RNA–Protein interactions for RNA: YPR001W

CIT3, Transcript of Dual specificity mitochondrial citrate and methylcitrate synthase, yeast

Gene CIT3, Length 1,461 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CIT3	YPR001W	YPL225W	Q08971	146 aa	Known RBP	5	□□□□□ -1.61
CIT3	YPR001W	SPC3	Q12133	184 aa		5	□□□□□ -1.61
CIT3	YPR001W	YOR214C	Q12282	236 aa		5	□□□□□ -1.61
CIT3	YPR001W	TAD3	Q9URQ3	322 aa		5	□□□□□ -1.61
CIT3	YPR001W	YLR419W	Q06698	1435 aa	Known RBP	4.99	□□□□□ -1.61
CIT3	YPR001W	TIM9	O74700	87 aa		4.99	□□□□□ -1.61
CIT3	YPR001W	CPA1	P07258	411 aa	Known RBP	4.99	□□□□□ -1.61
CIT3	YPR001W	VTC1	P40046	129 aa	RIP-Chip data	4.99	□□□□□ -1.61	not detected
CIT3	YPR001W	DSK2	P48510	373 aa		4.99	□□□□□ -1.61
CIT3	YPR001W	YLR099W-A	Q3E798	87 aa		4.99	□□□□□ -1.61
CIT3	YPR001W	YAR023C	D6VPM8	179 aa		4.98	□□□□□ -1.61
CIT3	YPR001W	SMD1	Q02260	146 aa	Predicted RBP	4.98	□□□□□ -1.61
CIT3	YPR001W	MRPS16	Q02608	121 aa		4.98	□□□□□ -1.61
CIT3	YPR001W	YML122C	Q03207	126 aa		4.98	□□□□□ -1.61
CIT3	YPR001W	ODC2	Q99297	307 aa		4.98	□□□□□ -1.61
CIT3	YPR001W	SPT14	P32363	452 aa		4.97	□□□□□ -1.61
CIT3	YPR001W	YGL193C	P53097	103 aa		4.97	□□□□□ -1.61
CIT3	YPR001W	YMR099C	Q03161	297 aa	Known RBP	4.97	□□□□□ -1.61
CIT3	YPR001W	FCF1	Q05498	189 aa	Predicted RBP	4.97	□□□□□ -1.61
CIT3	YPR001W	FYV7	Q12247	151 aa		4.97	□□□□□ -1.61
CIT3	YPR001W	YNL277W-A	Q3E7Z0	62 aa		4.97	□□□□□ -1.61
CIT3	YPR001W	YPK9	Q12697	1472 aa		4.97	□□□□□ -1.61
CIT3	YPR001W	RAD10	P06838	210 aa		4.96	□□□□□ -1.62
CIT3	YPR001W	MRPL17	P36528	281 aa		4.96	□□□□□ -1.62
CIT3	YPR001W	MCH1	Q07376	486 aa		4.96	□□□□□ -1.62
CIT3	YPR001W	IES3	Q12345	250 aa		4.96	□□□□□ -1.62
CIT3	YPR001W	THO2	P53552	1597 aa	Known RBP	4.96	□□□□□ -1.62
CIT3	YPR001W	AUS1	Q08409	1394 aa		4.95	□□□□□ -1.62
CIT3	YPR001W	YCR101C	P25607	182 aa		4.95	□□□□□ -1.62
CIT3	YPR001W	TRS20	P38334	175 aa		4.95	□□□□□ -1.62
CIT3	YPR001W	FYV4	P38783	130 aa	Predicted RBP	4.95	□□□□□ -1.62
CIT3	YPR001W	YER188W	P40103	239 aa		4.95	□□□□□ -1.62
CIT3	YPR001W	YGR017W	P53210	297 aa		4.95	□□□□□ -1.62
CIT3	YPR001W	YDR274C	P87283	123 aa		4.95	□□□□□ -1.62
CIT3	YPR001W	BOL1	Q3E793	110 aa		4.95	□□□□□ -1.62
CIT3	YPR001W	IRC20	Q06554	1556 aa		4.95	□□□□□ -1.62
CIT3	YPR001W	NMT1	P14743	455 aa		4.94	□□□□□ -1.62
CIT3	YPR001W	HYM1	P32464	399 aa		4.94	□□□□□ -1.62
CIT3	YPR001W	SHB17	P36136	271 aa	Known RBP	4.94	□□□□□ -1.62
CIT3	YPR001W	YNL033W	P53964	284 aa		4.94	□□□□□ -1.62
CIT3	YPR001W	YNL019C	P53975	284 aa		4.94	□□□□□ -1.62
CIT3	YPR001W	YPR114W	Q06107	315 aa		4.94	□□□□□ -1.62
CIT3	YPR001W	PDR10	P51533	1564 aa		4.94	□□□□□ -1.62
CIT3	YPR001W	LHP1	P33399	275 aa	Known RBP	4.94	□□□□□ -1.62
CIT3	YPR001W	YBR220C	P38318	560 aa		4.94	□□□□□ -1.62
CIT3	YPR001W	YHR140W	P38842	239 aa		4.94	□□□□□ -1.62
CIT3	YPR001W	GVP36	P40531	326 aa	Known RBP	4.94	□□□□□ -1.62
CIT3	YPR001W	YJL218W	P40892	196 aa	Known RBP	4.94	□□□□□ -1.62
