RNA–Protein interactions for RNA: YLR058C

SHM2, Transcript of Cytosolic serine hydroxymethyltransferase, yeastyeast

Gene SHM2, Length 1,410 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHM2YLR058C POS5Q06892 414 aa8.37□□□□□ -1.07
SHM2YLR058C ILV5P06168 395 aaKnown RBP8.36□□□□□ -1.07
SHM2YLR058C MSK1P32048 576 aa8.36□□□□□ -1.07
SHM2YLR058C YBL059WP34224 193 aa8.36□□□□□ -1.07
SHM2YLR058C SHG1P38337 142 aa8.36□□□□□ -1.07
SHM2YLR058C CAF16P43569 289 aa8.36□□□□□ -1.07
SHM2YLR058C QCR9P22289 66 aa8.35□□□□□ -1.07
SHM2YLR058C FPR2P32472 135 aa8.35□□□□□ -1.07
SHM2YLR058C SHB17P36136 271 aaKnown RBP8.35□□□□□ -1.07
SHM2YLR058C YBL071CP38185 102 aa8.35□□□□□ -1.07
SHM2YLR058C BOR1P53838 576 aa8.35□□□□□ -1.07
SHM2YLR058C ERV25P54837 211 aaKnown RBP8.35□□□□□ -1.07
SHM2YLR058C TMA23Q03525 211 aa8.35□□□□□ -1.07
SHM2YLR058C PAA1Q12447 191 aaKnown RBP8.35□□□□□ -1.07
SHM2YLR058C UTP20P35194 2493 aaKnown RBP8.34□□□□□ -1.07
SHM2YLR058C MRPL38P35996 138 aaPredicted RBP8.34□□□□□ -1.07
SHM2YLR058C YAR068WP39564 161 aa8.34□□□□□ -1.07
SHM2YLR058C BDH1P39714 382 aa8.34□□□□□ -1.07
SHM2YLR058C MIC27P50945 234 aa8.34□□□□□ -1.07
SHM2YLR058C YMR007WQ03675 126 aa8.34□□□□□ -1.07
SHM2YLR058C SHH3Q04487 196 aa8.34□□□□□ -1.07
SHM2YLR058C CTR3Q06686 241 aa8.34□□□□□ -1.07
SHM2YLR058C PBP4Q07362 185 aaKnown RBP8.34□□□□□ -1.07
SHM2YLR058C IRC23Q08416 157 aa8.34□□□□□ -1.07
SHM2YLR058C VMA9Q3E7B6 73 aa8.34□□□□□ -1.07
SHM2YLR058C YMR316C-AI2HB70 103 aa8.33□□□□□ -1.08
SHM2YLR058C PIS1P06197 220 aaKnown RBP8.33□□□□□ -1.08
SHM2YLR058C YPS1P32329 569 aa8.33□□□□□ -1.08
SHM2YLR058C PRS4P38063 326 aaPredicted RBP8.33□□□□□ -1.08
SHM2YLR058C TIF11P38912 153 aaKnown RBP8.33□□□□□ -1.08
SHM2YLR058C MCM22P47167 239 aa8.33□□□□□ -1.08
SHM2YLR058C YGR018CP53211 109 aa8.33□□□□□ -1.08
SHM2YLR058C YML122CQ03207 126 aa8.33□□□□□ -1.08
SHM2YLR058C AVO2Q04749 426 aa8.33□□□□□ -1.08
SHM2YLR058C SDO1Q07953 250 aaKnown RBP8.33□□□□□ -1.08
SHM2YLR058C YCR022CP25620 114 aa8.32□□□□□ -1.08
SHM2YLR058C INO2P26798 304 aa8.32□□□□□ -1.08
SHM2YLR058C DAL3P32459 195 aa8.32□□□□□ -1.08
SHM2YLR058C YCR041WP37265 110 aa8.32□□□□□ -1.08
SHM2YLR058C GNP1P48813 663 aa8.32□□□□□ -1.08
SHM2YLR058C RIB4P50861 169 aaPredicted RBP8.32□□□□□ -1.08
SHM2YLR058C DUG3P53871 357 aa8.32□□□□□ -1.08
SHM2YLR058C CDS1P38221 457 aa8.31□□□□□ -1.08
SHM2YLR058C CSH1P38287 376 aa8.31□□□□□ -1.08
SHM2YLR058C DER1P38307 211 aa8.31□□□□□ -1.08
SHM2YLR058C DOG2P38773 246 aa8.31□□□□□ -1.08
SHM2YLR058C DOG1P38774 246 aa8.31□□□□□ -1.08
SHM2YLR058C PTC7P38797 343 aa8.31□□□□□ -1.08
SHM2YLR058C SMD3P43321 101 aaKnown RBP8.31□□□□□ -1.08
