RNA–Protein interactions for RNA: YDL231C

BRE4, Transcript of Zinc finger protein containing five transmembrane domains, yeast

Gene BRE4, Length 3,378 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
BRE4	YDL231C	FKS3	Q04952	1785 aa		4.98	□□□□□ -1.61
BRE4	YDL231C	LPD1	P09624	499 aa	Known RBP	4.98	□□□□□ -1.61
BRE4	YDL231C	YIL055C	P40523	627 aa	Known RBP	4.98	□□□□□ -1.61
BRE4	YDL231C	CWH41	P53008	833 aa		4.98	□□□□□ -1.61
BRE4	YDL231C	DNM1	P54861	757 aa		4.98	□□□□□ -1.61
BRE4	YDL231C	IMP2'	P32351	346 aa		4.98	□□□□□ -1.61
BRE4	YDL231C	STM1	P39015	273 aa	Known RBP	4.98	□□□□□ -1.61
BRE4	YDL231C	URB1	P34241	1764 aa	Known RBP	4.97	□□□□□ -1.61
BRE4	YDL231C	DLD1	P32891	587 aa		4.97	□□□□□ -1.61
BRE4	YDL231C	RAD50	P12753	1312 aa		4.97	□□□□□ -1.61
BRE4	YDL231C	NGR1	P32831	672 aa	Known RBP	4.97	□□□□□ -1.61
BRE4	YDL231C	FOX2	Q02207	900 aa	Known RBP	4.97	□□□□□ -1.61
BRE4	YDL231C	SUP35	P05453	685 aa	Known RBP	4.96	□□□□□ -1.61
BRE4	YDL231C	GSM1	P42950	618 aa		4.96	□□□□□ -1.61
BRE4	YDL231C	LYS4	P49367	693 aa	Predicted RBP	4.96	□□□□□ -1.61
BRE4	YDL231C	SNF2	P22082	1703 aa		4.96	□□□□□ -1.62
BRE4	YDL231C	OXP1	P28273	1286 aa		4.96	□□□□□ -1.62
BRE4	YDL231C	YMR147W	P40218	223 aa	Known RBP	4.96	□□□□□ -1.62
BRE4	YDL231C	CST6	P40535	587 aa		4.96	□□□□□ -1.62
BRE4	YDL231C	CTF4	Q01454	927 aa		4.96	□□□□□ -1.62
BRE4	YDL231C	YAH1	Q12184	172 aa	Known RBP	4.96	□□□□□ -1.62
BRE4	YDL231C	RSF2	P46974	1380 aa		4.96	□□□□□ -1.62
BRE4	YDL231C	AI2	P03876	854 aa		4.96	□□□□□ -1.62
BRE4	YDL231C	BOI2	P39969	1040 aa		4.96	□□□□□ -1.62
BRE4	YDL231C	VID28	P40547	921 aa		4.96	□□□□□ -1.62
BRE4	YDL231C	ITC1	P53125	1264 aa		4.96	□□□□□ -1.62
BRE4	YDL231C	PGA3	Q12746	312 aa	Known RBP	4.96	□□□□□ -1.62
BRE4	YDL231C	YRF1-3	P0CX14	1859 aa		4.96	□□□□□ -1.62
BRE4	YDL231C	YRF1-7	P0CX15	1859 aa		4.96	□□□□□ -1.62
BRE4	YDL231C	YRF1-6	P53819	1859 aa		4.96	□□□□□ -1.62
BRE4	YDL231C	RPT3	P33298	428 aa	Known RBP	4.95	□□□□□ -1.62
BRE4	YDL231C	SSP2	Q08646	371 aa		4.95	□□□□□ -1.62
BRE4	YDL231C	PCT1	P13259	424 aa		4.95	□□□□□ -1.62
BRE4	YDL231C	MSB4	Q12317	492 aa		4.95	□□□□□ -1.62
BRE4	YDL231C	MRPL32	P25348	183 aa		4.95	□□□□□ -1.62
BRE4	YDL231C	MNN4	P36044	1178 aa		4.95	□□□□□ -1.62
BRE4	YDL231C	RRP8	P38961	392 aa	Known RBP	4.95	□□□□□ -1.62
BRE4	YDL231C	HCA4	P20448	770 aa	Known RBP	4.94	□□□□□ -1.62
BRE4	YDL231C	UBP12	P39538	1254 aa		4.94	□□□□□ -1.62
BRE4	YDL231C	SEN54	Q02825	467 aa	Predicted RBP	4.94	□□□□□ -1.62
BRE4	YDL231C	VPS20	Q04272	221 aa		4.94	□□□□□ -1.62
BRE4	YDL231C	SRS2	P12954	1174 aa		4.94	□□□□□ -1.62
BRE4	YDL231C	UBP1	P25037	809 aa		4.94	□□□□□ -1.62
BRE4	YDL231C	RPN1	P38764	993 aa	Known RBP	4.94	□□□□□ -1.62
BRE4	YDL231C	YIR042C	P40586	236 aa		4.94	□□□□□ -1.62
BRE4	YDL231C	YNL193W	P53870	558 aa		4.94	□□□□□ -1.62
BRE4	YDL231C	RPS19A	P07280	144 aa	Known RBP	4.93	□□□□□ -1.62
BRE4	YDL231C	RPS19B	P07281	144 aa	Predicted RBP	4.93	□□□□□ -1.62
BRE4	YDL231C	YKR023W	P36119	530 aa	Known RBP	4.93	□□□□□ -1.62
