RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeastyeast

Gene RTR1, Length 681 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RTR1YER139C BPH1P25356 2167 aa0.15□□□□□ -2.39
RTR1YER139C UTP20P35194 2493 aaKnown RBP0.14□□□□□ -2.39
RTR1YER139C YBL039W-BP0C268 59 aa0.14□□□□□ -2.39
RTR1YER139C ERI1P62651 68 aaKnown RBP0.14□□□□□ -2.39
RTR1YER139C YOR008C-AQ3E7B9 74 aa0.14□□□□□ -2.39
RTR1YER139C RPO31P04051 1460 aa0.14□□□□□ -2.39
RTR1YER139C TY1B-DR6P0C2I3 1755 aa0.14□□□□□ -2.39
RTR1YER139C TY1B-LR2P0C2I5 1755 aa0.14□□□□□ -2.39
RTR1YER139C TY1B-PR3P0C2J1 1755 aaKnown RBP0.14□□□□□ -2.39
RTR1YER139C TY1B-JR2P47100 1755 aaKnown RBP0.14□□□□□ -2.39
RTR1YER139C TY1B-MR1Q04214 1755 aa0.14□□□□□ -2.39
RTR1YER139C TY1B-MR2Q04670 1755 aaKnown RBP0.14□□□□□ -2.39
RTR1YER139C TY1B-NL1Q12112 1755 aa0.14□□□□□ -2.39
RTR1YER139C TY1B-GR1Q12141 1755 aa0.14□□□□□ -2.39
RTR1YER139C TY1B-GR3Q12316 1755 aa0.14□□□□□ -2.39
RTR1YER139C TY1B-PLQ12414 1755 aaKnown RBP0.14□□□□□ -2.39
RTR1YER139C TY1B-ORQ92393 1755 aa0.14□□□□□ -2.39
RTR1YER139C STT4P37297 1900 aa0.13□□□□□ -2.39
RTR1YER139C IRC20Q06554 1556 aa0.13□□□□□ -2.39
RTR1YER139C TY1B-LR3P0C2I6 1755 aaKnown RBP0.13□□□□□ -2.39
RTR1YER139C TY2B-CP25384 1770 aa0.12□□□□□ -2.39
RTR1YER139C TY2B-DR1Q12472 1770 aa0.12□□□□□ -2.39
RTR1YER139C YSY6P38374 65 aa0.12□□□□□ -2.39
RTR1YER139C YOR032W-AQ8TGS1 66 aa0.12□□□□□ -2.39
RTR1YER139C APC1P53886 1748 aa0.12□□□□□ -2.39
RTR1YER139C ECM29P38737 1868 aa0.12□□□□□ -2.39
RTR1YER139C TY1B-DR5P0C2I2 1755 aa0.11□□□□□ -2.39
RTR1YER139C TY1B-PR1P0C2I9 1755 aaKnown RBP0.11□□□□□ -2.39
RTR1YER139C UTP10P42945 1769 aaKnown RBP0.11□□□□□ -2.39
RTR1YER139C TY1B-ER2Q03619 1755 aa0.11□□□□□ -2.39
RTR1YER139C TY1B-DR1Q03855 1755 aa0.11□□□□□ -2.39
RTR1YER139C TY1B-ML1Q04711 1755 aaKnown RBP0.11□□□□□ -2.39
RTR1YER139C TY1B-LR1Q12088 1755 aaKnown RBP0.11□□□□□ -2.39
RTR1YER139C TY1B-GR2Q12269 1755 aa0.11□□□□□ -2.39
RTR1YER139C TY1B-DR3Q99231 1755 aa0.11□□□□□ -2.39
RTR1YER139C VPS15P22219 1454 aa0.11□□□□□ -2.39
RTR1YER139C IQG1Q12280 1495 aa0.11□□□□□ -2.39
RTR1YER139C TOS6P48560 102 aa0.11□□□□□ -2.39
RTR1YER139C YBR230W-AQ3E762 66 aa0.11□□□□□ -2.39
RTR1YER139C DOP1Q03921 1698 aa0.11□□□□□ -2.39
RTR1YER139C KOG1P38873 1557 aa0.11□□□□□ -2.39
RTR1YER139C IML1P47170 1584 aa0.11□□□□□ -2.39
RTR1YER139C SCC2Q04002 1493 aa0.1□□□□□ -2.39
RTR1YER139C MLP1Q02455 1875 aaKnown RBP0.1□□□□□ -2.39
RTR1YER139C TY1B-JR1P47098 1755 aa0.1□□□□□ -2.39
RTR1YER139C TY1B-ML2Q03434 1755 aaKnown RBP0.1□□□□□ -2.39
RTR1YER139C TY1B-ER1Q03612 1755 aa0.1□□□□□ -2.39
RTR1YER139C TY1B-OLQ12273 1755 aa0.1□□□□□ -2.39