SHM2YLR058C LST7P53237 242 aa8.31□□□□□ -1.08
SHM2YLR058C CAF40P53829 373 aa8.31□□□□□ -1.08
SHM2YLR058C SPG4Q04438 115 aa8.31□□□□□ -1.08
SHM2YLR058C RXT3Q07458 294 aa8.31□□□□□ -1.08
SHM2YLR058C YOR352WQ08816 343 aa8.31□□□□□ -1.08
SHM2YLR058C ECM25P32525 599 aa8.3□□□□□ -1.08
SHM2YLR058C SRB6P32570 121 aa8.3□□□□□ -1.08
SHM2YLR058C RPL14AP36105 138 aaKnown RBP8.3□□□□□ -1.08
SHM2YLR058C RPL14BP38754 138 aaKnown RBP8.3□□□□□ -1.08
SHM2YLR058C ISU1Q03020 165 aa8.3□□□□□ -1.08
SHM2YLR058C TY1A-DR3Q12441 440 aa8.3□□□□□ -1.08
SHM2YLR058C LDS1P31379 325 aa8.29□□□□□ -1.08
SHM2YLR058C RIB5P38145 238 aa8.29□□□□□ -1.08
SHM2YLR058C Q0142Q9ZZW4 58 aa8.29□□□□□ -1.08
SHM2YLR058C YKL075CP36083 450 aa8.29□□□□□ -1.08
SHM2YLR058C AVT5P38176 459 aa8.29□□□□□ -1.08
SHM2YLR058C RRT1P38192 103 aa8.29□□□□□ -1.08
SHM2YLR058C TAX4P47030 604 aa8.29□□□□□ -1.08
SHM2YLR058C MSA1Q08471 629 aa8.29□□□□□ -1.08
SHM2YLR058C SME1Q12330 94 aaPredicted RBP8.29□□□□□ -1.08
SHM2YLR058C DFR1P07807 211 aaKnown RBP RIP-Chip data8.28□□□□□ -1.08not detected
SHM2YLR058C ALK2P32789 676 aaPredicted RBP8.28□□□□□ -1.08
SHM2YLR058C SAS2P40963 338 aa8.28□□□□□ -1.08
SHM2YLR058C VPS55P47111 140 aa8.28□□□□□ -1.08
SHM2YLR058C YGR219WP53307 113 aa8.28□□□□□ -1.08
SHM2YLR058C PAU4P53427 120 aa8.28□□□□□ -1.08
SHM2YLR058C SWT21P53873 357 aaPredicted RBP8.28□□□□□ -1.08
SHM2YLR058C MOT3P54785 490 aaKnown RBP8.28□□□□□ -1.08
SHM2YLR058C CDC7P06243 507 aa8.27□□□□□ -1.09
SHM2YLR058C MRP2P10663 115 aaPredicted RBP8.27□□□□□ -1.09
SHM2YLR058C ATG27P46989 271 aa8.27□□□□□ -1.09
SHM2YLR058C CPD1P53314 239 aa8.27□□□□□ -1.09
SHM2YLR058C ATC1Q04005 294 aa8.27□□□□□ -1.09
SHM2YLR058C PET494P07390 489 aaPredicted RBP8.26□□□□□ -1.09
SHM2YLR058C HOR7Q05827 59 aa8.26□□□□□ -1.09
SHM2YLR058C ACP1P32463 125 aa8.25□□□□□ -1.09
SHM2YLR058C PET100P38958 111 aa8.25□□□□□ -1.09
SHM2YLR058C YIL024CP40543 189 aa8.25□□□□□ -1.09
SHM2YLR058C RTS2P40962 232 aa8.25□□□□□ -1.09
SHM2YLR058C LOC1P43586 204 aaPredicted RBP8.25□□□□□ -1.09
SHM2YLR058C DSK2P48510 373 aa8.25□□□□□ -1.09
SHM2YLR058C SDH7Q04401 133 aa8.25□□□□□ -1.09
SHM2YLR058C PAU1P0CE88 120 aa8.24□□□□□ -1.09
SHM2YLR058C PAU14P0CE89 120 aa8.24□□□□□ -1.09
SHM2YLR058C PAU6P0CE90 120 aa8.24□□□□□ -1.09
SHM2YLR058C PAU18P0CE91 120 aa8.24□□□□□ -1.09
SHM2YLR058C PAU8P0CE92 120 aa8.24□□□□□ -1.09
SHM2YLR058C PAU11P0CE93 120 aa8.24□□□□□ -1.09
SHM2YLR058C YNK1P36010 153 aaKnown RBP8.24□□□□□ -1.09
SHM2YLR058C PAU13P38725 120 aa8.24□□□□□ -1.09
SHM2YLR058C PAU10Q03050 120 aa8.24□□□□□ -1.09
Retrieved 100 of 5,963 RNA–protein pairs in 44.7 ms