RNA–Protein interactions for RNA: YBL024W

NCL1, Transcript of S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase, yeast

Gene NCL1, Length 2,055 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NCL1	YBL024W	RPL14A	P36105	138 aa	Known RBP	0.99	□□□□□ -2.25
NCL1	YBL024W	ECM31	P38122	312 aa		0.99	□□□□□ -2.25
NCL1	YBL024W	RPL14B	P38754	138 aa	Known RBP	0.99	□□□□□ -2.25
NCL1	YBL024W	GIM4	P40005	111 aa	Known RBP	0.99	□□□□□ -2.25
NCL1	YBL024W	PHB1	P40961	287 aa		0.99	□□□□□ -2.25
NCL1	YBL024W	APS3	P47064	194 aa		0.99	□□□□□ -2.25
NCL1	YBL024W	YOR385W	Q08909	290 aa		0.99	□□□□□ -2.25
NCL1	YBL024W	YLR361C-A	Q3E795	98 aa		0.99	□□□□□ -2.25
NCL1	YBL024W	HPM1	P40481	377 aa		0.98	□□□□□ -2.25
NCL1	YBL024W	YNL019C	P53975	284 aa		0.98	□□□□□ -2.25
NCL1	YBL024W	SOM1	Q05676	74 aa		0.98	□□□□□ -2.25
NCL1	YBL024W	NUP159	P40477	1460 aa		0.98	□□□□□ -2.25
NCL1	YBL024W	NHP6A	P11632	93 aa	Known RBP	0.98	□□□□□ -2.25
NCL1	YBL024W	ATG8	P38182	117 aa	RIP-Chip data	0.98	□□□□□ -2.25	not detected
NCL1	YBL024W	HUA1	P40325	198 aa		0.98	□□□□□ -2.25
NCL1	YBL024W	DIE2	P50076	525 aa		0.98	□□□□□ -2.25
NCL1	YBL024W	EMC4	P53073	190 aa		0.98	□□□□□ -2.25
NCL1	YBL024W	HUT1	Q12520	339 aa		0.98	□□□□□ -2.25
NCL1	YBL024W	DDP1	Q99321	188 aa	Known RBP	0.98	□□□□□ -2.25
NCL1	YBL024W	NUP170	P38181	1502 aa		0.98	□□□□□ -2.25
NCL1	YBL024W	SPP41	P38904	1435 aa		0.97	□□□□□ -2.25
NCL1	YBL024W	XRN1	P22147	1528 aa	Known RBP	0.97	□□□□□ -2.25
NCL1	YBL024W	PRS3	P38689	320 aa	Known RBP	0.97	□□□□□ -2.25
NCL1	YBL024W	DCV1	P43595	202 aa		0.97	□□□□□ -2.25
NCL1	YBL024W	LSM8	P47093	109 aa	Known RBP	0.97	□□□□□ -2.25
NCL1	YBL024W	TIM8	P57744	87 aa		0.97	□□□□□ -2.25
NCL1	YBL024W	YCR050C	P25630	102 aa		0.96	□□□□□ -2.25
NCL1	YBL024W	SUA7	P29055	345 aa	Predicted RBP	0.96	□□□□□ -2.25
NCL1	YBL024W	RPS1A	P33442	255 aa	Known RBP	0.96	□□□□□ -2.25
NCL1	YBL024W	POP7	P38291	140 aa		0.96	□□□□□ -2.25
NCL1	YBL024W	VMA10	P48836	114 aa	Known RBP	0.96	□□□□□ -2.25
NCL1	YBL024W	SPG1	P50088	95 aa		0.96	□□□□□ -2.25
NCL1	YBL024W	VAM10	Q08474	114 aa		0.96	□□□□□ -2.25
NCL1	YBL024W	DNF3	Q12674	1656 aa		0.96	□□□□□ -2.26
NCL1	YBL024W	ARO1	P08566	1588 aa	Known RBP	0.96	□□□□□ -2.26
NCL1	YBL024W	DOP1	Q03921	1698 aa		0.96	□□□□□ -2.26
NCL1	YBL024W	HYP2	P23301	157 aa	Known RBP	0.96	□□□□□ -2.26
NCL1	YBL024W	TMA23	Q03525	211 aa		0.96	□□□□□ -2.26
NCL1	YBL024W	YDR278C	Q05612	105 aa		0.96	□□□□□ -2.26
NCL1	YBL024W	RAF1	Q06891	181 aa		0.96	□□□□□ -2.26
NCL1	YBL024W	TAO3	P40468	2376 aa		0.96	□□□□□ -2.26
NCL1	YBL024W	RIF1	P29539	1916 aa		0.96	□□□□□ -2.26
NCL1	YBL024W	GDB1	Q06625	1536 aa		0.96	□□□□□ -2.26
NCL1	YBL024W	FMP49	A0A023PZB3	126 aa		0.95	□□□□□ -2.26
NCL1	YBL024W	RPS20	P38701	121 aa	Known RBP	0.95	□□□□□ -2.26
NCL1	YBL024W	YAL064W	P39711	94 aa		0.95	□□□□□ -2.26
NCL1	YBL024W	SED1	Q01589	338 aa		0.95	□□□□□ -2.26
NCL1	YBL024W	ELC1	Q03071	99 aa		0.95	□□□□□ -2.26
