.59■□□□□ 0.09
Ubr1-201ENSMUST00000028728 CenpbP27790 599 aa15.54■□□□□ 0.08
Ubr1-201ENSMUST00000028728 Zeb1Q64318 1117 aa15.5■□□□□ 0.07
Ubr1-201ENSMUST00000028728 Myt1Q8CFC2 1127 aa15.49■□□□□ 0.07
Ubr1-201ENSMUST00000028728 NefmP08553 848 aa15.4■□□□□ 0.06
Ubr1-201ENSMUST00000028728 Ccdc136Q3TVA9 1136 aa15.37■□□□□ 0.05
Ubr1-201ENSMUST00000028728 Trim41Q5NCC3 630 aa15.31■□□□□ 0.04
Ubr1-201ENSMUST00000028728 NischQ80TM9 1593 aa15.3■□□□□ 0.04
Ubr1-201ENSMUST00000028728 Ccdc180J3QNE4 1664 aa15.29■□□□□ 0.04
Ubr1-201ENSMUST00000028728 Pcgf6Q99NA9 353 aa15.21■□□□□ 0.03
Ubr1-201ENSMUST00000028728 HrcG5E8J6 738 aa15.17■□□□□ 0.02
Ubr1-201ENSMUST00000028728 Stra8P70278 393 aa15.16■□□□□ 0.02
Ubr1-201ENSMUST00000028728 Rtl1Q7M732 1744 aa15.14■□□□□ 0.01
Ubr1-201ENSMUST00000028728 Gab3Q8BSM5 595 aa15.11■□□□□ 0.01
Ubr1-201ENSMUST00000028728 Esf1Q3V1V3 845 aaKnown RBP15.09■□□□□ 0.01
Ubr1-201ENSMUST00000028728 Cdk11bP24788 784 aaKnown RBP15.02■□□□□ -0
Ubr1-201ENSMUST00000028728 Amer1Q7TS75 1132 aa14.96□□□□□ -0.01
Ubr1-201ENSMUST00000028728 Tnnt3Q9QZ47 272 aa14.93□□□□□ -0.02
Ubr1-201ENSMUST00000028728 Ube2uB1AUC4 352 aa14.93□□□□□ -0.02
Ubr1-201ENSMUST00000028728 Npm2Q80W85 207 aa14.89□□□□□ -0.03
Ubr1-201ENSMUST00000028728 Nop58Q6DFW4 536 aaKnown RBP14.81□□□□□ -0.04
Ubr1-201ENSMUST00000028728 Rtl5Q5DTT4 599 aa14.79□□□□□ -0.04
Ubr1-201ENSMUST00000028728 Myt1lP97500 1187 aa14.78□□□□□ -0.04
Ubr1-201ENSMUST00000028728 UbtfP25976 765 aaKnown RBP14.78□□□□□ -0.04
Ubr1-201ENSMUST00000028728 Supt5hO55201 1082 aaKnown RBP14.75□□□□□ -0.05
Ubr1-201ENSMUST00000028728 DiexfQ8BTT6 772 aaKnown RBP14.6□□□□□ -0.07
Ubr1-201ENSMUST00000028728 Slc24a1Q91WD8 1130 aa14.53□□□□□ -0.08
Ubr1-201ENSMUST00000028728 4933416C03RikQ3V063 378 aa14.51□□□□□ -0.09
Ubr1-201ENSMUST00000028728 4930567H17RikQ3V0K5 233 aa14.51□□□□□ -0.09
Ubr1-201ENSMUST00000028728 Ttbk1Q6PCN3 1308 aa14.47□□□□□ -0.09
Ubr1-201ENSMUST00000028728 TonslQ6NZL6 1363 aa14.47□□□□□ -0.09
Ubr1-201ENSMUST00000028728 NrdcQ8BHG1 1161 aa14.47□□□□□ -0.09
Ubr1-201ENSMUST00000028728 Anks4bQ8K3X6 423 aa14.43□□□□□ -0.1
Ubr1-201ENSMUST00000028728 ClspnQ80YR7 1315 aa14.43□□□□□ -0.1
Ubr1-201ENSMUST00000028728 Neurod1Q60867 357 aa14.41□□□□□ -0.1
Ubr1-201ENSMUST00000028728 Anp32aO35381 247 aa14.4□□□□□ -0.1
Ubr1-201ENSMUST00000028728 Anp32bQ9EST5 272 aaKnown RBP14.4□□□□□ -0.1
Ubr1-201ENSMUST00000028728 NeflP08551 543 aa14.39□□□□□ -0.11
Ubr1-201ENSMUST00000028728 Aplp2Q06335 707 aa14.39□□□□□ -0.11
Ubr1-201ENSMUST00000028728 Dcaf1Q80TR8 1506 aa14.39□□□□□ -0.11
Ubr1-201ENSMUST00000028728 Mier1Q5UAK0 511 aa14.38□□□□□ -0.11
Ubr1-201ENSMUST00000028728 NclP09405 707 aaKnown RBP14.37□□□□□ -0.11
Ubr1-201ENSMUST00000028728 Abcc9P70170 1546 aa14.34□□□□□ -0.11
Ubr1-201ENSMUST00000028728 Eif5bQ05D44 1216 aaKnown RBP14.22□□□□□ -0.13
Ubr1-201ENSMUST00000028728 Ppargc1bQ8VHJ7 1014 aa14.2□□□□□ -0.14
Ubr1-201ENSMUST00000028728 Fam50aQ9WV03 339 aaKnown RBP14.19□□□□□ -0.14
Ubr1-201ENSMUST00000028728 Csrnp3P59055 597 aa14.17□□□□□ -0.14
Ubr1-201ENSMUST00000028728 Sall2Q9QX96 1004 aa14.17□□□□□ -0.14