RTR1YER139C YMR001C-AQ8TGS9 76 aa0.1□□□□□ -2.39
RTR1YER139C TY2B-LR1P0C2J3 1770 aa0.09□□□□□ -2.39
RTR1YER139C TY2B-FP0CX63 1770 aa0.09□□□□□ -2.39
RTR1YER139C TY2B-GR2P0CX64 1770 aa0.09□□□□□ -2.39
RTR1YER139C TY2B-DR2Q03494 1770 aa0.09□□□□□ -2.39
RTR1YER139C TY2B-OR1Q12113 1770 aa0.09□□□□□ -2.39
RTR1YER139C TY2B-BQ12491 1770 aa0.09□□□□□ -2.39
RTR1YER139C TY2B-OR2Q12501 1770 aa0.09□□□□□ -2.39
RTR1YER139C YIL102C-AQ2V2P5 75 aa0.09□□□□□ -2.4
RTR1YER139C PMD1P32634 1753 aa0.09□□□□□ -2.4
RTR1YER139C HAP1P0CE41 1502 aa0.08□□□□□ -2.4
RTR1YER139C VTH1P40438 1549 aa0.08□□□□□ -2.4
RTR1YER139C VTH2P40890 1549 aa0.08□□□□□ -2.4
RTR1YER139C ARO1P08566 1588 aaKnown RBP0.08□□□□□ -2.4
RTR1YER139C RPS30AP0CX33 63 aaKnown RBP0.08□□□□□ -2.4
RTR1YER139C RPS30BP0CX34 63 aaKnown RBP0.08□□□□□ -2.4
RTR1YER139C SIP18P50263 79 aa0.08□□□□□ -2.4
RTR1YER139C YOL166W-AQ8TGJ1 51 aa0.08□□□□□ -2.4
RTR1YER139C TY2B-DR3Q07791 1770 aaKnown RBP0.08□□□□□ -2.4
RTR1YER139C TY3B-GQ99315 1547 aa0.08□□□□□ -2.4
RTR1YER139C TY1B-NL2Q99337 1749 aaKnown RBP0.07□□□□□ -2.4
RTR1YER139C MYO4P32492 1471 aa0.07□□□□□ -2.4
RTR1YER139C RPS27BP38711 82 aa0.06□□□□□ -2.4
RTR1YER139C YOL131WQ08270 108 aa0.06□□□□□ -2.4
RTR1YER139C YDR524C-BQ3E6R4 66 aa0.06□□□□□ -2.4
RTR1YER139C VMA9Q3E7B6 73 aa0.06□□□□□ -2.4
RTR1YER139C COA2Q3E823 68 aa0.06□□□□□ -2.4
RTR1YER139C TCB3Q03640 1545 aaKnown RBP0.06□□□□□ -2.4
RTR1YER139C PDR15Q04182 1529 aaKnown RBP0.05□□□□□ -2.4
RTR1YER139C DNF2Q12675 1612 aa0.05□□□□□ -2.4
RTR1YER139C TOR1P35169 2470 aa0.05□□□□□ -2.4
RTR1YER139C YGR146C-AQ8TGT9 53 aa0.04□□□□□ -2.4
RTR1YER139C PDR12Q02785 1511 aa0.03□□□□□ -2.4
RTR1YER139C VMR1P38735 1592 aa0.03□□□□□ -2.4
RTR1YER139C YLR157W-DP0CE99 70 aa0.03□□□□□ -2.4
RTR1YER139C YKL023C-AQ2V2P3 75 aa0.03□□□□□ -2.4
RTR1YER139C RPO21P04050 1733 aaKnown RBP0.03□□□□□ -2.4
RTR1YER139C DNF1P32660 1571 aa0.02□□□□□ -2.41
RTR1YER139C YFR010W-AP0C5N0 62 aa0□□□□□ -2.41
RTR1YER139C YOR072W-BQ3E832 53 aa-0.04□□□□□ -2.42
RTR1YER139C YCF1P39109 1515 aaKnown RBP-0.04□□□□□ -2.42
RTR1YER139C FKS3Q04952 1785 aa-0.04□□□□□ -2.42
RTR1YER139C RRP5Q05022 1729 aaKnown RBP-0.04□□□□□ -2.42
RTR1YER139C YGL258W-AQ3E740 77 aa-0.05□□□□□ -2.42
RTR1YER139C PDR5P33302 1511 aaKnown RBP-0.05□□□□□ -2.42
RTR1YER139C SNQ2P32568 1501 aaKnown RBP-0.06□□□□□ -2.42
RTR1YER139C YLL006W-AQ3E814 58 aa-0.06□□□□□ -2.42
RTR1YER139C TOR2P32600 2474 aaKnown RBP-0.08□□□□□ -2.42
RTR1YER139C FMP27Q06179 2628 aa-0.08□□□□□ -2.42
RTR1YER139C YHR050W-AQ05451 56 aa-0.08□□□□□ -2.42
RTR1YER139C YOR192C-CQ3E736 78 aa-0.08□□□□□ -2.42
RTR1YER139C SPO14P36126 1683 aa-0.08□□□□□ -2.42
Retrieved 100 of 5,963 RNA–protein pairs in 35.1 ms