RNA–Protein interactions for RNA: YPL065W

VPS28, Transcript of Component of the ESCRT-I complex, yeastyeast

Gene VPS28, Length 729 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS28YPL065W MMS1Q06211 1407 aa-0.57□□□□□ -2.5
VPS28YPL065W SPO14P36126 1683 aa-0.58□□□□□ -2.5
VPS28YPL065W YOR105WQ08504 108 aa-0.58□□□□□ -2.5
VPS28YPL065W YMR001C-AQ8TGS9 76 aa-0.58□□□□□ -2.5
VPS28YPL065W TY2B-LR1P0C2J3 1770 aa-0.59□□□□□ -2.5
VPS28YPL065W TY2B-FP0CX63 1770 aa-0.59□□□□□ -2.5
VPS28YPL065W TY2B-GR2P0CX64 1770 aa-0.59□□□□□ -2.5
VPS28YPL065W TY2B-CP25384 1770 aa-0.59□□□□□ -2.5
VPS28YPL065W TY2B-DR2Q03494 1770 aa-0.59□□□□□ -2.5
VPS28YPL065W TY2B-DR3Q07791 1770 aaKnown RBP-0.59□□□□□ -2.5
VPS28YPL065W TY2B-OR1Q12113 1770 aa-0.59□□□□□ -2.5
VPS28YPL065W TY2B-DR1Q12472 1770 aa-0.59□□□□□ -2.5
VPS28YPL065W TY2B-BQ12491 1770 aa-0.59□□□□□ -2.5
VPS28YPL065W TY2B-OR2Q12501 1770 aa-0.59□□□□□ -2.5
VPS28YPL065W TRA1P38811 3744 aa-0.59□□□□□ -2.5
VPS28YPL065W NUM1Q00402 2748 aa-0.6□□□□□ -2.51
VPS28YPL065W YSP2Q06681 1438 aa-0.6□□□□□ -2.51
VPS28YPL065W TY1B-NL2Q99337 1749 aaKnown RBP-0.61□□□□□ -2.51
VPS28YPL065W YDL022C-AP0C5L6 82 aa-0.64□□□□□ -2.51
VPS28YPL065W IRA1P18963 3092 aa-0.64□□□□□ -2.51
VPS28YPL065W VTH1P40438 1549 aa-0.64□□□□□ -2.51
VPS28YPL065W VTH2P40890 1549 aa-0.64□□□□□ -2.51
VPS28YPL065W LTE1P07866 1435 aa-0.64□□□□□ -2.51
VPS28YPL065W CSF1Q12150 2958 aa-0.65□□□□□ -2.51
VPS28YPL065W YPR145C-AQ2V2P0 78 aa-0.65□□□□□ -2.51
VPS28YPL065W YDR182W-AQ3E796 67 aa-0.65□□□□□ -2.51
VPS28YPL065W CUP1-1P0CX80 61 aa-0.67□□□□□ -2.52
VPS28YPL065W CUP1-2P0CX81 61 aa-0.67□□□□□ -2.52
VPS28YPL065W CWP2P43497 92 aa-0.67□□□□□ -2.52
VPS28YPL065W YKL065W-AQ2V2P2 73 aa-0.67□□□□□ -2.52
VPS28YPL065W YOR008C-AQ3E7B9 74 aa-0.67□□□□□ -2.52
VPS28YPL065W IRA2P19158 3079 aa-0.68□□□□□ -2.52
VPS28YPL065W POC4Q12245 148 aaPredicted RBP-0.68□□□□□ -2.52
VPS28YPL065W YKL018C-AQ3E7A7 99 aa-0.68□□□□□ -2.52
VPS28YPL065W TOS6P48560 102 aa-0.69□□□□□ -2.52
VPS28YPL065W YOR314WQ12506 109 aa-0.69□□□□□ -2.52
VPS28YPL065W ESC1Q03661 1658 aaKnown RBP-0.71□□□□□ -2.52
VPS28YPL065W SIP18P50263 79 aa-0.71□□□□□ -2.52
VPS28YPL065W FIG2P25653 1609 aa-0.71□□□□□ -2.52
VPS28YPL065W YLL006W-AQ3E814 58 aa-0.72□□□□□ -2.52
VPS28YPL065W YOR072W-BQ3E832 53 aa-0.72□□□□□ -2.52
VPS28YPL065W IRC20Q06554 1556 aa-0.73□□□□□ -2.53
VPS28YPL065W YDR524C-BQ3E6R4 66 aa-0.73□□□□□ -2.53
VPS28YPL065W APC1P53886 1748 aa-0.73□□□□□ -2.53
VPS28YPL065W FKS3Q04952 1785 aa-0.74□□□□□ -2.53
VPS28YPL065W RPS27AP35997 82 aaKnown RBP-0.74□□□□□ -2.53
VPS28YPL065W YDR119W-AQ2V2P9 66 aa-0.74□□□□□ -2.53
VPS28YPL065W YGL258W-AQ3E740 77 aa-0.74□□□□□ -2.53
VPS28YPL065W TY3B-GQ99315 1547 aa-0.74□□□□□ -2.53