BRE4	YDL231C	SAS4	Q04003	481 aa		4.93	□□□□□ -1.62
BRE4	YDL231C	ECM16	Q04217	1267 aa	Known RBP	4.93	□□□□□ -1.62
BRE4	YDL231C	IRC3	Q06683	689 aa		4.93	□□□□□ -1.62
BRE4	YDL231C	CIC1	P38779	376 aa	Known RBP	4.93	□□□□□ -1.62
BRE4	YDL231C	PIB2	P53191	635 aa		4.93	□□□□□ -1.62
BRE4	YDL231C	MDG1	P53885	366 aa		4.93	□□□□□ -1.62
BRE4	YDL231C	SRC1	Q03707	834 aa		4.93	□□□□□ -1.62
BRE4	YDL231C	SSK22	P25390	1331 aa	Predicted RBP	4.93	□□□□□ -1.62
BRE4	YDL231C	NOT3	P06102	836 aa	Known RBP	4.92	□□□□□ -1.62
BRE4	YDL231C	GRX1	P25373	110 aa	Known RBP	4.92	□□□□□ -1.62
BRE4	YDL231C	IME2	P32581	645 aa		4.92	□□□□□ -1.62
BRE4	YDL231C	COG8	Q04632	607 aa		4.92	□□□□□ -1.62
BRE4	YDL231C	RPN7	Q06103	429 aa	Known RBP	4.92	□□□□□ -1.62
BRE4	YDL231C	RIX7	Q07844	837 aa	Known RBP	4.92	□□□□□ -1.62
BRE4	YDL231C	CLC1	P17891	233 aa		4.92	□□□□□ -1.62
BRE4	YDL231C	VPS24	P36095	224 aa	Known RBP	4.92	□□□□□ -1.62
BRE4	YDL231C	YPR204W	Q08995	1032 aa		4.92	□□□□□ -1.62
BRE4	YDL231C	GRE2	Q12068	342 aa	Known RBP	4.92	□□□□□ -1.62
BRE4	YDL231C	SWI1	P09547	1314 aa		4.92	□□□□□ -1.62
BRE4	YDL231C	FRD1	P32614	470 aa	Known RBP	4.91	□□□□□ -1.62
BRE4	YDL231C	BBC1	P47068	1157 aa		4.91	□□□□□ -1.62
BRE4	YDL231C	DID4	P36108	232 aa		4.91	□□□□□ -1.62
BRE4	YDL231C	ECM21	P38167	1117 aa	Known RBP	4.91	□□□□□ -1.62
BRE4	YDL231C	OPY1	P38271	328 aa		4.91	□□□□□ -1.62
BRE4	YDL231C	GCR2	Q01722	534 aa		4.91	□□□□□ -1.62
BRE4	YDL231C	MFT1	P33441	392 aa	Known RBP	4.91	□□□□□ -1.62
BRE4	YDL231C	ARL1	P38116	183 aa	Known RBP	4.91	□□□□□ -1.62
BRE4	YDL231C	ENP2	P48234	707 aa	Known RBP	4.91	□□□□□ -1.62
BRE4	YDL231C	DCD1	P06773	312 aa		4.9	□□□□□ -1.62
BRE4	YDL231C	BIK1	P11709	440 aa		4.9	□□□□□ -1.62
BRE4	YDL231C	MDL2	P33311	773 aa		4.9	□□□□□ -1.62
BRE4	YDL231C	MLC1	P53141	149 aa		4.9	□□□□□ -1.62
BRE4	YDL231C	ALO1	P54783	526 aa	Known RBP	4.9	□□□□□ -1.62
BRE4	YDL231C	RIM20	Q12033	661 aa		4.9	□□□□□ -1.62
BRE4	YDL231C	YKR075C	P36155	307 aa		4.9	□□□□□ -1.63
BRE4	YDL231C	MRPS35	P53292	345 aa		4.9	□□□□□ -1.63
BRE4	YDL231C	BUG1	Q12191	341 aa		4.9	□□□□□ -1.63
BRE4	YDL231C	SEC18	P18759	758 aa	Known RBP	4.9	□□□□□ -1.63
BRE4	YDL231C	YGL242C	P53066	181 aa		4.9	□□□□□ -1.63
BRE4	YDL231C	THI3	Q07471	609 aa		4.9	□□□□□ -1.63
BRE4	YDL231C	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	4.9	□□□□□ -1.63	not detected
BRE4	YDL231C	ARG8	P18544	423 aa		4.89	□□□□□ -1.63
BRE4	YDL231C	SLN1	P39928	1220 aa	Predicted RBP	4.89	□□□□□ -1.63
BRE4	YDL231C	YDR306C	Q06640	478 aa		4.89	□□□□□ -1.63
BRE4	YDL231C	BUD31	P25337	157 aa	Predicted RBP	4.89	□□□□□ -1.63
BRE4	YDL231C	YPR148C	Q06523	435 aa		4.89	□□□□□ -1.63
BRE4	YDL231C	BRE1	Q07457	700 aa	Known RBP	4.89	□□□□□ -1.63
BRE4	YDL231C	SIR4	P11978	1358 aa		4.89	□□□□□ -1.63
BRE4	YDL231C	RNR2	P09938	399 aa	Known RBP	4.88	□□□□□ -1.63
BRE4	YDL231C	SSF1	P38789	453 aa	Predicted RBP	4.88	□□□□□ -1.63
BRE4	YDL231C	EPL1	P43572	832 aa		4.88	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 12.1 ms