RNA–Protein interactions for RNA: YJL154C

VPS35, Transcript of Endosomal subunit of membrane-associated retromer complex, yeastyeast

Gene VPS35, Length 2,835 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS35YJL154C JEN1P36035 616 aa1.52□□□□□ -2.17
VPS35YJL154C TRM7P38238 310 aaKnown RBP1.52□□□□□ -2.17
VPS35YJL154C ATG12P38316 186 aa1.52□□□□□ -2.17
VPS35YJL154C YHL044WP38727 235 aa1.52□□□□□ -2.17
VPS35YJL154C IPI1P38803 334 aaPredicted RBP1.52□□□□□ -2.17
VPS35YJL154C ECM14P38836 430 aa1.52□□□□□ -2.17
VPS35YJL154C ILM1P47155 203 aa1.52□□□□□ -2.17
VPS35YJL154C RBL2P48606 106 aaKnown RBP1.52□□□□□ -2.17
VPS35YJL154C UFD1P53044 361 aa1.52□□□□□ -2.17
VPS35YJL154C USE1P53146 245 aa1.52□□□□□ -2.17
VPS35YJL154C MAL13P53338 473 aa1.52□□□□□ -2.17
VPS35YJL154C PDR17P53844 350 aa1.52□□□□□ -2.17
VPS35YJL154C ACT1P60010 375 aaKnown RBP1.52□□□□□ -2.17
VPS35YJL154C PKR1Q03880 122 aaKnown RBP1.52□□□□□ -2.17
VPS35YJL154C SME1Q12330 94 aaPredicted RBP1.52□□□□□ -2.17
VPS35YJL154C YPL119C-AQ3E751 87 aa1.52□□□□□ -2.17
VPS35YJL154C PMD1P32634 1753 aa1.51□□□□□ -2.17
VPS35YJL154C BCY1P07278 416 aaKnown RBP1.51□□□□□ -2.17
VPS35YJL154C PET9P18239 318 aaKnown RBP1.51□□□□□ -2.17
VPS35YJL154C PRE7P23724 241 aaKnown RBP1.51□□□□□ -2.17
VPS35YJL154C RSA4P25382 515 aaKnown RBP1.51□□□□□ -2.17
VPS35YJL154C TFC1P32367 649 aa1.51□□□□□ -2.17
VPS35YJL154C MRPL28P36527 147 aa1.51□□□□□ -2.17
VPS35YJL154C YBL081WP38180 368 aaKnown RBP1.51□□□□□ -2.17
VPS35YJL154C POP4P38336 279 aa1.51□□□□□ -2.17
VPS35YJL154C PGD1P40356 397 aa1.51□□□□□ -2.17
VPS35YJL154C GLC8P41818 229 aa1.51□□□□□ -2.17
VPS35YJL154C SYF2P53277 215 aaPredicted RBP1.51□□□□□ -2.17
VPS35YJL154C ASI3P53983 676 aa1.51□□□□□ -2.17
VPS35YJL154C SAE3P89114 91 aa1.51□□□□□ -2.17
VPS35YJL154C UBC7Q02159 165 aa1.51□□□□□ -2.17
VPS35YJL154C SWP1Q02795 286 aa1.51□□□□□ -2.17
VPS35YJL154C TVP15Q03860 143 aa1.51□□□□□ -2.17
VPS35YJL154C YMR320WQ04897 101 aa1.51□□□□□ -2.17
VPS35YJL154C SLD7Q08457 257 aa1.51□□□□□ -2.17
VPS35YJL154C PST2Q12335 198 aaKnown RBP1.51□□□□□ -2.17
VPS35YJL154C NSP1P14907 823 aaKnown RBP1.51□□□□□ -2.17
VPS35YJL154C TAH1P25638 111 aaPredicted RBP1.51□□□□□ -2.17
VPS35YJL154C ATG15P25641 520 aa1.51□□□□□ -2.17
VPS35YJL154C TRM9P49957 279 aa1.51□□□□□ -2.17
VPS35YJL154C DID2P69771 204 aa1.51□□□□□ -2.17
VPS35YJL154C HSK3P69852 69 aa1.51□□□□□ -2.17
VPS35YJL154C YDR249CQ03787 373 aa1.51□□□□□ -2.17
VPS35YJL154C ZEO1Q08245 113 aa1.51□□□□□ -2.17
VPS35YJL154C ISD11Q6Q560 94 aa1.51□□□□□ -2.17
VPS35YJL154C CCH1P50077 2039 aa1.51□□□□□ -2.17
VPS35YJL154C CDC7P06243 507 aa1.5□□□□□ -2.17
VPS35YJL154C MRPS28P21771 286 aa1.5□□□□□ -2.17