NCL1	YBL024W	YMR007W	Q03675	126 aa		0.95	□□□□□ -2.26
NCL1	YBL024W	TVP18	Q04767	167 aa		0.95	□□□□□ -2.26
NCL1	YBL024W	CCW12	Q12127	133 aa		0.95	□□□□□ -2.26
NCL1	YBL024W	YNL277W-A	Q3E7Z0	62 aa		0.95	□□□□□ -2.26
NCL1	YBL024W	YSP2	Q06681	1438 aa		0.95	□□□□□ -2.26
NCL1	YBL024W	HYM1	P32464	399 aa		0.95	□□□□□ -2.26
NCL1	YBL024W	SEN15	Q04675	128 aa		0.95	□□□□□ -2.26
NCL1	YBL024W	LCL2	Q08045	131 aa		0.95	□□□□□ -2.26
NCL1	YBL024W	TY1B-BR	Q12193	1756 aa		0.94	□□□□□ -2.26
NCL1	YBL024W	TY1B-GR3	Q12316	1755 aa		0.94	□□□□□ -2.26
NCL1	YBL024W	TY1B-OR	Q92393	1755 aa		0.94	□□□□□ -2.26
NCL1	YBL024W	YAR064W	P39563	99 aa		0.94	□□□□□ -2.26
NCL1	YBL024W	DYN2	Q02647	92 aa		0.94	□□□□□ -2.26
NCL1	YBL024W	MHF1	Q3E835	90 aa		0.94	□□□□□ -2.26
NCL1	YBL024W	CDC39	P25655	2108 aa	Known RBP	0.94	□□□□□ -2.26
NCL1	YBL024W	SLH1	P53327	1967 aa	Known RBP	0.94	□□□□□ -2.26
NCL1	YBL024W	USO1	P25386	1790 aa		0.94	□□□□□ -2.26
NCL1	YBL024W	VPS13	Q07878	3144 aa		0.94	□□□□□ -2.26
NCL1	YBL024W	TOP2	P06786	1428 aa	Known RBP	0.93	□□□□□ -2.26
NCL1	YBL024W	RPL33A	P05744	107 aa	Known RBP	0.93	□□□□□ -2.26
NCL1	YBL024W	YGL014C-A	P0C5N1	53 aa		0.93	□□□□□ -2.26
NCL1	YBL024W	QCR10	P37299	77 aa		0.93	□□□□□ -2.26
NCL1	YBL024W	SFT1	P43682	97 aa		0.93	□□□□□ -2.26
NCL1	YBL024W	RPL37A	P49166	88 aa	Known RBP	0.93	□□□□□ -2.26
NCL1	YBL024W	NAT5	Q08689	176 aa		0.93	□□□□□ -2.26
NCL1	YBL024W	ATP14	Q12349	124 aa		0.93	□□□□□ -2.26
NCL1	YBL024W	ULS1	Q08562	1619 aa		0.93	□□□□□ -2.26
NCL1	YBL024W	HAP1	P0CE41	1502 aa		0.93	□□□□□ -2.26
NCL1	YBL024W	BCK1	Q01389	1478 aa		0.93	□□□□□ -2.26
NCL1	YBL024W	YBR056W-A	I2HB52	66 aa		0.93	□□□□□ -2.26
NCL1	YBL024W	FUN14	P18411	198 aa		0.93	□□□□□ -2.26
NCL1	YBL024W	SFT2	P38166	215 aa		0.93	□□□□□ -2.26
NCL1	YBL024W	PHS1	P40857	217 aa		0.93	□□□□□ -2.26
NCL1	YBL024W	BRP1	P53194	125 aa		0.93	□□□□□ -2.26
NCL1	YBL024W	YGR017W	P53210	297 aa		0.93	□□□□□ -2.26
NCL1	YBL024W	YPL067C	Q02754	198 aa		0.93	□□□□□ -2.26
NCL1	YBL024W	TOR2	P32600	2474 aa	Known RBP	0.93	□□□□□ -2.26
NCL1	YBL024W	ESP1	Q03018	1630 aa		0.93	□□□□□ -2.26
NCL1	YBL024W	TY3B-G	Q99315	1547 aa		0.92	□□□□□ -2.26
NCL1	YBL024W	RAD50	P12753	1312 aa		0.92	□□□□□ -2.26
NCL1	YBL024W	SDH7	Q04401	133 aa		0.92	□□□□□ -2.26
NCL1	YBL024W	CNL1	Q06333	122 aa		0.92	□□□□□ -2.26
NCL1	YBL024W	MMS22	Q06164	1454 aa		0.92	□□□□□ -2.26
NCL1	YBL024W	YOL013W-A	P0C272	63 aa	Predicted RBP	0.92	□□□□□ -2.26
NCL1	YBL024W	NMT1	P14743	455 aa		0.92	□□□□□ -2.26
NCL1	YBL024W	MRPL44	P19956	98 aa		0.92	□□□□□ -2.26
NCL1	YBL024W	YCR001W	P25347	104 aa		0.92	□□□□□ -2.26
NCL1	YBL024W	YGL149W	P53116	101 aa		0.92	□□□□□ -2.26
NCL1	YBL024W	PDR11	P40550	1411 aa		0.91	□□□□□ -2.26
NCL1	YBL024W	SMC4	Q12267	1418 aa		0.91	□□□□□ -2.26
NCL1	YBL024W	BUD3	P25558	1636 aa		0.91	□□□□□ -2.26
NCL1	YBL024W	GCN1	P33892	2672 aa	Known RBP	0.91	□□□□□ -2.26

Retrieved 100 of 5,963 RNA–protein pairs in 7.3 ms