RNA–Protein interactions for RNA: ENST00000625716.2

TCF4-249, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 359 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-249ENST00000625716 CCNB3Q8WWL7 1395 aa10.08□□□□□ -0.8
TCF4-249ENST00000625716 MAGI2Q86UL8 1455 aa10.08□□□□□ -0.8
TCF4-249ENST00000625716 FRMPD1Q5SYB0 1578 aa10.08□□□□□ -0.8
TCF4-249ENST00000625716 POGZQ7Z3K3 1410 aa10.07□□□□□ -0.8
TCF4-249ENST00000625716 ZSWIM6Q9HCJ5 1215 aa10.07□□□□□ -0.8
TCF4-249ENST00000625716 CFDP1Q9UEE9 299 aaPredicted RBP10.07□□□□□ -0.8
TCF4-249ENST00000625716 RICTORQ6R327 1708 aa10.07□□□□□ -0.8
TCF4-249ENST00000625716 ZNF518AQ6AHZ1 1483 aa10.06□□□□□ -0.8
TCF4-249ENST00000625716 MMRN1Q13201 1228 aa10.06□□□□□ -0.8
TCF4-249ENST00000625716 AFAP1Q8N556 730 aa10.06□□□□□ -0.8
TCF4-249ENST00000625716 KHSRPQ92945 711 aaKnown RBP eCLIP10.06□□□□□ -0.82e-6■■■□□ 18.7
TCF4-249ENST00000625716 ZFYVE16Q7Z3T8 1539 aa10.06□□□□□ -0.8
TCF4-249ENST00000625716 VPS8Q8N3P4 1428 aa10.06□□□□□ -0.8
TCF4-249ENST00000625716 RIMBP2O15034 1052 aa10.05□□□□□ -0.8
TCF4-249ENST00000625716 ARSIQ5FYB1 569 aa10.05□□□□□ -0.8
TCF4-249ENST00000625716 ZMYM4Q5VZL5 1548 aa10.05□□□□□ -0.8
TCF4-249ENST00000625716 ERBB3P21860 1342 aa10.05□□□□□ -0.8
TCF4-249ENST00000625716 PREX2Q70Z35 1606 aa10.04□□□□□ -0.8
TCF4-249ENST00000625716 EHBP1L1Q8N3D4 1523 aa10.04□□□□□ -0.8
TCF4-249ENST00000625716 ARHGEF40Q8TER5 1519 aa10.04□□□□□ -0.8
TCF4-249ENST00000625716 NKX1-1Q15270 411 aaPredicted RBP10.04□□□□□ -0.8
TCF4-249ENST00000625716 YEATS2Q9ULM3 1422 aa10.04□□□□□ -0.8
TCF4-249ENST00000625716 GPATCH8Q9UKJ3 1502 aaKnown RBP10.03□□□□□ -0.8
TCF4-249ENST00000625716 CHGAP10645 457 aaKnown RBP10.03□□□□□ -0.8
TCF4-249ENST00000625716 MLECQ14165 292 aa10.03□□□□□ -0.8
TCF4-249ENST00000625716 VARS2Q5ST30 1063 aaKnown RBP10.03□□□□□ -0.8
TCF4-249ENST00000625716 CDC42BPBQ9Y5S2 1711 aa10.03□□□□□ -0.8
TCF4-249ENST00000625716 ATP10AO60312 1499 aa10.03□□□□□ -0.8
TCF4-249ENST00000625716 HNRNPMP52272 730 aaKnown RBP eCLIP10.02□□□□□ -0.817e-6■■■□□ 17
TCF4-249ENST00000625716 C9orf84Q5VXU9 1444 aa10.01□□□□□ -0.81
TCF4-249ENST00000625716 PLEKHH2Q8IVE3 1493 aa10.01□□□□□ -0.81
