RNA–Protein interactions for RNA: YML029W

USA1, Transcript of Scaffold subunit of the Hrd1p ubiquitin ligase, yeast

Gene USA1, Length 2,517 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
USA1	YML029W	YER188W	P40103	239 aa		3.21	□□□□□ -1.9
USA1	YML029W	AGE2	P40529	298 aa		3.21	□□□□□ -1.9
USA1	YML029W	PIR5	P46999	287 aa		3.21	□□□□□ -1.9
USA1	YML029W	YPL108W	Q02872	168 aa	Predicted RBP	3.21	□□□□□ -1.9
USA1	YML029W	LPP1	Q04396	274 aa		3.21	□□□□□ -1.9
USA1	YML029W	YPD1	Q07688	167 aa		3.21	□□□□□ -1.9
USA1	YML029W	YOL118C	Q08259	102 aa		3.21	□□□□□ -1.9
USA1	YML029W	RAD28	Q12021	506 aa		3.21	□□□□□ -1.9
USA1	YML029W	YCT1	Q12235	531 aa		3.21	□□□□□ -1.9
USA1	YML029W	TDH1	P00360	332 aa	Known RBP	3.21	□□□□□ -1.9
USA1	YML029W	TOM40	P23644	387 aa	Known RBP	3.21	□□□□□ -1.9
USA1	YML029W	ROX3	P25046	220 aa		3.21	□□□□□ -1.9
USA1	YML029W	HMX1	P32339	317 aa		3.21	□□□□□ -1.9
USA1	YML029W	PHM8	P40025	321 aa		3.21	□□□□□ -1.9
USA1	YML029W	YIR035C	P40579	254 aa		3.21	□□□□□ -1.9
USA1	YML029W	YIP1	P53039	248 aa		3.21	□□□□□ -1.9
USA1	YML029W	ORM1	P53224	222 aa		3.21	□□□□□ -1.9
USA1	YML029W	MIX17	Q03667	156 aa		3.21	□□□□□ -1.9
USA1	YML029W	TSA2	Q04120	196 aa		3.21	□□□□□ -1.9
USA1	YML029W	RIM9	Q04734	239 aa		3.21	□□□□□ -1.9
USA1	YML029W	RFM1	Q12192	310 aa		3.21	□□□□□ -1.9
USA1	YML029W	TFC7	Q12415	435 aa		3.21	□□□□□ -1.9
USA1	YML029W	YGL194C-A	Q2V2P6	80 aa		3.21	□□□□□ -1.9
USA1	YML029W	HUG1	Q6Q5K6	68 aa		3.21	□□□□□ -1.9
USA1	YML029W	TRP4	P07285	380 aa	Predicted RBP	3.2	□□□□□ -1.9
USA1	YML029W	MAG1	P22134	296 aa	Known RBP	3.2	□□□□□ -1.9
USA1	YML029W	SEC22	P22214	214 aa		3.2	□□□□□ -1.9
USA1	YML029W	FPR2	P32472	135 aa		3.2	□□□□□ -1.9
USA1	YML029W	ERG25	P53045	309 aa		3.2	□□□□□ -1.9
USA1	YML029W	SSU72	P53538	206 aa	Predicted RBP	3.2	□□□□□ -1.9
USA1	YML029W	SDO1	Q07953	250 aa	Known RBP	3.2	□□□□□ -1.9
USA1	YML029W	YBR298C-A	Q8TGK4	73 aa		3.2	□□□□□ -1.9
USA1	YML029W	YBR126W-A	Q8TGU7	68 aa		3.2	□□□□□ -1.9
USA1	YML029W	YDR157W	A0A023PZE8	133 aa		3.2	□□□□□ -1.9
USA1	YML029W	FRS1	P15624	595 aa	Known RBP	3.2	□□□□□ -1.9
USA1	YML029W	TIP1	P27654	210 aa	Predicted RBP	3.2	□□□□□ -1.9
USA1	YML029W	VMA11	P32842	164 aa		3.2	□□□□□ -1.9
USA1	YML029W	ERV15	P38312	142 aa		3.2	□□□□□ -1.9
USA1	YML029W	CTR2	P38865	189 aa		3.2	□□□□□ -1.9
USA1	YML029W	HAM1	P47119	197 aa	Known RBP	3.2	□□□□□ -1.9
USA1	YML029W	VPS28	Q02767	242 aa		3.2	□□□□□ -1.9
USA1	YML029W	MRPS17	Q03246	237 aa	Predicted RBP	3.2	□□□□□ -1.9
USA1	YML029W	NDE2	Q07500	545 aa		3.2	□□□□□ -1.9
USA1	YML029W	SWT1	Q12104	458 aa		3.2	□□□□□ -1.9
USA1	YML029W	YJR112W-A	Q3E743	109 aa		3.2	□□□□□ -1.9
USA1	YML029W	ILV5	P06168	395 aa	Known RBP	3.19	□□□□□ -1.9
USA1	YML029W	PDC2	P32896	925 aa		3.19	□□□□□ -1.9
USA1	YML029W	TAD2	P47058	250 aa		3.19	□□□□□ -1.9
USA1	YML029W	YJR111C	P47148	283 aa	Known RBP	3.19	□□□□□ -1.9
