RNA–Protein interactions for RNA: YPR110C

RPC40, Transcript of RNA polymerase subunit AC40, yeast

Gene RPC40, Length 1,008 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPC40	YPR110C	NTH2	P35172	780 aa		4.94	□□□□□ -1.62
RPC40	YPR110C	YBL086C	P38177	466 aa		4.94	□□□□□ -1.62
RPC40	YPR110C	SEN54	Q02825	467 aa	Predicted RBP	4.94	□□□□□ -1.62
RPC40	YPR110C	UTR2	P32623	467 aa		4.93	□□□□□ -1.62
RPC40	YPR110C	TRS33	Q99394	268 aa		4.93	□□□□□ -1.62
RPC40	YPR110C	RPP2B	P02400	110 aa	Known RBP	4.92	□□□□□ -1.62
RPC40	YPR110C	SWI5	P08153	709 aa		4.92	□□□□□ -1.62
RPC40	YPR110C	TRL1	P09880	827 aa	Known RBP	4.92	□□□□□ -1.62
RPC40	YPR110C	RPS6A	P0CX37	236 aa	Known RBP	4.92	□□□□□ -1.62
RPC40	YPR110C	RPS6B	P0CX38	236 aa	Predicted RBP	4.92	□□□□□ -1.62
RPC40	YPR110C	SUV3	P32580	737 aa		4.92	□□□□□ -1.62
RPC40	YPR110C	NGR1	P32831	672 aa	Known RBP	4.92	□□□□□ -1.62
RPC40	YPR110C	PNP1	Q05788	311 aa		4.92	□□□□□ -1.62
RPC40	YPR110C	PUN1	Q06991	263 aa		4.92	□□□□□ -1.62
RPC40	YPR110C	CYT1	P07143	309 aa		4.91	□□□□□ -1.62
RPC40	YPR110C	STM1	P39015	273 aa	Known RBP	4.91	□□□□□ -1.62
RPC40	YPR110C	KAR5	Q04746	504 aa		4.91	□□□□□ -1.62
RPC40	YPR110C	WTM2	Q12206	467 aa		4.91	□□□□□ -1.62
RPC40	YPR110C	YBL113C	Q7M4S9	792 aa		4.91	□□□□□ -1.62
RPC40	YPR110C	HEM3	P28789	327 aa		4.9	□□□□□ -1.63
RPC40	YPR110C	TBS1	P38114	1094 aa		4.9	□□□□□ -1.63
RPC40	YPR110C	ERP5	P38819	212 aa		4.9	□□□□□ -1.63
RPC40	YPR110C	DFG5	Q05031	458 aa		4.9	□□□□□ -1.63
RPC40	YPR110C	DAT1	P13483	248 aa	Known RBP	4.89	□□□□□ -1.63
RPC40	YPR110C	BOL3	P39724	118 aa		4.89	□□□□□ -1.63
RPC40	YPR110C	MDJ2	P42834	146 aa		4.89	□□□□□ -1.63
RPC40	YPR110C	ALD4	P46367	519 aa	Known RBP	4.89	□□□□□ -1.63
RPC40	YPR110C	MSB3	P48566	633 aa	Predicted RBP	4.89	□□□□□ -1.63
RPC40	YPR110C	CWH41	P53008	833 aa		4.89	□□□□□ -1.63
RPC40	YPR110C	ATG1	P53104	897 aa		4.89	□□□□□ -1.63
RPC40	YPR110C	LSO1	Q3E827	93 aa		4.89	□□□□□ -1.63
RPC40	YPR110C	MCM1	P11746	286 aa		4.88	□□□□□ -1.63
RPC40	YPR110C	PTK2	P47116	818 aa	Known RBP	4.88	□□□□□ -1.63
RPC40	YPR110C	ACF4	P47129	309 aa		4.88	□□□□□ -1.63
RPC40	YPR110C	YPQ2	Q06328	317 aa		4.88	□□□□□ -1.63
RPC40	YPR110C	BDS1	Q08347	646 aa		4.88	□□□□□ -1.63
RPC40	YPR110C	FUR4	P05316	633 aa	Known RBP	4.87	□□□□□ -1.63
RPC40	YPR110C	UGA3	P26370	528 aa		4.87	□□□□□ -1.63
RPC40	YPR110C	SEC20	P28791	383 aa		4.87	□□□□□ -1.63
RPC40	YPR110C	RRN6	P32786	894 aa		4.87	□□□□□ -1.63
RPC40	YPR110C	CAF120	P53836	1060 aa		4.87	□□□□□ -1.63
RPC40	YPR110C	MSC6	Q08818	692 aa	Known RBP	4.87	□□□□□ -1.63
RPC40	YPR110C	SUM1	P46676	1062 aa		4.86	□□□□□ -1.63
RPC40	YPR110C	OPT2	Q06593	877 aa		4.86	□□□□□ -1.63
RPC40	YPR110C	YBR197C	P38306	217 aa		4.85	□□□□□ -1.63
RPC40	YPR110C	APC11	Q12157	165 aa		4.85	□□□□□ -1.63
RPC40	YPR110C	BOI1	P38041	980 aa	Known RBP	4.84	□□□□□ -1.63
RPC40	YPR110C	GRS1	P38088	690 aa	Known RBP	4.84	□□□□□ -1.63
RPC40	YPR110C	HXT5	P38695	592 aa		4.84	□□□□□ -1.63
RPC40	YPR110C	PPX1	P38698	397 aa		4.84	□□□□□ -1.63
RPC40	YPR110C	DLD3	P39976	496 aa	Known RBP	4.84	□□□□□ -1.63
RPC40	YPR110C	QDR1	P40475	563 aa		4.84	□□□□□ -1.63
RPC40	YPR110C	CAB1	Q04430	367 aa		4.84	□□□□□ -1.63
RPC40	YPR110C	YHL050C	P38721	697 aa		4.83	□□□□□ -1.64
RPC40	YPR110C	YHR219W	P38900	624 aa		4.83	□□□□□ -1.64
RPC40	YPR110C	IPL1	P38991	367 aa		4.83	□□□□□ -1.64
RPC40	YPR110C	ISC10	P32645	267 aa		4.82	□□□□□ -1.64
RPC40	YPR110C	SCD5	P34758	872 aa		4.82	□□□□□ -1.64
RPC40	YPR110C	GLO3	P38682	493 aa	Known RBP	4.82	□□□□□ -1.64
RPC40	YPR110C	UTP7	P40055	554 aa	Known RBP	4.82	□□□□□ -1.64
RPC40	YPR110C	SPR3	P41901	512 aa		4.82	□□□□□ -1.64
RPC40	YPR110C	SRF1	Q12516	437 aa		4.82	□□□□□ -1.64
RPC40	YPR110C	ARG82	P07250	355 aa		4.81	□□□□□ -1.64
RPC40	YPR110C	ASF1	P32447	279 aa		4.81	□□□□□ -1.64
RPC40	YPR110C	SSN3	P39073	555 aa		4.81	□□□□□ -1.64
RPC40	YPR110C	ACO2	P39533	789 aa		4.81	□□□□□ -1.64
RPC40	YPR110C	AAD14	P42884	376 aa		4.81	□□□□□ -1.64
RPC40	YPR110C	NUT2	Q06213	157 aa		4.81	□□□□□ -1.64
RPC40	YPR110C	UTP4	Q06679	776 aa	Known RBP	4.81	□□□□□ -1.64
RPC40	YPR110C	MRPL33	P20084	86 aa		4.8	□□□□□ -1.64
RPC40	YPR110C	YIR007W	P40566	764 aa		4.8	□□□□□ -1.64
RPC40	YPR110C	MSN5	P52918	1224 aa		4.8	□□□□□ -1.64
RPC40	YPR110C	RRP15	Q06511	250 aa	Predicted RBP	4.8	□□□□□ -1.64
RPC40	YPR110C	SNU71	P53207	620 aa	Known RBP	4.79	□□□□□ -1.64
RPC40	YPR110C	TRS120	Q04183	1289 aa		4.79	□□□□□ -1.64
RPC40	YPR110C	WHI5	Q12416	295 aa		4.79	□□□□□ -1.64
RPC40	YPR110C	FRT1	Q99332	602 aa		4.79	□□□□□ -1.64
RPC40	YPR110C	DAL1	P32375	460 aa		4.78	□□□□□ -1.64
RPC40	YPR110C	DLD1	P32891	587 aa		4.78	□□□□□ -1.64
RPC40	YPR110C	NUP85	P46673	744 aa		4.78	□□□□□ -1.64
RPC40	YPR110C	VTC4	P47075	721 aa		4.78	□□□□□ -1.64
RPC40	YPR110C	FOX2	Q02207	900 aa	Known RBP	4.78	□□□□□ -1.64
RPC40	YPR110C	RPS31	P05759	152 aa	Known RBP	4.77	□□□□□ -1.65
RPC40	YPR110C	VMA3	P25515	160 aa		4.77	□□□□□ -1.65
RPC40	YPR110C	KTR2	P33550	425 aa		4.77	□□□□□ -1.65
RPC40	YPR110C	GLY1	P37303	387 aa	Known RBP	4.77	□□□□□ -1.65
RPC40	YPR110C	JJJ2	P46997	583 aa		4.77	□□□□□ -1.65
RPC40	YPR110C	YNL165W	P53891	406 aa		4.77	□□□□□ -1.65
RPC40	YPR110C	UFD2	P54860	961 aa		4.77	□□□□□ -1.65
RPC40	YPR110C	MNL2	Q12205	849 aa		4.77	□□□□□ -1.65
RPC40	YPR110C	TY1A-BL	Q12266	440 aa		4.77	□□□□□ -1.65
RPC40	YPR110C	SLA1	P32790	1244 aa		4.76	□□□□□ -1.65
RPC40	YPR110C	ALA1	P40825	983 aa	Known RBP	4.76	□□□□□ -1.65
RPC40	YPR110C	Q0182	Q9ZZW1	134 aa		4.76	□□□□□ -1.65
RPC40	YPR110C	ATE1	P16639	503 aa		4.75	□□□□□ -1.65
RPC40	YPR110C	RPB10	P22139	70 aa		4.75	□□□□□ -1.65
RPC40	YPR110C	IRE1	P32361	1115 aa		4.75	□□□□□ -1.65
RPC40	YPR110C	MET4	P32389	672 aa		4.75	□□□□□ -1.65
RPC40	YPR110C	SMC1	P32908	1225 aa		4.75	□□□□□ -1.65
RPC40	YPR110C	SHM1	P37292	490 aa	Predicted RBP	4.75	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 60.6 ms