TCF4-249ENST00000625716 CDC42BPAQ5VT25 1732 aa10.01□□□□□ -0.81
TCF4-249ENST00000625716 ABCC1P33527 1531 aa10.01□□□□□ -0.81
TCF4-249ENST00000625716 SPAG9O60271 1321 aaKnown RBP10.01□□□□□ -0.81
TCF4-249ENST00000625716 TRAPPC8Q9Y2L5 1435 aa10□□□□□ -0.81
TCF4-249ENST00000625716 TIAM1Q13009 1591 aa10□□□□□ -0.81
TCF4-249ENST00000625716 MLH3Q9UHC1 1453 aa9.99□□□□□ -0.81
TCF4-249ENST00000625716 ARHGEF12Q9NZN5 1544 aa9.99□□□□□ -0.81
TCF4-249ENST00000625716 ESF1Q9H501 851 aaKnown RBP9.99□□□□□ -0.81
TCF4-249ENST00000625716 KDM5CP41229 1560 aa9.99□□□□□ -0.81
TCF4-249ENST00000625716 HECW2Q9P2P5 1572 aa9.99□□□□□ -0.81
TCF4-249ENST00000625716 BCORL1Q5H9F3 1711 aa9.99□□□□□ -0.81
TCF4-249ENST00000625716 KIAA1107Q9UPP5 1409 aa9.99□□□□□ -0.81
TCF4-249ENST00000625716 NCOA2Q15596 1464 aa9.98□□□□□ -0.81
TCF4-249ENST00000625716 SAMD9LQ8IVG5 1584 aa9.98□□□□□ -0.81
TCF4-249ENST00000625716 ADAMTSL3P82987 1691 aa9.98□□□□□ -0.81
TCF4-249ENST00000625716 ITSN2Q9NZM3 1697 aa9.98□□□□□ -0.81
TCF4-249ENST00000625716 SUPT6HQ7KZ85 1726 aaKnown RBP9.98□□□□□ -0.81
TCF4-249ENST00000625716 PTPRMP28827 1452 aa9.98□□□□□ -0.81
TCF4-249ENST00000625716 LRRC9Q6ZRR7 1453 aa9.98□□□□□ -0.81
TCF4-249ENST00000625716 SYCP2Q9BX26 1530 aa9.97□□□□□ -0.81
TCF4-249ENST00000625716 ZNF644Q9H582 1327 aaPredicted RBP9.97□□□□□ -0.81
TCF4-249ENST00000625716 SLC34A2O95436 690 aa9.96□□□□□ -0.82
TCF4-249ENST00000625716 KANK4Q5T7N3 995 aaPredicted RBP9.96□□□□□ -0.82
TCF4-249ENST00000625716 RSPH4AQ5TD94 716 aa9.96□□□□□ -0.82
TCF4-249ENST00000625716 ZNF687Q8N1G0 1237 aa9.96□□□□□ -0.82
TCF4-249ENST00000625716 TMC2Q8TDI7 906 aa9.96□□□□□ -0.82
TCF4-249ENST00000625716 MAP3K1Q13233 1512 aa9.96□□□□□ -0.82
TCF4-249ENST00000625716 MADDQ8WXG6 1647 aa9.96□□□□□ -0.82
TCF4-249ENST00000625716 DIP2CQ9Y2E4 1556 aa9.94□□□□□ -0.82
TCF4-249ENST00000625716 ZNF316A6NFI3 1004 aaPredicted RBP9.94□□□□□ -0.82
TCF4-249ENST00000625716 TSPY4P0CV99 314 aa9.94□□□□□ -0.82
TCF4-249ENST00000625716 TSPY10P0CW01 314 aa9.94□□□□□ -0.82
TCF4-249ENST00000625716 PCDHGA4Q9Y5G9 962 aa9.94□□□□□ -0.82
TCF4-249ENST00000625716 RIMS1Q86UR5 1692 aaKnown RBP9.93□□□□□ -0.82
TCF4-249ENST00000625716 NUDT7P0C024 238 aa9.93□□□□□ -0.82
