RNA–Protein interactions for RNA: YKR043C

SHB17, Transcript of Sedoheptulose bisphosphatase involved in riboneogenesis, yeast

Gene SHB17, Length 816 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHB17	YKR043C	RVB2	Q12464	471 aa	Known RBP	12.77	□□□□□ -0.37
SHB17	YKR043C	SIT4	P20604	311 aa		12.76	□□□□□ -0.37
SHB17	YKR043C	FCP1	Q03254	732 aa		12.76	□□□□□ -0.37
SHB17	YKR043C	NSR1	P27476	414 aa	Known RBP RIP-Chip data	12.75	□□□□□ -0.37	RIP-Chip
SHB17	YKR043C	YGR122W	P53272	402 aa		12.75	□□□□□ -0.37
SHB17	YKR043C	SQS1	P53866	767 aa	Known RBP	12.74	□□□□□ -0.37
SHB17	YKR043C	SYF1	Q04048	859 aa	Predicted RBP	12.74	□□□□□ -0.37
SHB17	YKR043C	SET1	P38827	1080 aa	Known RBP	12.73	□□□□□ -0.37
SHB17	YKR043C	MAK21	Q12176	1025 aa	Known RBP	12.73	□□□□□ -0.37
SHB17	YKR043C	FRD1	P32614	470 aa	Known RBP	12.71	□□□□□ -0.37
SHB17	YKR043C	RAD24	P32641	659 aa		12.71	□□□□□ -0.37
SHB17	YKR043C	PRS1	P32895	427 aa	Known RBP	12.71	□□□□□ -0.37
SHB17	YKR043C	RPN1	P38764	993 aa	Known RBP	12.71	□□□□□ -0.37
SHB17	YKR043C	YRB30	P53107	440 aa	Predicted RBP	12.71	□□□□□ -0.37
SHB17	YKR043C	ICL1	P28240	557 aa	Predicted RBP	12.7	□□□□□ -0.38
SHB17	YKR043C	YPP1	P46951	817 aa		12.7	□□□□□ -0.38
SHB17	YKR043C	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	12.7	□□□□□ -0.38	not detected
SHB17	YKR043C	SAS4	Q04003	481 aa		12.7	□□□□□ -0.38
SHB17	YKR043C	TOP1	P04786	769 aa		12.69	□□□□□ -0.38
SHB17	YKR043C	SWC3	P31376	625 aa		12.69	□□□□□ -0.38
SHB17	YKR043C	ITC1	P53125	1264 aa		12.69	□□□□□ -0.38
SHB17	YKR043C	GRX6	Q12438	231 aa		12.69	□□□□□ -0.38
SHB17	YKR043C	NOP8	Q08287	484 aa	Predicted RBP	12.68	□□□□□ -0.38
SHB17	YKR043C	SAC3	P46674	1301 aa		12.67	□□□□□ -0.38
SHB17	YKR043C	YKU70	P32807	602 aa		12.67	□□□□□ -0.38
SHB17	YKR043C	FPK1	P53739	893 aa		12.67	□□□□□ -0.38
SHB17	YKR043C	CSI1	Q04368	295 aa		12.67	□□□□□ -0.38
SHB17	YKR043C	PSH1	Q12161	406 aa		12.67	□□□□□ -0.38
SHB17	YKR043C	YIL092W	P40497	633 aa		12.66	□□□□□ -0.38
SHB17	YKR043C	SHC1	P39000	512 aa		12.65	□□□□□ -0.38
SHB17	YKR043C	BOI2	P39969	1040 aa		12.65	□□□□□ -0.38
SHB17	YKR043C	RPS9B	P05755	195 aa	Known RBP	12.64	□□□□□ -0.39
SHB17	YKR043C	DAL5	P15365	543 aa		12.64	□□□□□ -0.39
SHB17	YKR043C	UBP12	P39538	1254 aa		12.64	□□□□□ -0.39
SHB17	YKR043C	DPH6	Q12429	685 aa		12.64	□□□□□ -0.39
SHB17	YKR043C	RPS19A	P07280	144 aa	Known RBP	12.63	□□□□□ -0.39
SHB17	YKR043C	RPS19B	P07281	144 aa	Predicted RBP	12.63	□□□□□ -0.39
SHB17	YKR043C	MTC5	Q03897	1148 aa		12.63	□□□□□ -0.39
SHB17	YKR043C	ATG20	Q07528	640 aa		12.63	□□□□□ -0.39
SHB17	YKR043C	RET1	P22276	1149 aa	Known RBP	12.62	□□□□□ -0.39
SHB17	YKR043C	DIP2	Q12220	943 aa	Predicted RBP	12.62	□□□□□ -0.39
SHB17	YKR043C	ICP55	P40051	511 aa		12.61	□□□□□ -0.39
SHB17	YKR043C	HXT10	P43581	546 aa		12.61	□□□□□ -0.39
SHB17	YKR043C	HKR1	P41809	1802 aa		12.6	□□□□□ -0.39
SHB17	YKR043C	SLI15	P38283	698 aa		12.6	□□□□□ -0.39
SHB17	YKR043C	KRE2	P27809	442 aa		12.59	□□□□□ -0.39
SHB17	YKR043C	TRP5	P00931	707 aa	Known RBP	12.58	□□□□□ -0.4
SHB17	YKR043C	SET4	P42948	560 aa		12.58	□□□□□ -0.4
