RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEP1	YAL013W	TY1A-GR1	Q12085	440 aa		11.26	□□□□□ -0.61
DEP1	YAL013W	YPR145C-A	Q2V2P0	78 aa		11.26	□□□□□ -0.61
DEP1	YAL013W	TY1A-PR3	Q6Q5H1	440 aa	Known RBP	11.26	□□□□□ -0.61
DEP1	YAL013W	TY1A-OL	Q92392	440 aa	Known RBP	11.26	□□□□□ -0.61
DEP1	YAL013W	MRPL38	P35996	138 aa	Predicted RBP	11.25	□□□□□ -0.61
DEP1	YAL013W	CDS1	P38221	457 aa		11.25	□□□□□ -0.61
DEP1	YAL013W	PET100	P38958	111 aa		11.25	□□□□□ -0.61
DEP1	YAL013W	LSM4	P40070	187 aa	Known RBP	11.25	□□□□□ -0.61
DEP1	YAL013W	TIM21	P53220	239 aa		11.25	□□□□□ -0.61
DEP1	YAL013W	YML122C	Q03207	126 aa		11.25	□□□□□ -0.61
DEP1	YAL013W	PBP4	Q07362	185 aa	Known RBP	11.25	□□□□□ -0.61
DEP1	YAL013W	RXT3	Q07458	294 aa		11.25	□□□□□ -0.61
DEP1	YAL013W	AVT5	P38176	459 aa		11.24	□□□□□ -0.61
DEP1	YAL013W	DSK2	P48510	373 aa		11.24	□□□□□ -0.61
DEP1	YAL013W	YPS1	P32329	569 aa		11.23	□□□□□ -0.61
DEP1	YAL013W	TRS20	P38334	175 aa		11.23	□□□□□ -0.61
DEP1	YAL013W	ATG27	P46989	271 aa		11.23	□□□□□ -0.61
DEP1	YAL013W	IRC23	Q08416	157 aa		11.23	□□□□□ -0.61
DEP1	YAL013W	CDC7	P06243	507 aa		11.22	□□□□□ -0.61
DEP1	YAL013W	FEN2	P25621	512 aa	Known RBP	11.22	□□□□□ -0.61
DEP1	YAL013W	INO2	P26798	304 aa		11.22	□□□□□ -0.61
DEP1	YAL013W	LAC1	P28496	418 aa		11.22	□□□□□ -0.61
DEP1	YAL013W	RPS0A	P32905	252 aa	Known RBP	11.22	□□□□□ -0.61
DEP1	YAL013W	AFR1	P33304	620 aa		11.22	□□□□□ -0.61
DEP1	YAL013W	PGD1	P40356	397 aa		11.22	□□□□□ -0.61
DEP1	YAL013W	YGR219W	P53307	113 aa		11.22	□□□□□ -0.61
DEP1	YAL013W	ADH3	P07246	375 aa	Known RBP	11.21	□□□□□ -0.61
DEP1	YAL013W	POP5	P28005	173 aa		11.21	□□□□□ -0.61
DEP1	YAL013W	NTF2	P33331	125 aa	Known RBP	11.21	□□□□□ -0.61
DEP1	YAL013W	ATG8	P38182	117 aa	RIP-Chip data	11.21	□□□□□ -0.61	not detected
DEP1	YAL013W	RRT1	P38192	103 aa		11.21	□□□□□ -0.61
DEP1	YAL013W	SRL1	Q08673	210 aa		11.21	□□□□□ -0.61
DEP1	YAL013W	YLR118C	Q12354	227 aa		11.21	□□□□□ -0.61
DEP1	YAL013W	RPS22A	P0C0W1	130 aa	Known RBP	11.2	□□□□□ -0.62
DEP1	YAL013W	RNA15	P25299	296 aa	Predicted RBP	11.2	□□□□□ -0.62
DEP1	YAL013W	MRPL4	P36517	319 aa		11.2	□□□□□ -0.62
DEP1	YAL013W	PRS4	P38063	326 aa	Predicted RBP	11.2	□□□□□ -0.62
DEP1	YAL013W	ICS2	P38284	255 aa		11.2	□□□□□ -0.62
DEP1	YAL013W	HST4	P53688	370 aa		11.2	□□□□□ -0.62
DEP1	YAL013W	SWT21	P53873	357 aa	Predicted RBP	11.2	□□□□□ -0.62
DEP1	YAL013W	SDH7	Q04401	133 aa		11.2	□□□□□ -0.62
DEP1	YAL013W	DFR1	P07807	211 aa	Known RBP RIP-Chip data	11.19	□□□□□ -0.62	not detected
DEP1	YAL013W	YHR213W	P0CI67	198 aa		11.19	□□□□□ -0.62
DEP1	YAL013W	COQ3	P27680	312 aa		11.19	□□□□□ -0.62
DEP1	YAL013W	MRPS9	P38120	278 aa		11.19	□□□□□ -0.62
DEP1	YAL013W	SFT2	P38166	215 aa		11.19	□□□□□ -0.62
DEP1	YAL013W	YER188W	P40103	239 aa		11.19	□□□□□ -0.62
DEP1	YAL013W	OCA2	P53949	197 aa		11.19	□□□□□ -0.62
DEP1	YAL013W	LOA1	Q06508	300 aa		11.19	□□□□□ -0.62
