RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	PUS5	Q06244	254 aa		7.16	□□□□□ -1.26
CAF16	YFL028C	CHL1	P22516	861 aa	Predicted RBP	7.15	□□□□□ -1.26
CAF16	YFL028C	QDR1	P40475	563 aa		7.15	□□□□□ -1.26
CAF16	YFL028C	YJL171C	P46992	396 aa		7.15	□□□□□ -1.26
CAF16	YFL028C	POL32	P47110	350 aa		7.15	□□□□□ -1.26
CAF16	YFL028C	THO2	P53552	1597 aa	Known RBP	7.15	□□□□□ -1.27
CAF16	YFL028C	ALD2	P47771	506 aa		7.14	□□□□□ -1.27
CAF16	YFL028C	WHI5	Q12416	295 aa		7.14	□□□□□ -1.27
CAF16	YFL028C	AIM44	Q99299	758 aa		7.14	□□□□□ -1.27
CAF16	YFL028C	CYT1	P07143	309 aa		7.13	□□□□□ -1.27
CAF16	YFL028C	RPS6A	P0CX37	236 aa	Known RBP	7.13	□□□□□ -1.27
CAF16	YFL028C	RPS6B	P0CX38	236 aa	Predicted RBP	7.13	□□□□□ -1.27
CAF16	YFL028C	SUV3	P32580	737 aa		7.13	□□□□□ -1.27
CAF16	YFL028C	PPX1	P38698	397 aa		7.13	□□□□□ -1.27
CAF16	YFL028C	CWH41	P53008	833 aa		7.13	□□□□□ -1.27
CAF16	YFL028C	BUD4	P47136	1447 aa		7.12	□□□□□ -1.27
CAF16	YFL028C	ECM5	Q03214	1411 aa		7.12	□□□□□ -1.27
CAF16	YFL028C	NUT2	Q06213	157 aa		7.12	□□□□□ -1.27
CAF16	YFL028C	ATE1	P16639	503 aa		7.11	□□□□□ -1.27
CAF16	YFL028C	MRF1	P30775	413 aa	Predicted RBP	7.11	□□□□□ -1.27
CAF16	YFL028C	UTR2	P32623	467 aa		7.11	□□□□□ -1.27
CAF16	YFL028C	EMW1	P42842	904 aa	Known RBP	7.11	□□□□□ -1.27
CAF16	YFL028C	ORC1	P54784	914 aa	Predicted RBP	7.11	□□□□□ -1.27
CAF16	YFL028C	SYH1	Q02875	849 aa	Known RBP	7.11	□□□□□ -1.27
CAF16	YFL028C	FRT1	Q99332	602 aa		7.11	□□□□□ -1.27
CAF16	YFL028C	SWI5	P08153	709 aa		7.1	□□□□□ -1.27
CAF16	YFL028C	UBP1	P25037	809 aa		7.1	□□□□□ -1.27
CAF16	YFL028C	BDP1	P46678	594 aa		7.1	□□□□□ -1.27
CAF16	YFL028C	ACF4	P47129	309 aa		7.1	□□□□□ -1.27
CAF16	YFL028C	FRK1	Q03002	865 aa	Predicted RBP	7.1	□□□□□ -1.27
CAF16	YFL028C	RRP15	Q06511	250 aa	Predicted RBP	7.1	□□□□□ -1.27
CAF16	YFL028C	DAT1	P13483	248 aa	Known RBP	7.09	□□□□□ -1.27
CAF16	YFL028C	MKS1	P34072	584 aa		7.09	□□□□□ -1.27
CAF16	YFL028C	ISU1	Q03020	165 aa		7.09	□□□□□ -1.27
CAF16	YFL028C	REV3	P14284	1504 aa		7.09	□□□□□ -1.27
CAF16	YFL028C	FOX2	Q02207	900 aa	Known RBP	7.08	□□□□□ -1.28
CAF16	YFL028C	SPT2	P06843	333 aa	Predicted RBP	7.07	□□□□□ -1.28
CAF16	YFL028C	FBP26	P32604	452 aa		7.07	□□□□□ -1.28
CAF16	YFL028C	NGR1	P32831	672 aa	Known RBP	7.07	□□□□□ -1.28
CAF16	YFL028C	TBS1	P38114	1094 aa		7.07	□□□□□ -1.28
CAF16	YFL028C	LSO1	Q3E827	93 aa		7.07	□□□□□ -1.28
CAF16	YFL028C	BOI1	P38041	980 aa	Known RBP	7.06	□□□□□ -1.28
CAF16	YFL028C	SDH2	P21801	266 aa		7.05	□□□□□ -1.28
CAF16	YFL028C	ISC10	P32645	267 aa		7.05	□□□□□ -1.28
CAF16	YFL028C	CST6	P40535	587 aa		7.05	□□□□□ -1.28
CAF16	YFL028C	OYE2	Q03558	400 aa	Known RBP	7.05	□□□□□ -1.28
CAF16	YFL028C	MDS3	P53094	1487 aa		7.04	□□□□□ -1.28
CAF16	YFL028C	SEC8	P32855	1065 aa		7.04	□□□□□ -1.28
CAF16	YFL028C	YBR197C	P38306	217 aa		7.04	□□□□□ -1.28
