RNA–Protein interactions for RNA: YIL030C

SSM4, Transcript of Ubiquitin-protein ligase involved in ER-associated protein degradation, yeast

Gene SSM4, Length 3,960 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSM4	YIL030C	MCM2	P29469	868 aa		4.26	□□□□□ -1.73
SSM4	YIL030C	HXT13	P39924	564 aa		4.26	□□□□□ -1.73
SSM4	YIL030C	TUS1	Q06412	1307 aa		4.26	□□□□□ -1.73
SSM4	YIL030C	HXT1	P32465	570 aa		4.26	□□□□□ -1.73
SSM4	YIL030C	NPR3	P38742	1146 aa		4.26	□□□□□ -1.73
SSM4	YIL030C	MATALPHA2	P0CY08	210 aa		4.26	□□□□□ -1.73
SSM4	YIL030C	HMLALPHA2	P0CY09	210 aa		4.26	□□□□□ -1.73
SSM4	YIL030C	ATE1	P16639	503 aa		4.26	□□□□□ -1.73
SSM4	YIL030C	RCM1	P53972	490 aa		4.26	□□□□□ -1.73
SSM4	YIL030C	NOP58	Q12499	511 aa	Known RBP	4.26	□□□□□ -1.73
SSM4	YIL030C	TCD1	P38756	429 aa		4.25	□□□□□ -1.73
SSM4	YIL030C	ALF1	P53904	254 aa		4.25	□□□□□ -1.73
SSM4	YIL030C	RMP1	Q12530	201 aa		4.25	□□□□□ -1.73
SSM4	YIL030C	DAL5	P15365	543 aa		4.25	□□□□□ -1.73
SSM4	YIL030C	PHO13	P19881	312 aa		4.25	□□□□□ -1.73
SSM4	YIL030C	MUD2	P36084	527 aa	Known RBP	4.25	□□□□□ -1.73
SSM4	YIL030C	CWH41	P53008	833 aa		4.25	□□□□□ -1.73
SSM4	YIL030C	HXT17	P53631	564 aa		4.25	□□□□□ -1.73
SSM4	YIL030C	KAR2	P16474	682 aa	Known RBP	4.25	□□□□□ -1.73
SSM4	YIL030C	CBP3	P21560	335 aa		4.25	□□□□□ -1.73
SSM4	YIL030C	FUN12	P39730	1002 aa	Known RBP	4.25	□□□□□ -1.73
SSM4	YIL030C	ABP140	Q08641	628 aa	Known RBP	4.25	□□□□□ -1.73
SSM4	YIL030C	LEO1	P38439	464 aa		4.24	□□□□□ -1.73
SSM4	YIL030C	DJP1	P40564	432 aa		4.24	□□□□□ -1.73
SSM4	YIL030C	MAK10	Q02197	733 aa		4.24	□□□□□ -1.73
SSM4	YIL030C	TDA5	Q06417	326 aa	Known RBP	4.24	□□□□□ -1.73
SSM4	YIL030C	INP54	Q08227	384 aa	Known RBP	4.24	□□□□□ -1.73
SSM4	YIL030C	RAD24	P32641	659 aa		4.24	□□□□□ -1.73
SSM4	YIL030C	POL31	P46957	487 aa		4.24	□□□□□ -1.73
SSM4	YIL030C	RSC1	P53236	928 aa		4.24	□□□□□ -1.73
SSM4	YIL030C	MRS2	Q01926	470 aa		4.24	□□□□□ -1.73
SSM4	YIL030C	HOS3	Q02959	697 aa	Known RBP	4.24	□□□□□ -1.73
SSM4	YIL030C	COG4	Q06096	861 aa		4.24	□□□□□ -1.73
SSM4	YIL030C	PEX19	Q07418	342 aa		4.24	□□□□□ -1.73
SSM4	YIL030C	LAM4	P38800	1345 aa		4.23	□□□□□ -1.73
SSM4	YIL030C	RTF1	P53064	558 aa		4.23	□□□□□ -1.73
SSM4	YIL030C	MTC5	Q03897	1148 aa		4.23	□□□□□ -1.73
SSM4	YIL030C	SML1	Q04964	104 aa		4.23	□□□□□ -1.73
SSM4	YIL030C	OPI1	P21957	404 aa		4.23	□□□□□ -1.73
SSM4	YIL030C	PTP3	P40048	928 aa		4.23	□□□□□ -1.73
SSM4	YIL030C	CUE3	P53137	624 aa	Known RBP	4.23	□□□□□ -1.73
SSM4	YIL030C	PUF6	Q04373	656 aa	Known RBP	4.23	□□□□□ -1.73
SSM4	YIL030C	NAP1	P25293	417 aa	Known RBP	4.23	□□□□□ -1.73
SSM4	YIL030C	BUD16	P39988	312 aa		4.23	□□□□□ -1.73
SSM4	YIL030C	BBC1	P47068	1157 aa		4.23	□□□□□ -1.73
SSM4	YIL030C	KAR5	Q04746	504 aa		4.23	□□□□□ -1.73
SSM4	YIL030C	ECM21	P38167	1117 aa	Known RBP	4.22	□□□□□ -1.73
SSM4	YIL030C	ZDS1	P50111	915 aa	Known RBP	4.22	□□□□□ -1.73