SHB17	YKR043C	DPL1	Q05567	589 aa		12.58	□□□□□ -0.4
SHB17	YKR043C	SUP35	P05453	685 aa	Known RBP	12.57	□□□□□ -0.4
SHB17	YKR043C	RAD2	P07276	1031 aa		12.57	□□□□□ -0.4
SHB17	YKR043C	MGM1	P32266	881 aa		12.57	□□□□□ -0.4
SHB17	YKR043C	NGR1	P32831	672 aa	Known RBP	12.57	□□□□□ -0.4
SHB17	YKR043C	SPL2	P38839	148 aa		12.57	□□□□□ -0.4
SHB17	YKR043C	RPT4	P53549	437 aa	Known RBP	12.57	□□□□□ -0.4
SHB17	YKR043C	THI3	Q07471	609 aa		12.57	□□□□□ -0.4
SHB17	YKR043C	FUN12	P39730	1002 aa	Known RBP	12.55	□□□□□ -0.4
SHB17	YKR043C	UBX2	Q04228	584 aa		12.55	□□□□□ -0.4
SHB17	YKR043C	PUS5	Q06244	254 aa		12.55	□□□□□ -0.4
SHB17	YKR043C	SNU66	Q12420	587 aa	Predicted RBP	12.54	□□□□□ -0.4
SHB17	YKR043C	FAS2	P19097	1887 aa	Known RBP	12.53	□□□□□ -0.4
SHB17	YKR043C	FIG2	P25653	1609 aa		12.53	□□□□□ -0.4
SHB17	YKR043C	THS1	P04801	734 aa	Known RBP	12.53	□□□□□ -0.4
SHB17	YKR043C	YNG2	P38806	282 aa	Known RBP	12.53	□□□□□ -0.4
SHB17	YKR043C	YLR278C	Q05854	1341 aa		12.53	□□□□□ -0.4
SHB17	YKR043C	SSA4	P22202	642 aa	Known RBP	12.52	□□□□□ -0.41
SHB17	YKR043C	MSM1	P22438	575 aa		12.52	□□□□□ -0.41
SHB17	YKR043C	TIF4632	P39936	914 aa	Known RBP	12.52	□□□□□ -0.41
SHB17	YKR043C	SRC1	Q03707	834 aa		12.52	□□□□□ -0.41
SHB17	YKR043C	GAS5	Q08193	484 aa		12.52	□□□□□ -0.41
SHB17	YKR043C	ADR1	P07248	1323 aa		12.52	□□□□□ -0.41
SHB17	YKR043C	PEX21	P50091	288 aa		12.51	□□□□□ -0.41
SHB17	YKR043C	SPO1	P53541	631 aa		12.51	□□□□□ -0.41
SHB17	YKR043C	RTG2	P32608	588 aa	Known RBP	12.5	□□□□□ -0.41
SHB17	YKR043C	ILV3	P39522	585 aa	Known RBP	12.5	□□□□□ -0.41
SHB17	YKR043C	GAP1	P19145	602 aa	Predicted RBP	12.49	□□□□□ -0.41
SHB17	YKR043C	GCD7	P32502	381 aa	Predicted RBP	12.49	□□□□□ -0.41
SHB17	YKR043C	RRG1	Q12167	365 aa	Predicted RBP	12.49	□□□□□ -0.41
SHB17	YKR043C	POM152	P39685	1337 aa		12.48	□□□□□ -0.41
SHB17	YKR043C	LCB1	P25045	558 aa	Known RBP	12.48	□□□□□ -0.41
SHB17	YKR043C	SLA1	P32790	1244 aa		12.48	□□□□□ -0.41
SHB17	YKR043C	FET4	P40988	552 aa		12.48	□□□□□ -0.41
SHB17	YKR043C	HGH1	P48362	394 aa	Known RBP	12.48	□□□□□ -0.41
SHB17	YKR043C	IRC4	Q03036	179 aa		12.48	□□□□□ -0.41
SHB17	YKR043C	DUR1,2	P32528	1835 aa	Known RBP	12.48	□□□□□ -0.41
SHB17	YKR043C	GLC3	P32775	704 aa		12.47	□□□□□ -0.41
SHB17	YKR043C	AFG2	P32794	780 aa		12.47	□□□□□ -0.41
SHB17	YKR043C	GSM1	P42950	618 aa		12.47	□□□□□ -0.41
SHB17	YKR043C	POL32	P47110	350 aa		12.47	□□□□□ -0.41
SHB17	YKR043C	SSF1	P38789	453 aa	Predicted RBP	12.46	□□□□□ -0.41
SHB17	YKR043C	NUG1	P40010	520 aa	Known RBP	12.46	□□□□□ -0.41
SHB17	YKR043C	TRM44	Q02648	567 aa	Known RBP	12.46	□□□□□ -0.41
SHB17	YKR043C	TIM50	Q02776	476 aa		12.46	□□□□□ -0.41
SHB17	YKR043C	PUF6	Q04373	656 aa	Known RBP	12.46	□□□□□ -0.41
SHB17	YKR043C	TOS4	Q06266	489 aa		12.46	□□□□□ -0.41
SHB17	YKR043C	GYP5	Q12344	894 aa		12.46	□□□□□ -0.41
SHB17	YKR043C	FLO11	P08640	1367 aa		12.45	□□□□□ -0.42
SHB17	YKR043C	SEC18	P18759	758 aa	Known RBP	12.45	□□□□□ -0.42
SHB17	YKR043C	TFA1	P36100	482 aa		12.45	□□□□□ -0.42
SHB17	YKR043C	PRP42	Q03776	544 aa	Known RBP	12.45	□□□□□ -0.42

Retrieved 100 of 5,963 RNA–protein pairs in 51.2 ms