CAF16	YFL028C	MGE1	P38523	228 aa		7.04	□□□□□ -1.28
CAF16	YFL028C	MET4	P32389	672 aa		7.03	□□□□□ -1.28
CAF16	YFL028C	SPR3	P41901	512 aa		7.03	□□□□□ -1.28
CAF16	YFL028C	CAB1	Q04430	367 aa		7.03	□□□□□ -1.28
CAF16	YFL028C	DFG5	Q05031	458 aa		7.03	□□□□□ -1.28
CAF16	YFL028C	ATG2	P53855	1592 aa		7.03	□□□□□ -1.28
CAF16	YFL028C	SIN3	P22579	1536 aa		7.02	□□□□□ -1.29
CAF16	YFL028C	SIS1	P25294	352 aa	Known RBP	7.02	□□□□□ -1.29
CAF16	YFL028C	TRS120	Q04183	1289 aa		7.02	□□□□□ -1.29
CAF16	YFL028C	WTM2	Q12206	467 aa		7.02	□□□□□ -1.29
CAF16	YFL028C	PEP1	P32319	1579 aa		7.02	□□□□□ -1.29
CAF16	YFL028C	RPB10	P22139	70 aa		7.01	□□□□□ -1.29
CAF16	YFL028C	VRP1	P37370	817 aa		7.01	□□□□□ -1.29
CAF16	YFL028C	STB3	Q12427	513 aa		7.01	□□□□□ -1.29
CAF16	YFL028C	RPP2B	P02400	110 aa	Known RBP	7	□□□□□ -1.29
CAF16	YFL028C	STE6	P12866	1290 aa		7	□□□□□ -1.29
CAF16	YFL028C	UTP7	P40055	554 aa	Known RBP	7	□□□□□ -1.29
CAF16	YFL028C	BDS1	Q08347	646 aa		7	□□□□□ -1.29
CAF16	YFL028C	MRT4	P33201	236 aa	Known RBP	6.99	□□□□□ -1.29
CAF16	YFL028C	YBL086C	P38177	466 aa		6.99	□□□□□ -1.29
CAF16	YFL028C	MET1	P36150	593 aa		6.98	□□□□□ -1.29
CAF16	YFL028C	YJR107W	P47145	328 aa		6.98	□□□□□ -1.29
CAF16	YFL028C	SUT1	P53032	299 aa	Known RBP	6.98	□□□□□ -1.29
CAF16	YFL028C	GPI13	Q07830	1017 aa		6.98	□□□□□ -1.29
CAF16	YFL028C	SSK2	P53599	1579 aa		6.98	□□□□□ -1.29
CAF16	YFL028C	DLD3	P39976	496 aa	Known RBP	6.97	□□□□□ -1.29
CAF16	YFL028C	UFD2	P54860	961 aa		6.97	□□□□□ -1.29
CAF16	YFL028C	JIP5	Q06214	492 aa	Predicted RBP	6.97	□□□□□ -1.29
CAF16	YFL028C	APC11	Q12157	165 aa		6.97	□□□□□ -1.29
CAF16	YFL028C	TAF2	P23255	1407 aa		6.96	□□□□□ -1.3
CAF16	YFL028C	HXT5	P38695	592 aa		6.96	□□□□□ -1.3
CAF16	YFL028C	SVF1	Q05515	481 aa		6.96	□□□□□ -1.3
CAF16	YFL028C	MRPL33	P20084	86 aa		6.95	□□□□□ -1.3
CAF16	YFL028C	RPT1	P33299	467 aa	Known RBP	6.95	□□□□□ -1.3
CAF16	YFL028C	YPQ2	Q06328	317 aa		6.95	□□□□□ -1.3
CAF16	YFL028C	MCM1	P11746	286 aa		6.94	□□□□□ -1.3
CAF16	YFL028C	FYV10	P40492	516 aa		6.94	□□□□□ -1.3
CAF16	YFL028C	SUM1	P46676	1062 aa		6.94	□□□□□ -1.3
CAF16	YFL028C	SCD5	P34758	872 aa		6.93	□□□□□ -1.3
CAF16	YFL028C	MNL2	Q12205	849 aa		6.93	□□□□□ -1.3
CAF16	YFL028C	ESP1	Q03018	1630 aa		6.92	□□□□□ -1.3
CAF16	YFL028C	PHO4	P07270	312 aa	Known RBP	6.92	□□□□□ -1.3
CAF16	YFL028C	MCM2	P29469	868 aa		6.92	□□□□□ -1.3
CAF16	YFL028C	KTR2	P33550	425 aa		6.92	□□□□□ -1.3
CAF16	YFL028C	ALA1	P40825	983 aa	Known RBP	6.91	□□□□□ -1.3
CAF16	YFL028C	HED1	Q03937	162 aa		6.91	□□□□□ -1.3
CAF16	YFL028C	VMA3	P25515	160 aa		6.9	□□□□□ -1.3
CAF16	YFL028C	GCD6	P32501	712 aa	Known RBP	6.9	□□□□□ -1.3
CAF16	YFL028C	DAK2	P43550	591 aa		6.9	□□□□□ -1.3
CAF16	YFL028C	SPR28	Q04921	423 aa		6.9	□□□□□ -1.3
CAF16	YFL028C	Q0182	Q9ZZW1	134 aa		6.9	□□□□□ -1.3

Retrieved 100 of 5,963 RNA–protein pairs in 11.5 ms