CIT3	YPR001W	ECO1	P43605	281 aa		4.94	□□□□□ -1.62
CIT3	YPR001W	AIF1	P52923	378 aa		4.94	□□□□□ -1.62
CIT3	YPR001W	YLR118C	Q12354	227 aa		4.94	□□□□□ -1.62
CIT3	YPR001W	PHO13	P19881	312 aa		4.93	□□□□□ -1.62
CIT3	YPR001W	SUI1	P32911	108 aa	Known RBP	4.93	□□□□□ -1.62
CIT3	YPR001W	SNC2	P33328	115 aa		4.93	□□□□□ -1.62
CIT3	YPR001W	YGR026W	P53217	278 aa		4.93	□□□□□ -1.62
CIT3	YPR001W	YDR391C	Q04170	232 aa		4.93	□□□□□ -1.62
CIT3	YPR001W	SCW10	Q04951	389 aa		4.93	□□□□□ -1.62
CIT3	YPR001W	YTH1	Q06102	208 aa	Predicted RBP	4.93	□□□□□ -1.62
CIT3	YPR001W	SMC4	Q12267	1418 aa		4.93	□□□□□ -1.62
CIT3	YPR001W	NUP170	P38181	1502 aa		4.92	□□□□□ -1.62
CIT3	YPR001W	NSP1	P14907	823 aa	Known RBP	4.92	□□□□□ -1.62
CIT3	YPR001W	YRA2	P36036	203 aa	Known RBP RIP-Chip data	4.92	□□□□□ -1.62	not detected
CIT3	YPR001W	HTD2	P38790	280 aa	Known RBP	4.92	□□□□□ -1.62
CIT3	YPR001W	AIM11	P87275	137 aa		4.92	□□□□□ -1.62
CIT3	YPR001W	GAL83	Q04739	417 aa		4.92	□□□□□ -1.62
CIT3	YPR001W	ATO3	Q12359	275 aa		4.92	□□□□□ -1.62
CIT3	YPR001W	SFT1	P43682	97 aa		4.91	□□□□□ -1.62
CIT3	YPR001W	YKR005C	Q02203	525 aa		4.91	□□□□□ -1.62
CIT3	YPR001W	VPS28	Q02767	242 aa		4.91	□□□□□ -1.62
CIT3	YPR001W	MRPS8	Q03799	155 aa		4.91	□□□□□ -1.62
CIT3	YPR001W	YMR230W-A	Q3E7B5	62 aa		4.91	□□□□□ -1.62
CIT3	YPR001W	RPS19A	P07280	144 aa	Known RBP	4.9	□□□□□ -1.62
CIT3	YPR001W	RPS19B	P07281	144 aa	Predicted RBP	4.9	□□□□□ -1.62
CIT3	YPR001W	UMP1	P38293	148 aa		4.9	□□□□□ -1.62
CIT3	YPR001W	NSA2	P40078	261 aa	Known RBP	4.9	□□□□□ -1.62
CIT3	YPR001W	YPI1	P43587	155 aa		4.9	□□□□□ -1.62
CIT3	YPR001W	YFR045W	P43617	309 aa		4.9	□□□□□ -1.62
CIT3	YPR001W	GON7	P46984	123 aa		4.9	□□□□□ -1.62
CIT3	YPR001W	BUD25	P85052	153 aa		4.9	□□□□□ -1.62
CIT3	YPR001W	AIM36	Q03798	255 aa		4.9	□□□□□ -1.62
CIT3	YPR001W	FYV12	Q08559	129 aa		4.9	□□□□□ -1.62
CIT3	YPR001W	YHR032W-A	P0C5N6	59 aa		4.89	□□□□□ -1.63
CIT3	YPR001W	AHT1	P29589	182 aa		4.89	□□□□□ -1.63
CIT3	YPR001W	YHL026C	P38740	315 aa		4.89	□□□□□ -1.63
CIT3	YPR001W	CTR2	P38865	189 aa		4.89	□□□□□ -1.63
CIT3	YPR001W	SBH1	P52870	82 aa		4.89	□□□□□ -1.63
CIT3	YPR001W	SAE3	P89114	91 aa		4.89	□□□□□ -1.63
CIT3	YPR001W	CWC27	Q02770	301 aa		4.89	□□□□□ -1.63
CIT3	YPR001W	YMR253C	Q04835	414 aa		4.89	□□□□□ -1.63
CIT3	YPR001W	SAS5	Q99314	248 aa		4.89	□□□□□ -1.63
CIT3	YPR001W	RAD6	P06104	172 aa		4.88	□□□□□ -1.63
CIT3	YPR001W	RPL14A	P36105	138 aa	Known RBP	4.88	□□□□□ -1.63
CIT3	YPR001W	RPL14B	P38754	138 aa	Known RBP	4.88	□□□□□ -1.63
CIT3	YPR001W	YGL260W	P53056	76 aa		4.88	□□□□□ -1.63
CIT3	YPR001W	EST3	Q03096	181 aa		4.88	□□□□□ -1.63
CIT3	YPR001W	TMA23	Q03525	211 aa		4.88	□□□□□ -1.63
CIT3	YPR001W	SYM1	Q06563	197 aa		4.88	□□□□□ -1.63
CIT3	YPR001W	TY1B-H	O13535	1793 aa		4.88	□□□□□ -1.63
CIT3	YPR001W	TRM3	Q07527	1436 aa		4.88	□□□□□ -1.63
CIT3	YPR001W	POR1	P04840	283 aa	Known RBP	4.88	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 70.3 ms