RNA–Protein interactions for RNA: NME1

NME1, Transcript of RNA component of RNase MRP, yeastyeast

Gene NME1, Length 340 nt, Biotype snoRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NME1NME1 YBL086CP38177 466 aa12.93□□□□□ -0.34
NME1NME1 ATG1P53104 897 aa12.93□□□□□ -0.34
NME1NME1 DFG5Q05031 458 aa12.93□□□□□ -0.34
NME1NME1 TRL1P09880 827 aaKnown RBP12.92□□□□□ -0.34
NME1NME1 STE6P12866 1290 aa12.92□□□□□ -0.34
NME1NME1 BDS1Q08347 646 aa12.91□□□□□ -0.34
NME1NME1 NGR1P32831 672 aaKnown RBP12.9□□□□□ -0.34
NME1NME1 IPL1P38991 367 aa12.9□□□□□ -0.34
NME1NME1 SUV3P32580 737 aa12.89□□□□□ -0.35
NME1NME1 MSC6Q08818 692 aaKnown RBP12.89□□□□□ -0.35
NME1NME1 WTM2Q12206 467 aa12.89□□□□□ -0.35
NME1NME1 GLO3P38682 493 aaKnown RBP12.88□□□□□ -0.35
NME1NME1 YHL050CP38721 697 aa12.88□□□□□ -0.35
NME1NME1 YHR219WP38900 624 aa12.88□□□□□ -0.35
NME1NME1 MDJ2P42834 146 aa12.88□□□□□ -0.35
NME1NME1 RTT106P40161 455 aa12.86□□□□□ -0.35
NME1NME1 DLD3P39976 496 aaKnown RBP12.85□□□□□ -0.35
NME1NME1 QDR1P40475 563 aa12.85□□□□□ -0.35
NME1NME1 SNU71P53207 620 aaKnown RBP12.84□□□□□ -0.35
NME1NME1 ASF1P32447 279 aa12.83□□□□□ -0.36
NME1NME1 ACF4P47129 309 aa12.83□□□□□ -0.36
NME1NME1 LSO1Q3E827 93 aa12.82□□□□□ -0.36
NME1NME1 PPX1P38698 397 aa12.8□□□□□ -0.36
NME1NME1 FOX2Q02207 900 aaKnown RBP12.8□□□□□ -0.36
NME1NME1 YBR197CP38306 217 aa12.78□□□□□ -0.36
NME1NME1 UTP7P40055 554 aaKnown RBP12.78□□□□□ -0.36
NME1NME1 NOP7P53261 605 aaKnown RBP12.78□□□□□ -0.36
NME1NME1 MET32Q12041 191 aa12.78□□□□□ -0.36
NME1NME1 ISC10P32645 267 aa12.77□□□□□ -0.37
NME1NME1 SUM1P46676 1062 aa12.77□□□□□ -0.37
NME1NME1 CLA4P48562 842 aa12.77□□□□□ -0.37
NME1NME1 CAB1Q04430 367 aa12.77□□□□□ -0.37
NME1NME1 MCM1P11746 286 aa12.76□□□□□ -0.37
NME1NME1 THI12P42883 340 aa12.76□□□□□ -0.37
NME1NME1 THI5P43534 340 aa12.76□□□□□ -0.37
NME1NME1 THI11P47183 340 aa12.76□□□□□ -0.37
NME1NME1 THI13Q07748 340 aa12.76□□□□□ -0.37
NME1NME1 UGA3P26370 528 aa12.75□□□□□ -0.37
NME1NME1 SPR3P41901 512 aa12.75□□□□□ -0.37
NME1NME1 NUT2Q06213 157 aa12.75□□□□□ -0.37
NME1NME1 YPQ2Q06328 317 aa12.75□□□□□ -0.37
NME1NME1 RAS1P01119 309 aa12.72□□□□□ -0.37
NME1NME1 CDC4P07834 779 aa12.72□□□□□ -0.37
NME1NME1 BOI1P38041 980 aaKnown RBP12.72□□□□□ -0.37
NME1NME1 SCD5P34758 872 aa12.71□□□□□ -0.37
NME1NME1 HST3P53687 447 aa12.71□□□□□ -0.37
NME1NME1 FRT1Q99332 602 aa12.71□□□□□ -0.37
NME1NME1 WHI5Q12416 295 aa12.7□□□□□ -0.38
NME1NME1 HXT5P38695 592 aa12.69□□□□□ -0.38
