RNA–Protein interactions for RNA: YNR004W

SWM2, Transcript of Protein with a role in snRNA and snoRNA cap trimethylation, yeast

Gene SWM2, Length 441 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SWM2	YNR004W	BNI1	P41832	1953 aa		0.45	□□□□□ -2.34
SWM2	YNR004W	CCW14	O13547	238 aa		0.45	□□□□□ -2.34
SWM2	YNR004W	SNA2	P56508	79 aa		0.45	□□□□□ -2.34
SWM2	YNR004W	YOS1	Q3E834	85 aa		0.45	□□□□□ -2.34
SWM2	YNR004W	YNL190W	P53872	204 aa		0.44	□□□□□ -2.34
SWM2	YNR004W	SEC16	P48415	2195 aa	Known RBP	0.44	□□□□□ -2.34
SWM2	YNR004W	TY1B-H	O13535	1793 aa		0.43	□□□□□ -2.34
SWM2	YNR004W	GNA1	P43577	159 aa	Predicted RBP	0.43	□□□□□ -2.34
SWM2	YNR004W	SPP41	P38904	1435 aa		0.43	□□□□□ -2.34
SWM2	YNR004W	BUD23	P25627	275 aa	Predicted RBP	0.42	□□□□□ -2.34
SWM2	YNR004W	YBR292C	P38357	123 aa		0.42	□□□□□ -2.34
SWM2	YNR004W	PAU20	Q08322	120 aa		0.42	□□□□□ -2.34
SWM2	YNR004W	YCR095W-A	Q3E787	52 aa		0.42	□□□□□ -2.34
SWM2	YNR004W	RPO41	P13433	1351 aa	Known RBP	0.42	□□□□□ -2.34
SWM2	YNR004W	TY4B-H	P0C2J7	1802 aa		0.41	□□□□□ -2.34
SWM2	YNR004W	RPA12	P32529	125 aa	Known RBP	0.41	□□□□□ -2.34
SWM2	YNR004W	YMR090W	Q04304	227 aa	Known RBP	0.41	□□□□□ -2.34
SWM2	YNR004W	ICY1	Q04329	127 aa		0.41	□□□□□ -2.34
SWM2	YNR004W	RPS11A	P0CX47	156 aa	Known RBP	0.4	□□□□□ -2.35
SWM2	YNR004W	RPS11B	P0CX48	156 aa	Known RBP	0.4	□□□□□ -2.35
SWM2	YNR004W	YNL198C	P40166	100 aa		0.4	□□□□□ -2.35
SWM2	YNR004W	MRX7	P53869	86 aa		0.4	□□□□□ -2.35
SWM2	YNR004W	YLR419W	Q06698	1435 aa	Known RBP	0.39	□□□□□ -2.35
SWM2	YNR004W	SNF2	P22082	1703 aa		0.39	□□□□□ -2.35
SWM2	YNR004W	SRB8	P25648	1427 aa		0.38	□□□□□ -2.35
SWM2	YNR004W	YMR103C	Q04436	120 aa		0.38	□□□□□ -2.35
SWM2	YNR004W	MIC10	Q96VH5	97 aa		0.38	□□□□□ -2.35
SWM2	YNR004W	BRR2	P32639	2163 aa	Known RBP	0.38	□□□□□ -2.35
SWM2	YNR004W	FAS2	P19097	1887 aa	Known RBP	0.37	□□□□□ -2.35
SWM2	YNR004W	YER039C-A	P0CD97	72 aa		0.37	□□□□□ -2.35
SWM2	YNR004W	PDX3	P38075	228 aa	Known RBP	0.37	□□□□□ -2.35
SWM2	YNR004W	RGI1	P40043	161 aa	Predicted RBP	0.37	□□□□□ -2.35
SWM2	YNR004W	AIM19	P40502	157 aa		0.37	□□□□□ -2.35
SWM2	YNR004W	RPS12	P48589	143 aa	Known RBP	0.37	□□□□□ -2.35
SWM2	YNR004W	PAU1	P0CE88	120 aa		0.36	□□□□□ -2.35
SWM2	YNR004W	PAU14	P0CE89	120 aa		0.36	□□□□□ -2.35
SWM2	YNR004W	PAU6	P0CE90	120 aa		0.36	□□□□□ -2.35
SWM2	YNR004W	PAU18	P0CE91	120 aa		0.36	□□□□□ -2.35
SWM2	YNR004W	PAU8	P0CE92	120 aa		0.36	□□□□□ -2.35
SWM2	YNR004W	PAU11	P0CE93	120 aa		0.36	□□□□□ -2.35
SWM2	YNR004W	PAU13	P38725	120 aa		0.36	□□□□□ -2.35
SWM2	YNR004W	EMC5	P40540	141 aa		0.36	□□□□□ -2.35
SWM2	YNR004W	PAU10	Q03050	120 aa		0.36	□□□□□ -2.35
SWM2	YNR004W	PAU9	Q3E770	120 aa		0.36	□□□□□ -2.35
SWM2	YNR004W	YRF1-6	P53819	1859 aa		0.35	□□□□□ -2.35
SWM2	YNR004W	SEC7	P11075	2009 aa	Known RBP	0.35	□□□□□ -2.35
SWM2	YNR004W	RSM18	P40033	138 aa		0.35	□□□□□ -2.35
SWM2	YNR004W	LYS2	P07702	1392 aa		0.34	□□□□□ -2.35