TCF4-249ENST00000625716 ABCA6Q8N139 1617 aa9.93□□□□□ -0.82
TCF4-249ENST00000625716 REREQ9P2R6 1566 aa9.92□□□□□ -0.82
TCF4-249ENST00000625716 ATP7AQ04656 1500 aa9.92□□□□□ -0.82
TCF4-249ENST00000625716 CAMSAP2Q08AD1 1489 aa9.91□□□□□ -0.82
TCF4-249ENST00000625716 KIDINS220Q9ULH0 1771 aa9.91□□□□□ -0.82
TCF4-249ENST00000625716 SIGLEC1Q9BZZ2 1709 aa9.91□□□□□ -0.82
TCF4-249ENST00000625716 AGLP35573 1532 aa9.91□□□□□ -0.82
TCF4-249ENST00000625716 CCDC141Q6ZP82 1450 aa9.91□□□□□ -0.82
TCF4-249ENST00000625716 MBD5Q9P267 1494 aa9.91□□□□□ -0.82
TCF4-249ENST00000625716 RTEL1-TNFRSF6BF6WH68 1400 aa9.9□□□□□ -0.82
TCF4-249ENST00000625716 CEBPAP49715 358 aaPredicted RBP9.9□□□□□ -0.82
TCF4-249ENST00000625716 GGT6Q6P531 493 aa9.9□□□□□ -0.82
TCF4-249ENST00000625716 GPHNQ9NQX3 736 aaPredicted RBP9.9□□□□□ -0.82
TCF4-249ENST00000625716 FER1L4A9Z1Z3 1794 aa9.9□□□□□ -0.82
TCF4-249ENST00000625716 A2MP01023 1474 aa9.9□□□□□ -0.83
TCF4-249ENST00000625716 MYOM3Q5VTT5 1437 aa9.9□□□□□ -0.83
TCF4-249ENST00000625716 MIA2Q96PC5 1412 aa9.9□□□□□ -0.83
TCF4-249ENST00000625716 FOXK1P85037 733 aa9.89□□□□□ -0.83
TCF4-249ENST00000625716 LHX6Q9UPM6 363 aa9.89□□□□□ -0.83
TCF4-249ENST00000625716 INO80Q9ULG1 1556 aaPredicted RBP9.88□□□□□ -0.83
TCF4-249ENST00000625716 DSG2Q14126 1118 aa9.88□□□□□ -0.83
TCF4-249ENST00000625716 POTEEQ6S8J3 1075 aa9.88□□□□□ -0.83
TCF4-249ENST00000625716 PLPP6Q8IY26 295 aa9.88□□□□□ -0.83
TCF4-249ENST00000625716 CNTLNQ9NXG0 1405 aa9.88□□□□□ -0.83
TCF4-249ENST00000625716 PTCD2Q8WV60 388 aaKnown RBP9.87□□□□□ -0.83
TCF4-249ENST00000625716 DHX29Q7Z478 1369 aaKnown RBP9.87□□□□□ -0.83
TCF4-249ENST00000625716 KIF3BO15066 747 aa9.86□□□□□ -0.83
TCF4-249ENST00000625716 GTPBP6O43824 516 aaPredicted RBP9.86□□□□□ -0.83
TCF4-249ENST00000625716 ARHGEF5Q12774 1597 aa9.86□□□□□ -0.83
TCF4-249ENST00000625716 ADGBQ8N7X0 1667 aa9.86□□□□□ -0.83
TCF4-249ENST00000625716 HSPA2P54652 639 aa9.85□□□□□ -0.83
TCF4-249ENST00000625716 LMTK3Q96Q04 1460 aa9.84□□□□□ -0.83
TCF4-249ENST00000625716 FAM50AQ14320 339 aaKnown RBP9.83□□□□□ -0.84
TCF4-249ENST00000625716 CRISPLD2Q9H0B8 497 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms