RNA–Protein interactions for RNA: ENST00000640499.1

VEGFA-231, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VEGFA, Length 1,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-231ENST00000640499 CERKQ8TCT0 537 aa39.56■■■■□ 3.92
VEGFA-231ENST00000640499 NUTM2DQ5VT03 806 aaPredicted RBP39.55■■■■□ 3.92
VEGFA-231ENST00000640499 KIF1BO60333 1816 aa39.54■■■■□ 3.92
VEGFA-231ENST00000640499 TRIM26Q12899 539 aaPredicted RBP39.51■■■■□ 3.92
VEGFA-231ENST00000640499 PLEKHG1Q9ULL1 1385 aa39.49■■■■□ 3.91
VEGFA-231ENST00000640499 HDGFP51858 240 aaKnown RBP39.48■■■■□ 3.91
VEGFA-231ENST00000640499 ABCF1Q8NE71 845 aaKnown RBP eCLIP39.48■■■■□ 3.91
VEGFA-231ENST00000640499 SENP3Q9H4L4 574 aaPredicted RBP39.48■■■■□ 3.91
VEGFA-231ENST00000640499 STRCP1A6NGW2 1772 aa39.47■■■■□ 3.91
VEGFA-231ENST00000640499 ZNF326Q5BKZ1 582 aaKnown RBP39.46■■■■□ 3.91
VEGFA-231ENST00000640499 SLC26A8Q96RN1 970 aa39.46■■■■□ 3.91
VEGFA-231ENST00000640499 CCDC144AA2RUR9 1427 aa39.46■■■■□ 3.91
VEGFA-231ENST00000640499 NEXMIFQ5QGS0 1516 aa39.45■■■■□ 3.91
VEGFA-231ENST00000640499 PPP1R15AO75807 674 aaPredicted RBP39.44■■■■□ 3.9
VEGFA-231ENST00000640499 ANKRD30BQ9BXX2 1392 aa39.43■■■■□ 3.9
VEGFA-231ENST00000640499 SPATA31E1Q6ZUB1 1445 aa39.41■■■■□ 3.9
VEGFA-231ENST00000640499 ADAMTS13Q76LX8 1427 aa39.39■■■■□ 3.9
VEGFA-231ENST00000640499 ILDR1Q86SU0 546 aaPredicted RBP39.36■■■■□ 3.89
VEGFA-231ENST00000640499 BCANQ96GW7 911 aa39.35■■■■□ 3.89
VEGFA-231ENST00000640499 CPS1P31327 1500 aa39.35■■■■□ 3.89
VEGFA-231ENST00000640499 NRXN3Q9Y4C0 1643 aa39.33■■■■□ 3.89
VEGFA-231ENST00000640499 TBX22Q9Y458 520 aa39.32■■■■□ 3.89
VEGFA-231ENST00000640499 RPGRIP1LQ68CZ1 1315 aa39.31■■■■□ 3.88
VEGFA-231ENST00000640499 PPLO60437 1756 aa39.3■■■■□ 3.88
VEGFA-231ENST00000640499 RGL3Q3MIN7 710 aa39.29■■■■□ 3.88
VEGFA-231ENST00000640499 IQSEC2Q5JU85 1478 aa39.28■■■■□ 3.88
VEGFA-231ENST00000640499 SETBP1Q9Y6X0 1596 aa39.28■■■■□ 3.88
VEGFA-231ENST00000640499 FBXO41Q8TF61 875 aa39.27■■■■□ 3.88
VEGFA-231ENST00000640499 KCNA6P17658 529 aa39.26■■■■□ 3.88
VEGFA-231ENST00000640499 LRRC7Q96NW7 1537 aa39.25■■■■□ 3.87
VEGFA-231ENST00000640499 DIP2AQ14689 1571 aa39.22■■■■□ 3.87
VEGFA-231ENST00000640499 CHD2O14647 1828 aaKnown RBP39.22■■■■□ 3.87
VEGFA-231ENST00000640499 VGFO15240 615 aaPredicted RBP39.22■■■■□ 3.87
VEGFA-231ENST00000640499 IFT172Q9UG01 1749 aa39.22■■■■□ 3.87
VEGFA-231ENST00000640499 NWD1Q149M9 1564 aa39.21■■■■□ 3.87
VEGFA-231ENST00000640499 ADGRF5Q8IZF2 1346 aa39.17■■■■□ 3.86
VEGFA-231ENST00000640499 PTPRUQ92729 1446 aa39.16■■■■□ 3.86
VEGFA-231ENST00000640499 XIRP1Q702N8 1843 aaKnown RBP39.15■■■■□ 3.86
VEGFA-231ENST00000640499 METP08581 1390 aa39.14■■■■□ 3.86
VEGFA-231ENST00000640499 PIK3R4Q99570 1358 aa39.14■■■■□ 3.86
VEGFA-231ENST00000640499 SETD1AO15047 1707 aaKnown RBP39.11■■■■□ 3.85
VEGFA-231ENST00000640499 DHX57Q6P158 1386 aaKnown RBP39.09■■■■□ 3.85
VEGFA-231ENST00000640499 ALKQ9UM73 1620 aa39.08■■■■□ 3.85
VEGFA-231ENST00000640499 RBM33Q96EV2 1170 aaKnown RBP39.08■■■■□ 3.85
VEGFA-231ENST00000640499 NKTRP30414 1462 aaKnown RBP39.08■■■■□ 3.85
VEGFA-231ENST00000640499 TMEM94Q12767 1356 aa39.06■■■■□ 3.84
VEGFA-231ENST00000640499 PROSER2Q86WR7 435 aaPredicted RBP39.05■■■■□ 3.84
VEGFA-231ENST00000640499 AMOTL2Q9Y2J4 779 aa39.05■■■■□ 3.84
VEGFA-231ENST00000640499 NRXN1Q9ULB1 1477 aa39.02■■■■□ 3.84
VEGFA-231ENST00000640499 XRN1Q8IZH2 1706 aaKnown RBP39.01■■■■□ 3.84
VEGFA-231ENST00000640499 UBAP1LF5GYI3 381 aa39.01■■■■□ 3.84
VEGFA-231ENST00000640499 MYOM2P54296 1465 aa39■■■■□ 3.83
VEGFA-231ENST00000640499 PIK3C2GO75747 1445 aa39■■■■□ 3.83
VEGFA-231ENST00000640499 SIN3AQ96ST3 1273 aa38.95■■■■□ 3.83
VEGFA-231ENST00000640499 PCGF6Q9BYE7 350 aa38.95■■■■□ 3.83
VEGFA-231ENST00000640499 DCAF11Q8TEB1 546 aa38.92■■■■□ 3.82
VEGFA-231ENST00000640499 ASXL1Q8IXJ9 1541 aa38.9■■■■□ 3.82
VEGFA-231ENST00000640499 C14orf93Q9H972 538 aaKnown RBP38.9■■■■□ 3.82
VEGFA-231ENST00000640499 KDM2AQ9Y2K7 1162 aa38.9■■■■□ 3.82
VEGFA-231ENST00000640499 TOM1O60784 492 aa38.88■■■■□ 3.81
VEGFA-231ENST00000640499 CFAP70Q5T0N1 1121 aa38.86■■■■□ 3.81
VEGFA-231ENST00000640499 NCOA3Q9Y6Q9 1424 aa38.86■■■■□ 3.81
VEGFA-231ENST00000640499 TMEM132EQ6IEE7 984 aa38.85■■■■□ 3.81
VEGFA-231ENST00000640499 PRAG1Q86YV5 1406 aa38.83■■■■□ 3.81
VEGFA-231ENST00000640499 ROBO2Q9HCK4 1378 aa38.82■■■■□ 3.8
VEGFA-231ENST00000640499 PIP4K2BP78356 416 aa38.8■■■■□ 3.8
VEGFA-231ENST00000640499 STAC3Q96MF2 364 aa38.8■■■■□ 3.8
VEGFA-231ENST00000640499 NEUROD1Q13562 356 aa38.78■■■■□ 3.8
VEGFA-231ENST00000640499 PTCH1Q13635 1447 aa38.78■■■■□ 3.8
VEGFA-231ENST00000640499 MSH6P52701 1360 aa38.77■■■■□ 3.8
VEGFA-231ENST00000640499 LRPPRCP42704 1394 aaKnown RBP38.76■■■■□ 3.8
VEGFA-231ENST00000640499 LAMC1P11047 1609 aa38.75■■■■□ 3.79
VEGFA-231ENST00000640499 SIPA1L2Q9P2F8 1722 aaPredicted RBP38.75■■■■□ 3.79
VEGFA-231ENST00000640499 L3MBTL2Q969R5 705 aa38.74■■■■□ 3.79
VEGFA-231ENST00000640499 C19orf44Q9H6X5 657 aa38.73■■■■□ 3.79
VEGFA-231ENST00000640499 STK26Q9P289 416 aa38.73■■■■□ 3.79
VEGFA-231ENST00000640499 TECPR2O15040 1411 aa38.72■■■■□ 3.79
VEGFA-231ENST00000640499 ABCC11Q96J66 1382 aa38.72■■■■□ 3.79
VEGFA-231ENST00000640499 YTHDC2Q9H6S0 1430 aaKnown RBP38.72■■■■□ 3.79
VEGFA-231ENST00000640499 ADGRB1O14514 1584 aa38.71■■■■□ 3.79
VEGFA-231ENST00000640499 C14orf37Q86TY3 774 aa38.7■■■■□ 3.79
VEGFA-231ENST00000640499 SCAF1Q9H7N4 1312 aaKnown RBP38.69■■■■□ 3.78
VEGFA-231ENST00000640499 KNDC1Q76NI1 1749 aa38.67■■■■□ 3.78
VEGFA-231ENST00000640499 NALCNQ8IZF0 1738 aa38.66■■■■□ 3.78
VEGFA-231ENST00000640499 ADGRL3Q9HAR2 1447 aa38.64■■■■□ 3.78
VEGFA-231ENST00000640499 WAPLQ7Z5K2 1190 aa38.64■■■■□ 3.78
VEGFA-231ENST00000640499 SLAIN2Q9P270 581 aa38.64■■■■□ 3.78
VEGFA-231ENST00000640499 PLEKHH1Q9ULM0 1364 aa38.63■■■■□ 3.77
VEGFA-231ENST00000640499 FAM135BQ49AJ0 1406 aa38.61■■■■□ 3.77
VEGFA-231ENST00000640499 CADPS2Q86UW7 1296 aa38.6■■■■□ 3.77
VEGFA-231ENST00000640499 HSPA1LP34931 641 aa38.59■■■■□ 3.77
VEGFA-231ENST00000640499 DCCP43146 1447 aa38.59■■■■□ 3.77
VEGFA-231ENST00000640499 SIRT1Q96EB6 747 aa38.59■■■■□ 3.77
VEGFA-231ENST00000640499 ATF3P18847 181 aa38.58■■■■□ 3.77
VEGFA-231ENST00000640499 ROBO1Q9Y6N7 1651 aa38.55■■■■□ 3.76
VEGFA-231ENST00000640499 KIAA1210Q9ULL0 1709 aa38.55■■■■□ 3.76
VEGFA-231ENST00000640499 NBPF1Q3BBV0 1214 aa38.54■■■■□ 3.76
VEGFA-231ENST00000640499 MST1RQ04912 1400 aa38.52■■■■□ 3.76
VEGFA-231ENST00000640499 DLC1Q96QB1 1528 aa38.52■■■■□ 3.76
VEGFA-231ENST00000640499 TRAK1Q9UPV9 953 aa38.5■■■■□ 3.75
Retrieved 100 of 20,778 RNA–protein pairs in 165.2 ms