RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	NVJ1	P38881	321 aa		3.52	□□□□□ -1.85
CAF16	YFL028C	YER084W	P40057	128 aa		3.52	□□□□□ -1.85
CAF16	YFL028C	PAU12	P53343	120 aa		3.52	□□□□□ -1.85
CAF16	YFL028C	DXO1	Q06349	442 aa		3.52	□□□□□ -1.85
CAF16	YFL028C	BPH1	P25356	2167 aa		3.52	□□□□□ -1.85
CAF16	YFL028C	YEL009C-A	A0A023PZF2	135 aa		3.51	□□□□□ -1.85
CAF16	YFL028C	COX9	P07255	59 aa		3.51	□□□□□ -1.85
CAF16	YFL028C	MID2	P36027	376 aa		3.51	□□□□□ -1.85
CAF16	YFL028C	PAU24	P38155	120 aa		3.51	□□□□□ -1.85
CAF16	YFL028C	TIR3	P40552	269 aa		3.51	□□□□□ -1.85
CAF16	YFL028C	CCC1	P47818	322 aa		3.51	□□□□□ -1.85
CAF16	YFL028C	RBL2	P48606	106 aa	Known RBP	3.51	□□□□□ -1.85
CAF16	YFL028C	RRP17	Q04031	235 aa	Predicted RBP	3.51	□□□□□ -1.85
CAF16	YFL028C	ATG5	Q12380	294 aa		3.51	□□□□□ -1.85
CAF16	YFL028C	COX5B	P00425	151 aa		3.5	□□□□□ -1.85
CAF16	YFL028C	MRPS28	P21771	286 aa		3.5	□□□□□ -1.85
CAF16	YFL028C	YMR144W	P40214	342 aa	Known RBP	3.5	□□□□□ -1.85
CAF16	YFL028C	YJL218W	P40892	196 aa	Known RBP	3.5	□□□□□ -1.85
CAF16	YFL028C	YAE1	P47118	141 aa	Predicted RBP	3.5	□□□□□ -1.85
CAF16	YFL028C	SIP18	P50263	79 aa		3.5	□□□□□ -1.85
CAF16	YFL028C	YMR166C	Q03829	368 aa		3.5	□□□□□ -1.85
CAF16	YFL028C	SPG4	Q04438	115 aa		3.5	□□□□□ -1.85
CAF16	YFL028C	FIT3	Q08907	204 aa		3.5	□□□□□ -1.85
CAF16	YFL028C	YLR099W-A	Q3E798	87 aa		3.5	□□□□□ -1.85
CAF16	YFL028C	SIR2	P06700	562 aa		3.49	□□□□□ -1.85
CAF16	YFL028C	ADK1	P07170	222 aa	Known RBP	3.49	□□□□□ -1.85
CAF16	YFL028C	RPL35A	P0CX84	120 aa	Known RBP	3.49	□□□□□ -1.85
CAF16	YFL028C	RPL35B	P0CX85	120 aa	Known RBP	3.49	□□□□□ -1.85
CAF16	YFL028C	CUP2	P15315	225 aa		3.49	□□□□□ -1.85
CAF16	YFL028C	AHC2	P25649	128 aa		3.49	□□□□□ -1.85
CAF16	YFL028C	CLG1	P35190	452 aa		3.49	□□□□□ -1.85
CAF16	YFL028C	YBR220C	P38318	560 aa		3.49	□□□□□ -1.85
CAF16	YFL028C	CUE1	P38428	203 aa		3.49	□□□□□ -1.85
CAF16	YFL028C	YHL044W	P38727	235 aa		3.49	□□□□□ -1.85
CAF16	YFL028C	YGL204C	P53089	101 aa		3.49	□□□□□ -1.85
CAF16	YFL028C	CGR1	P53188	120 aa		3.49	□□□□□ -1.85
CAF16	YFL028C	AAH1	P53909	347 aa		3.49	□□□□□ -1.85
CAF16	YFL028C	DIG2	Q03373	323 aa	Known RBP	3.49	□□□□□ -1.85
CAF16	YFL028C	YDR391C	Q04170	232 aa		3.49	□□□□□ -1.85
CAF16	YFL028C	GAL83	Q04739	417 aa		3.49	□□□□□ -1.85
CAF16	YFL028C	NMA1	Q06178	401 aa	Known RBP	3.49	□□□□□ -1.85
CAF16	YFL028C	QCR7	P00128	127 aa		3.48	□□□□□ -1.85
CAF16	YFL028C	DSF1	P0CX08	502 aa		3.48	□□□□□ -1.85
CAF16	YFL028C	YNR073C	P0CX09	502 aa		3.48	□□□□□ -1.85
CAF16	YFL028C	YMR31	P19955	123 aa		3.48	□□□□□ -1.85
CAF16	YFL028C	PAU2	P32612	120 aa		3.48	□□□□□ -1.85
CAF16	YFL028C	CLB6	P32943	380 aa		3.48	□□□□□ -1.85
CAF16	YFL028C	CBT1	P36038	271 aa	Predicted RBP	3.48	□□□□□ -1.85
CAF16	YFL028C	FMP23	P38231	175 aa		3.48	□□□□□ -1.85
CAF16	YFL028C	PRS3	P38689	320 aa	Known RBP	3.48	□□□□□ -1.85
CAF16	YFL028C	RTC3	P38804	111 aa	Predicted RBP	3.48	□□□□□ -1.85