VPS35YJL154C OCH1P31755 480 aa1.5□□□□□ -2.17
VPS35YJL154C ECM33P38248 429 aaKnown RBP1.5□□□□□ -2.17
VPS35YJL154C SLM6P38343 150 aa1.5□□□□□ -2.17
VPS35YJL154C FMP41P53889 259 aaKnown RBP1.5□□□□□ -2.17
VPS35YJL154C RHO3Q00245 231 aaKnown RBP1.5□□□□□ -2.17
VPS35YJL154C OSH6Q02201 448 aa1.5□□□□□ -2.17
VPS35YJL154C HNT1Q04344 158 aaKnown RBP1.5□□□□□ -2.17
VPS35YJL154C SDH7Q04401 133 aa1.5□□□□□ -2.17
VPS35YJL154C HEM25Q07534 307 aa1.5□□□□□ -2.17
VPS35YJL154C YOR214CQ12282 236 aa1.5□□□□□ -2.17
VPS35YJL154C PST1Q12355 444 aa1.5□□□□□ -2.17
VPS35YJL154C SLO1Q3E784 85 aa1.5□□□□□ -2.17
VPS35YJL154C GPA2P10823 449 aa1.5□□□□□ -2.17
VPS35YJL154C FCY2P17064 533 aa1.5□□□□□ -2.17
VPS35YJL154C SCO1P23833 295 aa1.5□□□□□ -2.17
VPS35YJL154C BUB2P26448 306 aaPredicted RBP1.5□□□□□ -2.17
VPS35YJL154C HYM1P32464 399 aa1.5□□□□□ -2.17
VPS35YJL154C SRY1P36007 326 aa1.5□□□□□ -2.17
VPS35YJL154C YBR220CP38318 560 aa1.5□□□□□ -2.17
VPS35YJL154C YGP1P38616 354 aaKnown RBP1.5□□□□□ -2.17
VPS35YJL154C FAR7P43592 221 aa1.5□□□□□ -2.17
VPS35YJL154C SNU23Q12368 194 aaPredicted RBP1.5□□□□□ -2.17
VPS35YJL154C RPL25P04456 142 aaKnown RBP1.49□□□□□ -2.17
VPS35YJL154C CMD1P06787 147 aaKnown RBP1.49□□□□□ -2.17
VPS35YJL154C MRS1P07266 363 aa1.49□□□□□ -2.17
VPS35YJL154C PPH21P23594 369 aa1.49□□□□□ -2.17
VPS35YJL154C PRY2P36110 329 aa1.49□□□□□ -2.17
VPS35YJL154C SPL2P38839 148 aa1.49□□□□□ -2.17
VPS35YJL154C YMR144WP40214 342 aaKnown RBP1.49□□□□□ -2.17
VPS35YJL154C SER33P40510 469 aa1.49□□□□□ -2.17
VPS35YJL154C YFR045WP43617 309 aa1.49□□□□□ -2.17
VPS35YJL154C TOS8P53147 276 aa1.49□□□□□ -2.17
VPS35YJL154C MAK3Q03503 176 aa1.49□□□□□ -2.17
VPS35YJL154C YDR391CQ04170 232 aa1.49□□□□□ -2.17
VPS35YJL154C PRP11Q07350 266 aaPredicted RBP1.49□□□□□ -2.17
VPS35YJL154C HRD1Q08109 551 aa1.49□□□□□ -2.17
VPS35YJL154C YOL024WQ08172 172 aa1.49□□□□□ -2.17
VPS35YJL154C RRS1Q08746 203 aaKnown RBP1.49□□□□□ -2.17
VPS35YJL154C PSF1Q12488 208 aa1.49□□□□□ -2.17
VPS35YJL154C RPS23AP0CX29 145 aaKnown RBP1.49□□□□□ -2.17
VPS35YJL154C RPS23BP0CX30 145 aa1.49□□□□□ -2.17
VPS35YJL154C SFK1P35735 353 aa1.49□□□□□ -2.17
VPS35YJL154C MRPL24P36525 258 aaPredicted RBP1.49□□□□□ -2.17
VPS35YJL154C YBR285WP38354 144 aa1.49□□□□□ -2.17
VPS35YJL154C ARN2P38724 620 aa1.49□□□□□ -2.17
VPS35YJL154C VMA7P39111 118 aa1.49□□□□□ -2.17
VPS35YJL154C LSM4P40070 187 aaKnown RBP1.49□□□□□ -2.17
VPS35YJL154C RFC2P40348 353 aa1.49□□□□□ -2.17
VPS35YJL154C MCM22P47167 239 aa1.49□□□□□ -2.17
VPS35YJL154C UBC12P52491 188 aa1.49□□□□□ -2.17
VPS35YJL154C PRM8P53174 237 aa1.49□□□□□ -2.17
VPS35YJL154C YGR017WP53210 297 aa1.49□□□□□ -2.17
Retrieved 100 of 5,963 RNA–protein pairs in 20.8 ms