RNA–Protein interactions for RNA: YMR067C

UBX4, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX4, Length 1,251 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX4	YMR067C	YIL177C	P40434	1758 aa		0.72	□□□□□ -2.29
UBX4	YMR067C	YJL225C	P40889	1758 aa		0.72	□□□□□ -2.29
UBX4	YMR067C	GEA1	P47102	1408 aa	Predicted RBP	0.72	□□□□□ -2.29
UBX4	YMR067C	GSC2	P40989	1895 aa		0.71	□□□□□ -2.3
UBX4	YMR067C	SIR2	P06700	562 aa		0.71	□□□□□ -2.3
UBX4	YMR067C	YHR212W-A	P0CX91	67 aa		0.71	□□□□□ -2.3
UBX4	YMR067C	URA6	P15700	204 aa		0.71	□□□□□ -2.3
UBX4	YMR067C	TDA8	Q6B2U8	126 aa		0.71	□□□□□ -2.3
UBX4	YMR067C	FAS1	P07149	2051 aa	Known RBP	0.71	□□□□□ -2.3
UBX4	YMR067C	RSF2	P46974	1380 aa		0.7	□□□□□ -2.3
UBX4	YMR067C	TCA17	P32613	152 aa		0.7	□□□□□ -2.3
UBX4	YMR067C	YER034W	P40022	185 aa	Known RBP	0.7	□□□□□ -2.3
UBX4	YMR067C	PRE6	P40303	254 aa	Known RBP	0.7	□□□□□ -2.3
UBX4	YMR067C	FMC1	P40491	155 aa		0.7	□□□□□ -2.3
UBX4	YMR067C	FAR7	P43592	221 aa		0.7	□□□□□ -2.3
UBX4	YMR067C	LIA1	P47120	325 aa	Known RBP	0.7	□□□□□ -2.3
UBX4	YMR067C	YNL134C	P53912	376 aa	Known RBP	0.7	□□□□□ -2.3
UBX4	YMR067C	SRB8	P25648	1427 aa		0.7	□□□□□ -2.3
UBX4	YMR067C	ROM2	P51862	1356 aa	Known RBP	0.7	□□□□□ -2.3
UBX4	YMR067C	CFT1	Q06632	1357 aa	Known RBP	0.7	□□□□□ -2.3
UBX4	YMR067C	URA5	P13298	226 aa	Known RBP	0.69	□□□□□ -2.3
UBX4	YMR067C	DBF2	P22204	572 aa		0.69	□□□□□ -2.3
UBX4	YMR067C	YUH1	P35127	236 aa		0.69	□□□□□ -2.3
UBX4	YMR067C	APS1	P35181	156 aa		0.69	□□□□□ -2.3
UBX4	YMR067C	LDB7	P38210	180 aa		0.69	□□□□□ -2.3
UBX4	YMR067C	RPC17	P47076	161 aa		0.69	□□□□□ -2.3
UBX4	YMR067C	YLR283W	Q05867	314 aa		0.69	□□□□□ -2.3
UBX4	YMR067C	RRT8	Q08219	342 aa		0.69	□□□□□ -2.3
UBX4	YMR067C	RAD28	Q12021	506 aa		0.69	□□□□□ -2.3
UBX4	YMR067C	UTP10	P42945	1769 aa	Known RBP	0.69	□□□□□ -2.3
UBX4	YMR067C	KRE5	P22023	1365 aa		0.69	□□□□□ -2.3
UBX4	YMR067C	HKR1	P41809	1802 aa		0.68	□□□□□ -2.3
UBX4	YMR067C	RAD9	P14737	1309 aa		0.68	□□□□□ -2.3
UBX4	YMR067C	TY3B-I	Q7LHG5	1498 aa	Known RBP	0.68	□□□□□ -2.3
UBX4	YMR067C	SSO1	P32867	290 aa		0.68	□□□□□ -2.3
UBX4	YMR067C	VMA22	P38784	181 aa		0.68	□□□□□ -2.3
UBX4	YMR067C	COX15	P40086	486 aa		0.68	□□□□□ -2.3
UBX4	YMR067C	FYV6	P53913	173 aa		0.68	□□□□□ -2.3
UBX4	YMR067C	LCL2	Q08045	131 aa		0.68	□□□□□ -2.3
UBX4	YMR067C	PMD1	P32634	1753 aa		0.68	□□□□□ -2.3
UBX4	YMR067C	FIG2	P25653	1609 aa		0.67	□□□□□ -2.3
UBX4	YMR067C	MDM35	O60200	86 aa		0.67	□□□□□ -2.3
UBX4	YMR067C	UTP30	P36144	274 aa	Known RBP	0.67	□□□□□ -2.3
UBX4	YMR067C	HYR1	P40581	163 aa	Known RBP	0.67	□□□□□ -2.3
UBX4	YMR067C	MIC26	P50087	233 aa		0.67	□□□□□ -2.3
UBX4	YMR067C	BRR6	P53062	197 aa		0.67	□□□□□ -2.3
UBX4	YMR067C	YDR249C	Q03787	373 aa		0.67	□□□□□ -2.3
UBX4	YMR067C	YOL160W	Q08321	113 aa		0.67	□□□□□ -2.3
UBX4	YMR067C	ECM29	P38737	1868 aa		0.67	□□□□□ -2.3
UBX4	YMR067C	NUM1	Q00402	2748 aa		0.66	□□□□□ -2.3
UBX4	YMR067C	CDC28	P00546	298 aa	Known RBP	0.66	□□□□□ -2.3
