RNA–Protein interactions for RNA: YDR340W

YDR340W, Transcript of Putative protein of unknown function, yeast

Gene YDR340W, Length 303 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
YDR340W	YDR340W	ISR1	Q06098	443 aa	Known RBP	4.94	□□□□□ -1.62
YDR340W	YDR340W	CWH41	P53008	833 aa		4.93	□□□□□ -1.62
YDR340W	YDR340W	DOS2	P54858	310 aa		4.93	□□□□□ -1.62
YDR340W	YDR340W	LSO1	Q3E827	93 aa		4.93	□□□□□ -1.62
YDR340W	YDR340W	SUV3	P32580	737 aa		4.92	□□□□□ -1.62
YDR340W	YDR340W	NTH2	P35172	780 aa		4.92	□□□□□ -1.62
YDR340W	YDR340W	FYV10	P40492	516 aa		4.92	□□□□□ -1.62
YDR340W	YDR340W	YAF9	P53930	226 aa		4.92	□□□□□ -1.62
YDR340W	YDR340W	HAP5	Q02516	242 aa		4.92	□□□□□ -1.62
YDR340W	YDR340W	HDA3	Q06623	655 aa		4.92	□□□□□ -1.62
YDR340W	YDR340W	BUD20	Q08004	166 aa	Predicted RBP	4.92	□□□□□ -1.62
YDR340W	YDR340W	MNL2	Q12205	849 aa		4.92	□□□□□ -1.62
YDR340W	YDR340W	YOL098C	Q12496	1037 aa		4.92	□□□□□ -1.62
YDR340W	YDR340W	VAC17	P25591	423 aa		4.91	□□□□□ -1.62
YDR340W	YDR340W	NMD2	P38798	1089 aa	Known RBP	4.91	□□□□□ -1.62
YDR340W	YDR340W	VAC8	P39968	578 aa		4.91	□□□□□ -1.62
YDR340W	YDR340W	RRN7	P40992	514 aa		4.91	□□□□□ -1.62
YDR340W	YDR340W	SPR3	P41901	512 aa		4.91	□□□□□ -1.62
YDR340W	YDR340W	HXT10	P43581	546 aa		4.91	□□□□□ -1.62
YDR340W	YDR340W	TRS120	Q04183	1289 aa		4.91	□□□□□ -1.62
YDR340W	YDR340W	SPT2	P06843	333 aa	Predicted RBP	4.9	□□□□□ -1.63
YDR340W	YDR340W	CYT1	P07143	309 aa		4.9	□□□□□ -1.63
YDR340W	YDR340W	PAT1	P25644	796 aa	Known RBP	4.9	□□□□□ -1.63
YDR340W	YDR340W	MCM2	P29469	868 aa		4.9	□□□□□ -1.63
YDR340W	YDR340W	RPT1	P33299	467 aa	Known RBP	4.9	□□□□□ -1.63
YDR340W	YDR340W	BOI1	P38041	980 aa	Known RBP	4.9	□□□□□ -1.63
YDR340W	YDR340W	SPT23	P35210	1082 aa		4.89	□□□□□ -1.63
YDR340W	YDR340W	MAD1	P40957	749 aa		4.89	□□□□□ -1.63
YDR340W	YDR340W	RNH70	P53331	553 aa		4.89	□□□□□ -1.63
YDR340W	YDR340W	ALD6	P54115	500 aa	Known RBP	4.89	□□□□□ -1.63
YDR340W	YDR340W	SPR28	Q04921	423 aa		4.89	□□□□□ -1.63
YDR340W	YDR340W	ATG20	Q07528	640 aa		4.89	□□□□□ -1.63
YDR340W	YDR340W	PRT1	P06103	763 aa	Known RBP	4.88	□□□□□ -1.63
YDR340W	YDR340W	RPS6A	P0CX37	236 aa	Known RBP	4.88	□□□□□ -1.63
YDR340W	YDR340W	RPS6B	P0CX38	236 aa	Predicted RBP	4.88	□□□□□ -1.63
YDR340W	YDR340W	UBP1	P25037	809 aa		4.88	□□□□□ -1.63
YDR340W	YDR340W	SRP40	P32583	406 aa	Predicted RBP	4.88	□□□□□ -1.63
YDR340W	YDR340W	PEP7	P32609	515 aa		4.88	□□□□□ -1.63
YDR340W	YDR340W	NGR1	P32831	672 aa	Known RBP	4.88	□□□□□ -1.63
YDR340W	YDR340W	FAR11	P53917	953 aa		4.88	□□□□□ -1.63
YDR340W	YDR340W	ALD3	P54114	506 aa		4.88	□□□□□ -1.63
YDR340W	YDR340W	GPI13	Q07830	1017 aa		4.88	□□□□□ -1.63
YDR340W	YDR340W	PHO4	P07270	312 aa	Known RBP	4.87	□□□□□ -1.63
YDR340W	YDR340W	ISC10	P32645	267 aa		4.87	□□□□□ -1.63
YDR340W	YDR340W	PPG1	P32838	368 aa		4.87	□□□□□ -1.63
YDR340W	YDR340W	YBR197C	P38306	217 aa		4.87	□□□□□ -1.63
YDR340W	YDR340W	RRD1	P40454	393 aa	Known RBP	4.87	□□□□□ -1.63
YDR340W	YDR340W	FOX2	Q02207	900 aa	Known RBP	4.87	□□□□□ -1.63
YDR340W	YDR340W	SWI5	P08153	709 aa		4.86	□□□□□ -1.63
