RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeastyeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USE1YGL098W RPL36BO14455 100 aaKnown RBP2.51□□□□□ -2.01
USE1YGL098W RPL36AP05745 100 aaPredicted RBP2.51□□□□□ -2.01
USE1YGL098W RPL15AP05748 204 aaKnown RBP2.51□□□□□ -2.01
USE1YGL098W YKR045CP36138 183 aa2.51□□□□□ -2.01
USE1YGL098W ARC15P40518 154 aaRIP-Chip data2.51□□□□□ -2.01not detected
USE1YGL098W RPL26BP53221 127 aaKnown RBP2.51□□□□□ -2.01
USE1YGL098W MPC3P53311 146 aa2.51□□□□□ -2.01
USE1YGL098W RGM1Q00453 211 aa2.51□□□□□ -2.01
USE1YGL098W SMD1Q02260 146 aaPredicted RBP2.51□□□□□ -2.01
USE1YGL098W SPG4Q04438 115 aa2.51□□□□□ -2.01
USE1YGL098W SRL1Q08673 210 aa2.51□□□□□ -2.01
USE1YGL098W YOR268CQ08734 132 aa2.51□□□□□ -2.01
USE1YGL098W CRC1Q12289 327 aa2.51□□□□□ -2.01
USE1YGL098W YOR020W-AQ3E824 90 aa2.51□□□□□ -2.01
USE1YGL098W FPR1P20081 114 aaKnown RBP2.5□□□□□ -2.01
USE1YGL098W YHL005CP38752 130 aa2.5□□□□□ -2.01
USE1YGL098W MIG3P39943 394 aa2.5□□□□□ -2.01
USE1YGL098W YJR146WP47174 117 aa2.5□□□□□ -2.01
USE1YGL098W SPG1P50088 95 aa2.5□□□□□ -2.01
USE1YGL098W YDR274CP87283 123 aa2.5□□□□□ -2.01
USE1YGL098W YLR162WQ06235 118 aa2.5□□□□□ -2.01
USE1YGL098W NAG1Q8TGN9 163 aa2.5□□□□□ -2.01
USE1YGL098W DIF1O13577 133 aa2.49□□□□□ -2.01
USE1YGL098W RPB9P27999 122 aa2.49□□□□□ -2.01
USE1YGL098W YBL081WP38180 368 aaKnown RBP2.49□□□□□ -2.01
USE1YGL098W YFR035CP43608 114 aa2.49□□□□□ -2.01
USE1YGL098W LEE1Q02799 301 aaKnown RBP2.49□□□□□ -2.01
USE1YGL098W YDR524C-BQ3E6R4 66 aa2.49□□□□□ -2.01
USE1YGL098W SPO24Q3E752 67 aa2.49□□□□□ -2.01
USE1YGL098W TSC3Q3E790 80 aa2.49□□□□□ -2.01
USE1YGL098W OST5Q92316 86 aa2.49□□□□□ -2.01
USE1YGL098W YLR236CA0A023PZG4 107 aa2.48□□□□□ -2.01
USE1YGL098W KRE9P39005 276 aa2.48□□□□□ -2.01
USE1YGL098W YIR020CP40575 100 aa2.48□□□□□ -2.01
USE1YGL098W RPL38P49167 78 aaKnown RBP2.48□□□□□ -2.01
USE1YGL098W ATP18P81450 59 aa2.48□□□□□ -2.01
USE1YGL098W YOR376W-AQ3E805 51 aa2.48□□□□□ -2.01
USE1YGL098W YGR121W-AQ3E816 71 aa2.48□□□□□ -2.01
USE1YGL098W YML100W-AQ8TGT0 57 aa2.48□□□□□ -2.01
USE1YGL098W YFL015CP43578 164 aa2.47□□□□□ -2.01
USE1YGL098W YJL027CP47063 138 aaPredicted RBP2.47□□□□□ -2.01
USE1YGL098W TOS8P53147 276 aa2.47□□□□□ -2.01
USE1YGL098W YMR122CQ03879 124 aa2.47□□□□□ -2.01
USE1YGL098W NOP10Q6Q547 58 aaPredicted RBP2.47□□□□□ -2.01
USE1YGL098W HHF1P02309 103 aaKnown RBP2.46□□□□□ -2.02
USE1YGL098W YER188C-AP0C0V2 99 aa2.46□□□□□ -2.02
USE1YGL098W MRPL39P36533 70 aa2.46□□□□□ -2.02
USE1YGL098W YIL086CP40503 102 aa2.46□□□□□ -2.02
USE1YGL098W EDC1P53080 175 aaPredicted RBP2.46□□□□□ -2.02