DEP1	YAL013W	MIA40	P36046	403 aa		11.18	□□□□□ -0.62
DEP1	YAL013W	IMD2	P38697	523 aa	Known RBP	11.18	□□□□□ -0.62
DEP1	YAL013W	YJL027C	P47063	138 aa	Predicted RBP	11.18	□□□□□ -0.62
DEP1	YAL013W	YNR071C	P53757	342 aa		11.18	□□□□□ -0.62
DEP1	YAL013W	LDS2	Q08218	356 aa		11.18	□□□□□ -0.62
DEP1	YAL013W	AYT1	Q12226	474 aa		11.18	□□□□□ -0.62
DEP1	YAL013W	RPS2	P25443	254 aa	Known RBP	11.17	□□□□□ -0.62
DEP1	YAL013W	TIF11	P38912	153 aa	Known RBP	11.17	□□□□□ -0.62
DEP1	YAL013W	GLE2	P40066	365 aa		11.17	□□□□□ -0.62
DEP1	YAL013W	VMA21	P41806	77 aa		11.17	□□□□□ -0.62
DEP1	YAL013W	IMP2	P46972	177 aa		11.17	□□□□□ -0.62
DEP1	YAL013W	DAN1	P47178	298 aa		11.17	□□□□□ -0.62
DEP1	YAL013W	LSM2	P38203	95 aa	Known RBP	11.16	□□□□□ -0.62
DEP1	YAL013W	CYB5	P40312	120 aa		11.16	□□□□□ -0.62
DEP1	YAL013W	PAU15	P40585	124 aa		11.16	□□□□□ -0.62
DEP1	YAL013W	LRS4	Q04087	347 aa	Known RBP	11.16	□□□□□ -0.62
DEP1	YAL013W	SPG4	Q04438	115 aa		11.16	□□□□□ -0.62
DEP1	YAL013W	FIT2	Q08906	153 aa		11.16	□□□□□ -0.62
DEP1	YAL013W	CYC3	P06182	269 aa		11.15	□□□□□ -0.62
DEP1	YAL013W	PET494	P07390	489 aa	Predicted RBP	11.15	□□□□□ -0.62
DEP1	YAL013W	HSP12	P22943	109 aa	Known RBP	11.15	□□□□□ -0.62
DEP1	YAL013W	HMX1	P32339	317 aa		11.15	□□□□□ -0.62
DEP1	YAL013W	TIM18	Q08749	192 aa		11.15	□□□□□ -0.62
DEP1	YAL013W	SDH4	P37298	181 aa		11.14	□□□□□ -0.63
DEP1	YAL013W	MIC12	P38341	106 aa		11.14	□□□□□ -0.63
DEP1	YAL013W	GPI2	P46961	280 aa		11.14	□□□□□ -0.63
DEP1	YAL013W	MRX11	Q03079	207 aa		11.14	□□□□□ -0.63
DEP1	YAL013W	CCW14	O13547	238 aa		11.13	□□□□□ -0.63
DEP1	YAL013W	DDI2	P0CH63	225 aa		11.12	□□□□□ -0.63
DEP1	YAL013W	DDI3	P0CH64	225 aa		11.12	□□□□□ -0.63
DEP1	YAL013W	YHR173C	P38864	112 aa		11.12	□□□□□ -0.63
DEP1	YAL013W	VPS55	P47111	140 aa		11.12	□□□□□ -0.63
DEP1	YAL013W	CPD1	P53314	239 aa		11.12	□□□□□ -0.63
DEP1	YAL013W	STP4	Q07351	490 aa		11.12	□□□□□ -0.63
DEP1	YAL013W	YOR097C	Q12274	175 aa	Predicted RBP	11.12	□□□□□ -0.63
DEP1	YAL013W	SRP21	P32342	167 aa		11.11	□□□□□ -0.63
DEP1	YAL013W	NNK1	P36003	928 aa		11.11	□□□□□ -0.63
DEP1	YAL013W	YKL075C	P36083	450 aa		11.11	□□□□□ -0.63
DEP1	YAL013W	MGA1	P53050	456 aa		11.11	□□□□□ -0.63
DEP1	YAL013W	HSP10	P38910	106 aa		11.1	□□□□□ -0.63
DEP1	YAL013W	YNL194C	P40169	301 aa		11.1	□□□□□ -0.63
DEP1	YAL013W	YIL163C	P40448	117 aa		11.1	□□□□□ -0.63
DEP1	YAL013W	ZEO1	Q08245	113 aa		11.1	□□□□□ -0.63
DEP1	YAL013W	RPB3	P16370	318 aa	Known RBP	11.09	□□□□□ -0.63
DEP1	YAL013W	YCR041W	P37265	110 aa		11.09	□□□□□ -0.63
DEP1	YAL013W	GTT1	P40582	234 aa		11.09	□□□□□ -0.63
DEP1	YAL013W	NSE4	P43124	402 aa		11.09	□□□□□ -0.63
DEP1	YAL013W	HIT1	P46973	164 aa		11.09	□□□□□ -0.63
DEP1	YAL013W	HOR7	Q05827	59 aa		11.09	□□□□□ -0.63
DEP1	YAL013W	ATX2	Q12067	313 aa		11.09	□□□□□ -0.63
DEP1	YAL013W	YOP1	Q12402	180 aa		11.09	□□□□□ -0.63

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