SWM2	YNR004W	UBC4	P15731	148 aa		0.34	□□□□□ -2.36
SWM2	YNR004W	MRPL38	P35996	138 aa	Predicted RBP	0.34	□□□□□ -2.36
SWM2	YNR004W	SGF11	Q03067	99 aa		0.34	□□□□□ -2.36
SWM2	YNR004W	YDR210W	Q03482	75 aa		0.34	□□□□□ -2.36
SWM2	YNR004W	YJR107C-A	P0CT86	78 aa		0.33	□□□□□ -2.36
SWM2	YNR004W	YBR090C	P38253	122 aa		0.33	□□□□□ -2.36
SWM2	YNR004W	RPL38	P49167	78 aa	Known RBP	0.33	□□□□□ -2.36
SWM2	YNR004W	PAU4	P53427	120 aa		0.33	□□□□□ -2.36
SWM2	YNR004W	MYO1	P08964	1928 aa		0.32	□□□□□ -2.36
SWM2	YNR004W	LHP1	P33399	275 aa	Known RBP	0.32	□□□□□ -2.36
SWM2	YNR004W	RPC10	P40422	70 aa		0.32	□□□□□ -2.36
SWM2	YNR004W	MIX14	Q04341	121 aa		0.32	□□□□□ -2.36
SWM2	YNR004W	TAO3	P40468	2376 aa		0.31	□□□□□ -2.36
SWM2	YNR004W	UBC5	P15732	148 aa		0.31	□□□□□ -2.36
SWM2	YNR004W	PAU5	P43575	122 aa		0.31	□□□□□ -2.36
SWM2	YNR004W	YNR034W-A	Q3E841	98 aa		0.31	□□□□□ -2.36
SWM2	YNR004W	YIL134C-A	Q45U18	67 aa		0.31	□□□□□ -2.36
SWM2	YNR004W	SSN2	P38931	1420 aa		0.3	□□□□□ -2.36
SWM2	YNR004W	YFR009W-A	P0C5M9	85 aa		0.3	□□□□□ -2.36
SWM2	YNR004W	ROX3	P25046	220 aa		0.3	□□□□□ -2.36
SWM2	YNR004W	YHL005C	P38752	130 aa		0.3	□□□□□ -2.36
SWM2	YNR004W	SNU13	P39990	126 aa	Known RBP	0.3	□□□□□ -2.36
SWM2	YNR004W	KRE5	P22023	1365 aa		0.3	□□□□□ -2.36
SWM2	YNR004W	YBL071C	P38185	102 aa		0.29	□□□□□ -2.36
SWM2	YNR004W	YER137C	P40083	148 aa	Known RBP	0.29	□□□□□ -2.36
SWM2	YNR004W	URB1	P34241	1764 aa	Known RBP	0.28	□□□□□ -2.36
SWM2	YNR004W	RSM19	P53733	91 aa	Predicted RBP	0.28	□□□□□ -2.36
SWM2	YNR004W	HMRA1	P0CY11	126 aa		0.27	□□□□□ -2.37
SWM2	YNR004W	TSC11	P40061	1430 aa		0.27	□□□□□ -2.37
SWM2	YNR004W	POL2	P21951	2222 aa	Known RBP	0.25	□□□□□ -2.37
SWM2	YNR004W	GEA1	P47102	1408 aa	Predicted RBP	0.25	□□□□□ -2.37
SWM2	YNR004W	COX7	P10174	60 aa		0.25	□□□□□ -2.37
SWM2	YNR004W	YBR016W	P38216	128 aa		0.24	□□□□□ -2.37
SWM2	YNR004W	SPC1	P46965	94 aa		0.24	□□□□□ -2.37
SWM2	YNR004W	GEA2	P39993	1459 aa	Known RBP	0.23	□□□□□ -2.37
SWM2	YNR004W	TOM6	P33448	61 aa		0.23	□□□□□ -2.37
SWM2	YNR004W	NHP10	Q03435	203 aa		0.23	□□□□□ -2.37
SWM2	YNR004W	YOR289W	Q12012	251 aa	Predicted RBP	0.23	□□□□□ -2.37
SWM2	YNR004W	FYV7	Q12247	151 aa		0.23	□□□□□ -2.37
SWM2	YNR004W	YNL042W-B	Q3E7Z2	85 aa		0.23	□□□□□ -2.37
SWM2	YNR004W	SUS1	Q6WNK7	96 aa		0.23	□□□□□ -2.37
SWM2	YNR004W	KSH1	Q8TGJ3	72 aa		0.23	□□□□□ -2.37
SWM2	YNR004W	YKL068W-A	Q3E826	78 aa		0.22	□□□□□ -2.37
SWM2	YNR004W	YHR214C-D	P0CX93	97 aa		0.21	□□□□□ -2.38
SWM2	YNR004W	NHP2	P32495	156 aa	Predicted RBP	0.21	□□□□□ -2.38
SWM2	YNR004W	MHF2	Q3E829	80 aa		0.21	□□□□□ -2.38
SWM2	YNR004W	Q0032	Q9ZZX7	96 aa		0.21	□□□□□ -2.38
SWM2	YNR004W	BSC4	P53841	131 aa		0.2	□□□□□ -2.38
SWM2	YNR004W	ZEO1	Q08245	113 aa		0.2	□□□□□ -2.38
SWM2	YNR004W	YDR029W	Q12111	104 aa		0.2	□□□□□ -2.38
SWM2	YNR004W	TY3B-I	Q7LHG5	1498 aa	Known RBP	0.2	□□□□□ -2.38
SWM2	YNR004W	CAT8	P39113	1433 aa		0.2	□□□□□ -2.38

Retrieved 100 of 5,963 RNA–protein pairs in 45.5 ms