USE1YGL098W YGL088WP53151 121 aa2.46□□□□□ -2.02
USE1YGL098W YDR114CQ04597 100 aa2.46□□□□□ -2.02
USE1YGL098W YOL160WQ08321 113 aa2.46□□□□□ -2.02
USE1YGL098W RNH203Q12338 110 aa2.46□□□□□ -2.02
USE1YGL098W YOR034C-AQ3E735 80 aa2.46□□□□□ -2.02
USE1YGL098W YOR032W-AQ8TGS1 66 aa2.46□□□□□ -2.02
USE1YGL098W CDC39P25655 2108 aaKnown RBP2.45□□□□□ -2.02
USE1YGL098W RPS30AP0CX33 63 aaKnown RBP2.45□□□□□ -2.02
USE1YGL098W RPS30BP0CX34 63 aaKnown RBP2.45□□□□□ -2.02
USE1YGL098W YEL008WP40001 126 aa2.45□□□□□ -2.02
USE1YGL098W YER084WP40057 128 aa2.45□□□□□ -2.02
USE1YGL098W POR2P40478 281 aa2.45□□□□□ -2.02
USE1YGL098W RPR2P40571 144 aa2.45□□□□□ -2.02
USE1YGL098W YGL193CP53097 103 aa2.45□□□□□ -2.02
USE1YGL098W YBR200W-AQ3E755 54 aa2.45□□□□□ -2.02
USE1YGL098W YGR035W-AQ45U48 73 aa2.45□□□□□ -2.02
USE1YGL098W CYR1P08678 2026 aaKnown RBP2.45□□□□□ -2.02
USE1YGL098W RPS23AP0CX29 145 aaKnown RBP2.44□□□□□ -2.02
USE1YGL098W RPS23BP0CX30 145 aa2.44□□□□□ -2.02
USE1YGL098W YEL045CP32616 141 aa2.44□□□□□ -2.02
USE1YGL098W MRPL38P35996 138 aaPredicted RBP2.44□□□□□ -2.02
USE1YGL098W SIP18P50263 79 aa2.44□□□□□ -2.02
USE1YGL098W YPS5P53057 165 aa2.44□□□□□ -2.02
USE1YGL098W YGL034CP53186 121 aa2.44□□□□□ -2.02
USE1YGL098W SED1Q01589 338 aa2.44□□□□□ -2.02
USE1YGL098W YMR244WQ04018 355 aa2.44□□□□□ -2.02
USE1YGL098W YOL166W-AQ8TGJ1 51 aa2.44□□□□□ -2.02
USE1YGL098W YHL037CP38733 133 aa2.43□□□□□ -2.02
USE1YGL098W COX14P39103 70 aa2.43□□□□□ -2.02
USE1YGL098W YAL064WP39711 94 aa2.43□□□□□ -2.02
USE1YGL098W YPR153WQ06537 140 aa2.43□□□□□ -2.02
USE1YGL098W YLL006W-AQ3E814 58 aa2.43□□□□□ -2.02
USE1YGL098W HUB1Q6Q546 73 aa2.43□□□□□ -2.02
USE1YGL098W YFR009W-AP0C5M9 85 aa2.42□□□□□ -2.02
USE1YGL098W YER135CP40082 130 aa2.42□□□□□ -2.02
USE1YGL098W CCW12Q12127 133 aa2.42□□□□□ -2.02
USE1YGL098W YMR105W-AQ8TGS8 64 aa2.42□□□□□ -2.02
USE1YGL098W DDR48P18899 430 aaKnown RBP2.41□□□□□ -2.02
USE1YGL098W FYV5P25585 152 aa2.41□□□□□ -2.02
USE1YGL098W UTH1P36135 365 aa2.41□□□□□ -2.02
USE1YGL098W YIL102CP40488 101 aa2.41□□□□□ -2.02
USE1YGL098W PMP3P87284 55 aa2.41□□□□□ -2.02
USE1YGL098W COX17Q12287 69 aa2.41□□□□□ -2.02
USE1YGL098W YOL085CQ99345 113 aa2.41□□□□□ -2.02
USE1YGL098W RPL39P04650 51 aa2.4□□□□□ -2.03
USE1YGL098W YCR043CP25361 127 aa2.4□□□□□ -2.03
USE1YGL098W HOT13P36078 116 aa2.4□□□□□ -2.03
USE1YGL098W SPC1P46965 94 aa2.4□□□□□ -2.03
USE1YGL098W YCR095W-AQ3E787 52 aa2.4□□□□□ -2.03
USE1YGL098W COX23P38824 151 aa2.39□□□□□ -2.03
USE1YGL098W LIP1Q03579 150 aa2.39□□□□□ -2.03
Retrieved 100 of 5,963 RNA–protein pairs in 72.3 ms