USA1	YML029W	RPL9B	P51401	191 aa	Known RBP	3.19	□□□□□ -1.9
USA1	YML029W	PNC1	P53184	216 aa	Known RBP	3.19	□□□□□ -1.9
USA1	YML029W	JAC1	P53193	184 aa		3.19	□□□□□ -1.9
USA1	YML029W	ACT1	P60010	375 aa	Known RBP	3.19	□□□□□ -1.9
USA1	YML029W	ANT1	Q06497	328 aa		3.19	□□□□□ -1.9
USA1	YML029W	RRT7	Q07829	113 aa		3.19	□□□□□ -1.9
USA1	YML029W	YOR029W	Q12243	111 aa		3.19	□□□□□ -1.9
USA1	YML029W	RPL9A	P05738	191 aa	Known RBP	3.19	□□□□□ -1.9
USA1	YML029W	PMU1	P36069	295 aa		3.19	□□□□□ -1.9
USA1	YML029W	YKL075C	P36083	450 aa		3.19	□□□□□ -1.9
USA1	YML029W	PRY2	P36110	329 aa		3.19	□□□□□ -1.9
USA1	YML029W	ATP3	P38077	311 aa	Known RBP	3.19	□□□□□ -1.9
USA1	YML029W	SYG1	P40528	902 aa		3.19	□□□□□ -1.9
USA1	YML029W	TIM21	P53220	239 aa		3.19	□□□□□ -1.9
USA1	YML029W	GPI15	P53961	229 aa		3.19	□□□□□ -1.9
USA1	YML029W	YPS3	Q12303	508 aa		3.19	□□□□□ -1.9
USA1	YML029W	FMP16	Q12497	93 aa		3.19	□□□□□ -1.9
USA1	YML029W	YGL258W-A	Q3E740	77 aa		3.19	□□□□□ -1.9
USA1	YML029W	FEN2	P25621	512 aa	Known RBP	3.18	□□□□□ -1.9
USA1	YML029W	SSO2	P39926	295 aa		3.18	□□□□□ -1.9
USA1	YML029W	YJR012C	P47087	207 aa		3.18	□□□□□ -1.9
USA1	YML029W	YGL262W	P53054	175 aa		3.18	□□□□□ -1.9
USA1	YML029W	CWC25	P53854	179 aa	Known RBP	3.18	□□□□□ -1.9
USA1	YML029W	YFH1	Q07540	174 aa		3.18	□□□□□ -1.9
USA1	YML029W	RKI1	Q12189	258 aa		3.18	□□□□□ -1.9
USA1	YML029W	YLR146W-A	Q2V2P1	62 aa		3.18	□□□□□ -1.9
USA1	YML029W	VMA7	P39111	118 aa		3.18	□□□□□ -1.9
USA1	YML029W	YEA6	P39953	335 aa		3.18	□□□□□ -1.9
USA1	YML029W	RTS2	P40962	232 aa		3.18	□□□□□ -1.9
USA1	YML029W	YJL163C	P46996	555 aa		3.18	□□□□□ -1.9
USA1	YML029W	YJR056C	P47115	236 aa		3.18	□□□□□ -1.9
USA1	YML029W	WSC2	P53832	503 aa		3.18	□□□□□ -1.9
USA1	YML029W	YIF1	P53845	314 aa	Known RBP	3.18	□□□□□ -1.9
USA1	YML029W	DID2	P69771	204 aa		3.18	□□□□□ -1.9
USA1	YML029W	ERP1	Q05359	219 aa	Known RBP	3.18	□□□□□ -1.9
USA1	YML029W	AEP3	Q12089	606 aa		3.18	□□□□□ -1.9
USA1	YML029W	YLR302C	O13544	120 aa		3.17	□□□□□ -1.9
USA1	YML029W	EMP24	P32803	203 aa	Known RBP	3.17	□□□□□ -1.9
USA1	YML029W	CUE1	P38428	203 aa		3.17	□□□□□ -1.9
USA1	YML029W	LSM12	P38828	187 aa	Known RBP	3.17	□□□□□ -1.9
USA1	YML029W	ASP1	P38986	381 aa	Predicted RBP	3.17	□□□□□ -1.9
USA1	YML029W	GCV3	P39726	170 aa	Predicted RBP	3.17	□□□□□ -1.9
USA1	YML029W	PKP2	P53170	491 aa		3.17	□□□□□ -1.9
USA1	YML029W	MSO1	P53604	210 aa	Known RBP	3.17	□□□□□ -1.9
USA1	YML029W	EST3	Q03096	181 aa		3.17	□□□□□ -1.9
USA1	YML029W	RAX2	Q12465	1220 aa		3.17	□□□□□ -1.9
USA1	YML029W	CCW14	O13547	238 aa		3.17	□□□□□ -1.9
USA1	YML029W	MRS4	P23500	304 aa		3.17	□□□□□ -1.9
USA1	YML029W	RAD23	P32628	398 aa	Known RBP	3.17	□□□□□ -1.9
USA1	YML029W	SLM6	P38343	150 aa		3.17	□□□□□ -1.9
USA1	YML029W	YFL015C	P43578	164 aa		3.17	□□□□□ -1.9

Retrieved 100 of 5,963 RNA–protein pairs in 24.3 ms