YDR340W	YDR340W	CLN2	P20438	545 aa		4.86	□□□□□ -1.63
YDR340W	YDR340W	UFD2	P54860	961 aa		4.86	□□□□□ -1.63
YDR340W	YDR340W	SRC1	Q03707	834 aa		4.86	□□□□□ -1.63
YDR340W	YDR340W	RPB10	P22139	70 aa		4.85	□□□□□ -1.63
YDR340W	YDR340W	TPD3	P31383	635 aa		4.85	□□□□□ -1.63
YDR340W	YDR340W	GCD6	P32501	712 aa	Known RBP	4.85	□□□□□ -1.63
YDR340W	YDR340W	SPT16	P32558	1035 aa	Known RBP	4.85	□□□□□ -1.63
YDR340W	YDR340W	YKL091C	P33324	310 aa	Known RBP	4.85	□□□□□ -1.63
YDR340W	YDR340W	DAK2	P43550	591 aa		4.85	□□□□□ -1.63
YDR340W	YDR340W	BNI4	P53858	892 aa		4.85	□□□□□ -1.63
YDR340W	YDR340W	VPS16	Q03308	798 aa		4.85	□□□□□ -1.63
YDR340W	YDR340W	PIN2	Q12057	282 aa		4.85	□□□□□ -1.63
YDR340W	YDR340W	WRS1	Q12109	432 aa	Known RBP	4.85	□□□□□ -1.63
YDR340W	YDR340W	RPS26A	P39938	119 aa	Known RBP	4.84	□□□□□ -1.63
YDR340W	YDR340W	RPS26B	P39939	119 aa	Known RBP	4.84	□□□□□ -1.63
YDR340W	YDR340W	RMD1	Q03441	430 aa		4.84	□□□□□ -1.63
YDR340W	YDR340W	BDS1	Q08347	646 aa		4.84	□□□□□ -1.63
YDR340W	YDR340W	KIP2	P28743	706 aa		4.83	□□□□□ -1.64
YDR340W	YDR340W	UTR2	P32623	467 aa		4.83	□□□□□ -1.64
YDR340W	YDR340W	PTC2	P39966	464 aa	Known RBP	4.83	□□□□□ -1.64
YDR340W	YDR340W	IOC3	P43596	787 aa		4.83	□□□□□ -1.64
YDR340W	YDR340W	OSW7	P43611	510 aa		4.83	□□□□□ -1.64
YDR340W	YDR340W	SUT1	P53032	299 aa	Known RBP	4.83	□□□□□ -1.64
YDR340W	YDR340W	CWC24	P53769	259 aa		4.83	□□□□□ -1.64
YDR340W	YDR340W	APP1	P53933	587 aa		4.83	□□□□□ -1.64
YDR340W	YDR340W	CAB1	Q04430	367 aa		4.83	□□□□□ -1.64
YDR340W	YDR340W	APC11	Q12157	165 aa		4.83	□□□□□ -1.64
YDR340W	YDR340W	DAT1	P13483	248 aa	Known RBP	4.82	□□□□□ -1.64
YDR340W	YDR340W	VPS35	P34110	944 aa		4.82	□□□□□ -1.64
YDR340W	YDR340W	RRP14	P36080	434 aa	Known RBP	4.82	□□□□□ -1.64
YDR340W	YDR340W	SAM37	P50110	327 aa		4.82	□□□□□ -1.64
YDR340W	YDR340W	ESF1	Q06344	628 aa	Known RBP	4.82	□□□□□ -1.64
YDR340W	YDR340W	OXR1	Q08952	273 aa		4.82	□□□□□ -1.64
YDR340W	YDR340W	YPR015C	Q12531	247 aa		4.82	□□□□□ -1.64
YDR340W	YDR340W	CIT2	P08679	460 aa		4.81	□□□□□ -1.64
YDR340W	YDR340W	PET112	P33893	541 aa		4.81	□□□□□ -1.64
YDR340W	YDR340W	TBS1	P38114	1094 aa		4.81	□□□□□ -1.64
YDR340W	YDR340W	RTT106	P40161	455 aa		4.81	□□□□□ -1.64
YDR340W	YDR340W	YNL011C	P53980	444 aa		4.81	□□□□□ -1.64
YDR340W	YDR340W	ISU1	Q03020	165 aa		4.81	□□□□□ -1.64
YDR340W	YDR340W	YML082W	Q04533	649 aa	Known RBP	4.81	□□□□□ -1.64
YDR340W	YDR340W	SSF2	Q12153	453 aa	Predicted RBP	4.81	□□□□□ -1.64
YDR340W	YDR340W	MOD5	P07884	428 aa		4.8	□□□□□ -1.64
YDR340W	YDR340W	YJL049W	P47048	450 aa		4.8	□□□□□ -1.64
YDR340W	YDR340W	CDC55	Q00362	526 aa		4.8	□□□□□ -1.64
YDR340W	YDR340W	NSE3	Q05541	303 aa		4.8	□□□□□ -1.64
YDR340W	YDR340W	CDC53	Q12018	815 aa	Known RBP	4.8	□□□□□ -1.64
YDR340W	YDR340W	CYC8	P14922	966 aa		4.79	□□□□□ -1.64
YDR340W	YDR340W	STI1	P15705	589 aa	Known RBP RIP-Chip data	4.79	□□□□□ -1.64	not detected
YDR340W	YDR340W	MNR2	P35724	969 aa		4.79	□□□□□ -1.64
YDR340W	YDR340W	CIC1	P38779	376 aa	Known RBP	4.79	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 10.1 ms