SSM4	YIL030C	YNL035C	P53962	389 aa	Known RBP	4.22	□□□□□ -1.73
SSM4	YIL030C	YLR271W	Q06152	274 aa		4.22	□□□□□ -1.73
SSM4	YIL030C	LEU3	P08638	886 aa		4.22	□□□□□ -1.73
SSM4	YIL030C	FLO11	P08640	1367 aa		4.22	□□□□□ -1.73
SSM4	YIL030C	MED8	P38304	223 aa		4.22	□□□□□ -1.73
SSM4	YIL030C	YHL017W	P38745	532 aa		4.22	□□□□□ -1.73
SSM4	YIL030C	TDA3	P38758	523 aa		4.22	□□□□□ -1.73
SSM4	YIL030C	MRPS35	P53292	345 aa		4.22	□□□□□ -1.73
SSM4	YIL030C	BOP3	P53958	396 aa		4.22	□□□□□ -1.73
SSM4	YIL030C	PSK2	Q08217	1101 aa		4.22	□□□□□ -1.73
SSM4	YIL030C	ISW2	Q08773	1120 aa		4.22	□□□□□ -1.73
SSM4	YIL030C	RIM20	Q12033	661 aa		4.22	□□□□□ -1.73
SSM4	YIL030C	SPC110	P32380	944 aa		4.21	□□□□□ -1.73
SSM4	YIL030C	PSY4	P38193	441 aa		4.21	□□□□□ -1.73
SSM4	YIL030C	ATG9	Q12142	997 aa		4.21	□□□□□ -1.73
SSM4	YIL030C	LAA1	P39526	2014 aa		4.21	□□□□□ -1.74
SSM4	YIL030C	TPS3	P38426	1054 aa	Known RBP	4.21	□□□□□ -1.74
SSM4	YIL030C	LTV1	P34078	463 aa		4.21	□□□□□ -1.74
SSM4	YIL030C	ATG32	P40458	529 aa		4.21	□□□□□ -1.74
SSM4	YIL030C	RSM25	P40496	264 aa		4.21	□□□□□ -1.74
SSM4	YIL030C	MRX12	P47084	519 aa		4.21	□□□□□ -1.74
SSM4	YIL030C	KEX2	P13134	814 aa		4.2	□□□□□ -1.74
SSM4	YIL030C	MRC1	P25588	1096 aa		4.2	□□□□□ -1.74
SSM4	YIL030C	TTI1	P36097	1038 aa		4.2	□□□□□ -1.74
SSM4	YIL030C	MMS21	P38632	267 aa		4.2	□□□□□ -1.74
SSM4	YIL030C	CCT5	P40413	562 aa	Known RBP	4.2	□□□□□ -1.74
SSM4	YIL030C	SMC3	P47037	1230 aa		4.2	□□□□□ -1.74
SSM4	YIL030C	VPS20	Q04272	221 aa		4.2	□□□□□ -1.74
SSM4	YIL030C	NEW1	Q08972	1196 aa	Known RBP	4.2	□□□□□ -1.74
SSM4	YIL030C	SLM3	Q12093	417 aa		4.2	□□□□□ -1.74
SSM4	YIL030C	OSH3	P38713	996 aa	Known RBP	4.2	□□□□□ -1.74
SSM4	YIL030C	SSF1	P38789	453 aa	Predicted RBP	4.2	□□□□□ -1.74
SSM4	YIL030C	CST6	P40535	587 aa		4.2	□□□□□ -1.74
SSM4	YIL030C	NOP6	Q07623	225 aa	Known RBP	4.2	□□□□□ -1.74
SSM4	YIL030C	CTI6	Q08923	506 aa		4.2	□□□□□ -1.74
SSM4	YIL030C	TSR3	Q12094	313 aa	Known RBP	4.2	□□□□□ -1.74
SSM4	YIL030C	SEC23	P15303	768 aa	Known RBP	4.2	□□□□□ -1.74
SSM4	YIL030C	SCJ1	P25303	377 aa		4.2	□□□□□ -1.74
SSM4	YIL030C	GCG1	P32656	232 aa	Known RBP	4.2	□□□□□ -1.74
SSM4	YIL030C	UBP12	P39538	1254 aa		4.2	□□□□□ -1.74
SSM4	YIL030C	SPO11	P23179	398 aa		4.19	□□□□□ -1.74
SSM4	YIL030C	YEL043W	P32618	956 aa		4.19	□□□□□ -1.74
SSM4	YIL030C	MRPL10	P36520	322 aa		4.19	□□□□□ -1.74
SSM4	YIL030C	GLO3	P38682	493 aa	Known RBP	4.19	□□□□□ -1.74
SSM4	YIL030C	YNG2	P38806	282 aa	Known RBP	4.19	□□□□□ -1.74
SSM4	YIL030C	CTK3	P46963	296 aa	Predicted RBP	4.19	□□□□□ -1.74
SSM4	YIL030C	PGI1	P12709	554 aa	Known RBP	4.19	□□□□□ -1.74
SSM4	YIL030C	ARG8	P18544	423 aa		4.19	□□□□□ -1.74
SSM4	YIL030C	RRP1	P35178	278 aa	Predicted RBP	4.19	□□□□□ -1.74
SSM4	YIL030C	PPX1	P38698	397 aa		4.19	□□□□□ -1.74
SSM4	YIL030C	ALO1	P54783	526 aa	Known RBP	4.19	□□□□□ -1.74
SSM4	YIL030C	ELG1	Q12050	791 aa		4.19	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 28.4 ms