VPS28YPL065W COA2Q3E823 68 aa-0.75□□□□□ -2.53
VPS28YPL065W Q0017Q9ZZX8 53 aa-0.75□□□□□ -2.53
VPS28YPL065W VPS15P22219 1454 aa-0.75□□□□□ -2.53
VPS28YPL065W VPS13Q07878 3144 aa-0.76□□□□□ -2.53
VPS28YPL065W OLI1P61829 76 aa-0.76□□□□□ -2.53
VPS28YPL065W SMC4Q12267 1418 aa-0.76□□□□□ -2.53
VPS28YPL065W SIN3P22579 1536 aa-0.76□□□□□ -2.53
VPS28YPL065W KOG1P38873 1557 aa-0.77□□□□□ -2.53
VPS28YPL065W THO2P53552 1597 aaKnown RBP-0.78□□□□□ -2.53
VPS28YPL065W ATP17Q06405 101 aa-0.78□□□□□ -2.53
VPS28YPL065W YOR192C-CQ3E736 78 aa-0.78□□□□□ -2.53
VPS28YPL065W LSM2P38203 95 aaKnown RBP-0.79□□□□□ -2.54
VPS28YPL065W RPS27BP38711 82 aa-0.79□□□□□ -2.54
VPS28YPL065W YOR394C-AQ8TGJ0 55 aa-0.79□□□□□ -2.54
VPS28YPL065W HAP1P0CE41 1502 aa-0.79□□□□□ -2.54
VPS28YPL065W YGR146C-AQ8TGT9 53 aa-0.8□□□□□ -2.54
VPS28YPL065W MMS22Q06164 1454 aa-0.8□□□□□ -2.54
VPS28YPL065W YLR146W-AQ2V2P1 62 aa-0.81□□□□□ -2.54
VPS28YPL065W YBR200W-AQ3E755 54 aa-0.81□□□□□ -2.54
VPS28YPL065W YML054C-AQ3E809 52 aa-0.81□□□□□ -2.54
VPS28YPL065W MLP1Q02455 1875 aaKnown RBP-0.82□□□□□ -2.54
VPS28YPL065W TOM1Q03280 3268 aa-0.82□□□□□ -2.54
VPS28YPL065W YOR011W-AQ3E807 68 aa-0.82□□□□□ -2.54
VPS28YPL065W YMR105W-AQ8TGS8 64 aa-0.82□□□□□ -2.54
VPS28YPL065W YBL039W-BP0C268 59 aa-0.83□□□□□ -2.54
VPS28YPL065W YGR121W-AQ3E816 71 aa-0.83□□□□□ -2.54
VPS28YPL065W DNF1P32660 1571 aa-0.83□□□□□ -2.54
VPS28YPL065W TY1B-DR4Q07793 1604 aa-0.85□□□□□ -2.55
VPS28YPL065W RPL29P05747 59 aaPredicted RBP-0.85□□□□□ -2.55
VPS28YPL065W SPI1P40092 148 aa-0.85□□□□□ -2.55
VPS28YPL065W DNF2Q12675 1612 aa-0.86□□□□□ -2.55
VPS28YPL065W YDR034C-AP0C289 58 aa-0.86□□□□□ -2.55
VPS28YPL065W YBR230W-AQ3E762 66 aa-0.86□□□□□ -2.55
VPS28YPL065W SNQ2P32568 1501 aaKnown RBP-0.86□□□□□ -2.55
VPS28YPL065W ESP1Q03018 1630 aa-0.86□□□□□ -2.55
VPS28YPL065W TIM12P32830 109 aa-0.87□□□□□ -2.55
VPS28YPL065W YOR032W-AQ8TGS1 66 aa-0.87□□□□□ -2.55
VPS28YPL065W YOR093CQ12275 1648 aa-0.87□□□□□ -2.55
VPS28YPL065W RRP5Q05022 1729 aaKnown RBP-0.87□□□□□ -2.55
VPS28YPL065W FLO1P32768 1537 aa-0.88□□□□□ -2.55
VPS28YPL065W PDR12Q02785 1511 aa-0.88□□□□□ -2.55
VPS28YPL065W ULS1Q08562 1619 aa-0.88□□□□□ -2.55
VPS28YPL065W QCR9P22289 66 aa-0.88□□□□□ -2.55
VPS28YPL065W SWM2P40342 146 aa-0.88□□□□□ -2.55
VPS28YPL065W GCN2P15442 1659 aa-0.88□□□□□ -2.55
VPS28YPL065W PDR15Q04182 1529 aaKnown RBP-0.89□□□□□ -2.55
VPS28YPL065W RPS30AP0CX33 63 aaKnown RBP-0.89□□□□□ -2.55
VPS28YPL065W RPS30BP0CX34 63 aaKnown RBP-0.89□□□□□ -2.55
VPS28YPL065W BCK1Q01389 1478 aa-0.89□□□□□ -2.55
VPS28YPL065W ARO1P08566 1588 aaKnown RBP-0.89□□□□□ -2.55
VPS28YPL065W SSK2P53599 1579 aa-0.89□□□□□ -2.55
Retrieved 100 of 5,963 RNA–protein pairs in 13.2 ms