CAF16	YFL028C	COX15	P40086	486 aa		3.48	□□□□□ -1.85
CAF16	YFL028C	DLS1	P40366	167 aa		3.48	□□□□□ -1.85
CAF16	YFL028C	FLX1	P40464	311 aa		3.48	□□□□□ -1.85
CAF16	YFL028C	DOC1	P53068	250 aa		3.48	□□□□□ -1.85
CAF16	YFL028C	HHT1	P61830	136 aa		3.48	□□□□□ -1.85
CAF16	YFL028C	HEM25	Q07534	307 aa		3.48	□□□□□ -1.85
CAF16	YFL028C	YPL264C	Q08980	353 aa		3.48	□□□□□ -1.85
CAF16	YFL028C	IES3	Q12345	250 aa		3.48	□□□□□ -1.85
CAF16	YFL028C	SGA1	P08019	549 aa		3.47	□□□□□ -1.85
CAF16	YFL028C	DPB2	P24482	689 aa	Predicted RBP	3.47	□□□□□ -1.85
CAF16	YFL028C	ERG24	P32462	438 aa	Known RBP	3.47	□□□□□ -1.85
CAF16	YFL028C	SFK1	P35735	353 aa		3.47	□□□□□ -1.85
CAF16	YFL028C	SSH1	P38353	490 aa	Known RBP	3.47	□□□□□ -1.85
CAF16	YFL028C	ERJ5	P43613	295 aa	Predicted RBP	3.47	□□□□□ -1.85
CAF16	YFL028C	YJL016W	P47072	561 aa		3.47	□□□□□ -1.85
CAF16	YFL028C	NIF3	P53081	288 aa		3.47	□□□□□ -1.85
CAF16	YFL028C	HST4	P53688	370 aa		3.47	□□□□□ -1.85
CAF16	YFL028C	NRK1	P53915	240 aa		3.47	□□□□□ -1.85
CAF16	YFL028C	SED1	Q01589	338 aa		3.47	□□□□□ -1.85
CAF16	YFL028C	YMR279C	Q03263	540 aa		3.47	□□□□□ -1.85
CAF16	YFL028C	YPS3	Q12303	508 aa		3.47	□□□□□ -1.85
CAF16	YFL028C	YBL008W-A	Q3E821	79 aa		3.47	□□□□□ -1.85
CAF16	YFL028C	URA2	P07259	2214 aa	Known RBP	3.47	□□□□□ -1.85
CAF16	YFL028C	HIS3	P06633	220 aa		3.46	□□□□□ -1.86
CAF16	YFL028C	RPS23A	P0CX29	145 aa	Known RBP	3.46	□□□□□ -1.86
CAF16	YFL028C	RPS23B	P0CX30	145 aa		3.46	□□□□□ -1.86
CAF16	YFL028C	RPL30	P14120	105 aa	Known RBP	3.46	□□□□□ -1.86
CAF16	YFL028C	TMA19	P35691	167 aa	Known RBP	3.46	□□□□□ -1.86
CAF16	YFL028C	RCN1	P36054	211 aa		3.46	□□□□□ -1.86
CAF16	YFL028C	SHE2	P36068	246 aa	Known RBP RIP-Chip data	3.46	□□□□□ -1.86	not detected
CAF16	YFL028C	ERG28	P40030	148 aa		3.46	□□□□□ -1.86
CAF16	YFL028C	YGL159W	P53110	370 aa		3.46	□□□□□ -1.86
CAF16	YFL028C	ATG41	Q12048	136 aa		3.46	□□□□□ -1.86
CAF16	YFL028C	UTP11	P34247	250 aa	Predicted RBP	3.45	□□□□□ -1.86
CAF16	YFL028C	ECM14	P38836	430 aa		3.45	□□□□□ -1.86
CAF16	YFL028C	YJL028W	P47062	111 aa		3.45	□□□□□ -1.86
CAF16	YFL028C	CWC23	P52868	283 aa	Predicted RBP	3.45	□□□□□ -1.86
CAF16	YFL028C	NSA1	P53136	463 aa	Predicted RBP	3.45	□□□□□ -1.86
CAF16	YFL028C	MRH4	P53166	561 aa		3.45	□□□□□ -1.86
CAF16	YFL028C	RSM27	P53305	110 aa		3.45	□□□□□ -1.86
CAF16	YFL028C	BUD25	P85052	153 aa		3.45	□□□□□ -1.86
CAF16	YFL028C	YDC1	Q02896	317 aa		3.45	□□□□□ -1.86
CAF16	YFL028C	GPI17	Q04080	534 aa		3.45	□□□□□ -1.86
CAF16	YFL028C	RFU1	Q08003	200 aa		3.45	□□□□□ -1.86
CAF16	YFL028C	USB1	Q12208	290 aa	Known RBP	3.45	□□□□□ -1.86
CAF16	YFL028C	YKL183C-A	Q3E765	70 aa		3.45	□□□□□ -1.86
CAF16	YFL028C	YBL112C	Q3E7Y4	105 aa		3.45	□□□□□ -1.86
CAF16	YFL028C	SUS1	Q6WNK7	96 aa		3.45	□□□□□ -1.86
CAF16	YFL028C	YBR121C-A	P0C5L4	52 aa		3.44	□□□□□ -1.86

Retrieved 100 of 5,963 RNA–protein pairs in 34.3 ms