NME1NME1 POL32P47110 350 aa12.69□□□□□ -0.38
NME1NME1 MSB3P48566 633 aaPredicted RBP12.69□□□□□ -0.38
NME1NME1 AFT1P22149 690 aa12.67□□□□□ -0.38
NME1NME1 ALA1P40825 983 aaKnown RBP12.67□□□□□ -0.38
NME1NME1 ARG82P07250 355 aa12.66□□□□□ -0.38
NME1NME1 TRS120Q04183 1289 aa12.66□□□□□ -0.38
NME1NME1 APC11Q12157 165 aa12.66□□□□□ -0.38
NME1NME1 MRPL33P20084 86 aa12.65□□□□□ -0.38
NME1NME1 ASH1P34233 588 aa12.65□□□□□ -0.38
NME1NME1 AIR1P40507 360 aaKnown RBP12.65□□□□□ -0.38
NME1NME1 AAD14P42884 376 aa12.63□□□□□ -0.39
NME1NME1 UFD2P54860 961 aa12.63□□□□□ -0.39
NME1NME1 RPB10P22139 70 aa12.62□□□□□ -0.39
NME1NME1 RRP15Q06511 250 aaPredicted RBP12.61□□□□□ -0.39
NME1NME1 ALD2P47771 506 aa12.6□□□□□ -0.39
NME1NME1 SUT1P53032 299 aaKnown RBP12.6□□□□□ -0.39
NME1NME1 UTP4Q06679 776 aaKnown RBP12.6□□□□□ -0.39
NME1NME1 ATE1P16639 503 aa12.59□□□□□ -0.39
NME1NME1 MGE1P38523 228 aa12.59□□□□□ -0.39
NME1NME1 SRF1Q12516 437 aa12.59□□□□□ -0.39
NME1NME1 Q0182Q9ZZW1 134 aa12.59□□□□□ -0.39
NME1NME1 PAM1P37304 830 aaKnown RBP12.58□□□□□ -0.4
NME1NME1 SSN3P39073 555 aa12.57□□□□□ -0.4
NME1NME1 MSN5P52918 1224 aa12.57□□□□□ -0.4
NME1NME1 MET4P32389 672 aa12.56□□□□□ -0.4
NME1NME1 MET10P39692 1035 aa12.56□□□□□ -0.4
NME1NME1 DPS1P04802 557 aaKnown RBP12.55□□□□□ -0.4
NME1NME1 VMA3P25515 160 aa12.55□□□□□ -0.4
NME1NME1 PTK2P47116 818 aaKnown RBP12.55□□□□□ -0.4
NME1NME1 AHP1P38013 176 aaKnown RBP12.54□□□□□ -0.4
NME1NME1 YTA6P40328 754 aa12.54□□□□□ -0.4
NME1NME1 JJJ2P46997 583 aa12.54□□□□□ -0.4
NME1NME1 MLF3P32047 452 aa12.53□□□□□ -0.4
NME1NME1 SMC1P32908 1225 aa12.53□□□□□ -0.4
NME1NME1 LDH1P38139 375 aa12.53□□□□□ -0.4
NME1NME1 YNL165WP53891 406 aa12.53□□□□□ -0.4
NME1NME1 HXT8P40886 569 aa12.52□□□□□ -0.41
NME1NME1 DYS1P38791 387 aa12.51□□□□□ -0.41
NME1NME1 KTR2P33550 425 aa12.5□□□□□ -0.41
NME1NME1 GPI13Q07830 1017 aa12.5□□□□□ -0.41
NME1NME1 DLD1P32891 587 aa12.49□□□□□ -0.41
NME1NME1 YJR115WP47152 169 aa12.49□□□□□ -0.41
NME1NME1 MNL2Q12205 849 aa12.49□□□□□ -0.41
NME1NME1 QDR2P40474 542 aa12.48□□□□□ -0.41
NME1NME1 OYE2Q03558 400 aaKnown RBP12.48□□□□□ -0.41
NME1NME1 IRE1P32361 1115 aa12.47□□□□□ -0.41
NME1NME1 SEC8P32855 1065 aa12.47□□□□□ -0.41
NME1NME1 RGA1P39083 1007 aa12.47□□□□□ -0.41
NME1NME1 FIR1P40020 876 aa12.47□□□□□ -0.41
NME1NME1 SHM1P37292 490 aaPredicted RBP12.46□□□□□ -0.41
NME1NME1 YJR107WP47145 328 aa12.46□□□□□ -0.41
Retrieved 100 of 5,963 RNA–protein pairs in 13.7 ms