Ubr1-201ENSMUST00000028728 Zcchc6Q5BLK4 1491 aaKnown RBP14.15□□□□□ -0.14
Ubr1-201ENSMUST00000028728 Ccdc9Q8VC31 543 aaKnown RBP14.09□□□□□ -0.15
Ubr1-201ENSMUST00000028728 Cep164Q5DU05 1446 aa14.05□□□□□ -0.16
Ubr1-201ENSMUST00000028728 DaxxO35613 739 aa14.04□□□□□ -0.16
Ubr1-201ENSMUST00000028728 Ap3b1Q9Z1T1 1105 aa13.98□□□□□ -0.17
Ubr1-201ENSMUST00000028728 Il27Q8K3I6 234 aa13.97□□□□□ -0.17
Ubr1-201ENSMUST00000028728 1700123L14RikQ3V2K7 440 aa13.96□□□□□ -0.17
Ubr1-201ENSMUST00000028728 Calr4Q3TQS0 420 aa13.92□□□□□ -0.18
Ubr1-201ENSMUST00000028728 Gm38655A0A286YDK6 273 aa13.9□□□□□ -0.18
Ubr1-201ENSMUST00000028728 Abcc8B2RUS7 1588 aa13.88□□□□□ -0.19
Ubr1-201ENSMUST00000028728 Ccer2J3QPU5 274 aa13.88□□□□□ -0.19
Ubr1-201ENSMUST00000028728 Plekhg3Q4VAC9 1341 aa13.83□□□□□ -0.19
Ubr1-201ENSMUST00000028728 Wdr43Q6ZQL4 677 aaKnown RBP13.82□□□□□ -0.2
Ubr1-201ENSMUST00000028728 Upf2A2AT37 1269 aaKnown RBP13.81□□□□□ -0.2
Ubr1-201ENSMUST00000028728 Ppp4r2Q0VGB7 417 aa13.79□□□□□ -0.2
Ubr1-201ENSMUST00000028728 Hsp90aa1P07901 733 aaKnown RBP13.78□□□□□ -0.2
Ubr1-201ENSMUST00000028728 Os9Q8K2C7 672 aa13.76□□□□□ -0.21
Ubr1-201ENSMUST00000028728 Clip1Q922J3 1391 aa13.75□□□□□ -0.21
Ubr1-201ENSMUST00000028728 Brd4Q9ESU6 1400 aaKnown RBP13.75□□□□□ -0.21
Ubr1-201ENSMUST00000028728 Fam71e1A1L3C1 212 aa13.71□□□□□ -0.21
Ubr1-201ENSMUST00000028728 Eid3Q3V124 375 aa13.71□□□□□ -0.21
Ubr1-201ENSMUST00000028728 Bcl11aQ9QYE3 773 aa13.68□□□□□ -0.22
Ubr1-201ENSMUST00000028728 Mapk8ip2Q9ERE9 830 aa13.66□□□□□ -0.22
Ubr1-201ENSMUST00000028728 Ccdc27Q3V036 639 aa13.66□□□□□ -0.22
Ubr1-201ENSMUST00000028728 Lmod2Q3UHZ5 550 aa13.65□□□□□ -0.23
Ubr1-201ENSMUST00000028728 Chic1Q8CBW7 227 aa13.65□□□□□ -0.23
Ubr1-201ENSMUST00000028728 Hdac5Q9Z2V6 1113 aa13.63□□□□□ -0.23
Ubr1-201ENSMUST00000028728 Ythdc1E9Q5K9 736 aaKnown RBP13.59□□□□□ -0.23
Ubr1-201ENSMUST00000028728 Mrs2Q5NCE8 434 aa13.59□□□□□ -0.23
Ubr1-201ENSMUST00000028728 Aebp2Q9Z248 504 aaKnown RBP13.57□□□□□ -0.24
Ubr1-201ENSMUST00000028728 Nlrp6Q91WS2 869 aa13.56□□□□□ -0.24
Ubr1-201ENSMUST00000028728 Npm1Q61937 292 aaKnown RBP13.49□□□□□ -0.25
Ubr1-201ENSMUST00000028728 Irx3P81067 507 aa13.49□□□□□ -0.25
Ubr1-201ENSMUST00000028728 CanxP35564 591 aaKnown RBP13.48□□□□□ -0.25
Ubr1-201ENSMUST00000028728 Rb1cc1Q9ESK9 1588 aa13.47□□□□□ -0.25
Ubr1-201ENSMUST00000028728 Trim44Q9QXA7 346 aa13.46□□□□□ -0.25
Ubr1-201ENSMUST00000028728 Htatsf1Q8BGC0 757 aa13.46□□□□□ -0.26
Ubr1-201ENSMUST00000028728 Gm35339A0A140LHH9 1649 aa13.44□□□□□ -0.26
Ubr1-201ENSMUST00000028728 ArxO35085 564 aa13.42□□□□□ -0.26
Ubr1-201ENSMUST00000028728 Ppm1gQ61074 542 aa13.41□□□□□ -0.26
Ubr1-201ENSMUST00000028728 Hnrnpul2Q00PI9 745 aaKnown RBP13.4□□□□□ -0.26
Ubr1-201ENSMUST00000028728 Polr3glQ8R0C0 218 aa13.39□□□□□ -0.27
Ubr1-201ENSMUST00000028728 BlmO88700 1416 aa13.38□□□□□ -0.27
Ubr1-201ENSMUST00000028728 Ofd1Q80Z25 1017 aa13.37□□□□□ -0.27
Ubr1-201ENSMUST00000028728 Hsp90ab1P11499 724 aaKnown RBP13.36□□□□□ -0.27
Retrieved 100 of 22,080 RNA–protein pairs in 622.6 ms