UBX4	YMR067C	BET1	P22804	142 aa		0.66	□□□□□ -2.3
UBX4	YMR067C	BXI1	P48558	297 aa		0.66	□□□□□ -2.3
UBX4	YMR067C	YPR117W	Q06116	2489 aa		0.65	□□□□□ -2.3
UBX4	YMR067C	MOT1	P32333	1867 aa		0.65	□□□□□ -2.3
UBX4	YMR067C	MLP1	Q02455	1875 aa	Known RBP	0.65	□□□□□ -2.3
UBX4	YMR067C	CUP1-1	P0CX80	61 aa		0.65	□□□□□ -2.31
UBX4	YMR067C	CUP1-2	P0CX81	61 aa		0.65	□□□□□ -2.31
UBX4	YMR067C	KSS1	P14681	368 aa		0.65	□□□□□ -2.31
UBX4	YMR067C	YFH7	P43591	353 aa		0.65	□□□□□ -2.31
UBX4	YMR067C	MYO1	P08964	1928 aa		0.64	□□□□□ -2.31
UBX4	YMR067C	CDC36	P06100	191 aa	Predicted RBP	0.64	□□□□□ -2.31
UBX4	YMR067C	IDH1	P28834	360 aa	Known RBP RIP-Chip data	0.64	□□□□□ -2.31	not detected
UBX4	YMR067C	ECM4	P36156	370 aa		0.64	□□□□□ -2.31
UBX4	YMR067C	YDR274C	P87283	123 aa		0.64	□□□□□ -2.31
UBX4	YMR067C	YMR252C	Q04814	134 aa		0.64	□□□□□ -2.31
UBX4	YMR067C	YLR419W	Q06698	1435 aa	Known RBP	0.64	□□□□□ -2.31
UBX4	YMR067C	TOM1	Q03280	3268 aa		0.63	□□□□□ -2.31
UBX4	YMR067C	TOR1	P35169	2470 aa		0.63	□□□□□ -2.31
UBX4	YMR067C	ADE6	P38972	1358 aa	Known RBP	0.63	□□□□□ -2.31
UBX4	YMR067C	RPL27A	P0C2H6	136 aa	Known RBP	0.63	□□□□□ -2.31
UBX4	YMR067C	RPB3	P16370	318 aa	Known RBP	0.63	□□□□□ -2.31
UBX4	YMR067C	AST2	P39945	430 aa	Known RBP	0.63	□□□□□ -2.31
UBX4	YMR067C	RMD6	P39975	231 aa		0.63	□□□□□ -2.31
UBX4	YMR067C	PET117	Q02771	107 aa		0.63	□□□□□ -2.31
UBX4	YMR067C	YPR174C	Q06616	221 aa	Predicted RBP	0.63	□□□□□ -2.31
UBX4	YMR067C	TAO3	P40468	2376 aa		0.62	□□□□□ -2.31
UBX4	YMR067C	RPO41	P13433	1351 aa	Known RBP	0.62	□□□□□ -2.31
UBX4	YMR067C	SEC4	P07560	215 aa	Known RBP	0.62	□□□□□ -2.31
UBX4	YMR067C	STP22	P25604	385 aa		0.62	□□□□□ -2.31
UBX4	YMR067C	YCR016W	P25617	290 aa	Known RBP	0.62	□□□□□ -2.31
UBX4	YMR067C	YGR050C	P53231	118 aa		0.62	□□□□□ -2.31
UBX4	YMR067C	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	0.62	□□□□□ -2.31	not detected
UBX4	YMR067C	YRA1	Q12159	226 aa	Known RBP	0.62	□□□□□ -2.31
UBX4	YMR067C	YDR034W-B	Q6Q5X2	51 aa		0.62	□□□□□ -2.31
UBX4	YMR067C	FLO1	P32768	1537 aa		0.62	□□□□□ -2.31
UBX4	YMR067C	DUR1,2	P32528	1835 aa	Known RBP	0.61	□□□□□ -2.31
UBX4	YMR067C	LAA1	P39526	2014 aa		0.61	□□□□□ -2.31
UBX4	YMR067C	ATP15	P21306	62 aa		0.61	□□□□□ -2.31
UBX4	YMR067C	PTM1	P32857	523 aa		0.61	□□□□□ -2.31
UBX4	YMR067C	HPA3	P39979	161 aa		0.61	□□□□□ -2.31
UBX4	YMR067C	YEA4	P40004	342 aa		0.61	□□□□□ -2.31
UBX4	YMR067C	RIF1	P29539	1916 aa		0.61	□□□□□ -2.31
UBX4	YMR067C	VPS13	Q07878	3144 aa		0.61	□□□□□ -2.31
UBX4	YMR067C	LYS2	P07702	1392 aa		0.6	□□□□□ -2.31
UBX4	YMR067C	RPL40A	P0CH08	128 aa	Known RBP	0.6	□□□□□ -2.31
UBX4	YMR067C	RPL40B	P0CH09	128 aa	Known RBP	0.6	□□□□□ -2.31
UBX4	YMR067C	RPS24A	P0CX31	135 aa	Known RBP	0.6	□□□□□ -2.31
UBX4	YMR067C	RPS24B	P0CX32	135 aa	Known RBP	0.6	□□□□□ -2.31
UBX4	YMR067C	MAG1	P22134	296 aa	Known RBP	0.6	□□□□□ -2.31

Retrieved 100 of 5,963 RNA–protein pairs in 129.4 ms