RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 PER1O15534 1290 aaPredicted RBP29.01■■■□□ 2.23
LIME1-210ENST00000621325 MYOM2P54296 1465 aa28.99■■■□□ 2.23
LIME1-210ENST00000621325 DIP2BQ9P265 1576 aa28.98■■■□□ 2.23
LIME1-210ENST00000621325 PANK3Q9H999 370 aa28.96■■■□□ 2.23
LIME1-210ENST00000621325 ADGRB3O60242 1522 aa28.96■■■□□ 2.23
LIME1-210ENST00000621325 RALBP1Q15311 655 aa28.96■■■□□ 2.23
LIME1-210ENST00000621325 IFT172Q9UG01 1749 aa28.95■■■□□ 2.23
LIME1-210ENST00000621325 TMC1Q8TDI8 760 aa28.95■■■□□ 2.22
LIME1-210ENST00000621325 BCANQ96GW7 911 aa28.95■■■□□ 2.22
LIME1-210ENST00000621325 MYBBP1AQ9BQG0 1328 aaKnown RBP28.94■■■□□ 2.22
LIME1-210ENST00000621325 CAMSAP1Q5T5Y3 1602 aa28.94■■■□□ 2.22
LIME1-210ENST00000621325 ZBED9Q6R2W3 1325 aa28.94■■■□□ 2.22
LIME1-210ENST00000621325 PNISRQ8TF01 805 aaKnown RBP28.94■■■□□ 2.22
LIME1-210ENST00000621325 KIAA1210Q9ULL0 1709 aa28.94■■■□□ 2.22
LIME1-210ENST00000621325 NOS1P29475 1434 aa28.94■■■□□ 2.22
LIME1-210ENST00000621325 KTN1Q86UP2 1357 aaKnown RBP28.93■■■□□ 2.22
LIME1-210ENST00000621325 SIGLEC1Q9BZZ2 1709 aa28.92■■■□□ 2.22
LIME1-210ENST00000621325 TSPOAP1O95153 1857 aa28.91■■■□□ 2.22
LIME1-210ENST00000621325 NEFLP07196 543 aa28.91■■■□□ 2.22
LIME1-210ENST00000621325 PARD3Q8TEW0 1356 aa28.9■■■□□ 2.22
LIME1-210ENST00000621325 NRXN1Q9ULB1 1477 aa28.9■■■□□ 2.22
LIME1-210ENST00000621325 CC2D1BQ5T0F9 858 aaKnown RBP28.88■■■□□ 2.21
LIME1-210ENST00000621325 BRD4O60885 1362 aaPredicted RBP28.88■■■□□ 2.21
LIME1-210ENST00000621325 EIF3AQ14152 1382 aaKnown RBP28.86■■■□□ 2.21
LIME1-210ENST00000621325 SENP3-EIF4A1A0A087X0R7 540 aa28.86■■■□□ 2.21
LIME1-210ENST00000621325 SYNMO15061 1565 aa28.84■■■□□ 2.21
LIME1-210ENST00000621325 ZMYM4Q5VZL5 1548 aa28.83■■■□□ 2.21
LIME1-210ENST00000621325 PPLO60437 1756 aa28.82■■■□□ 2.2
LIME1-210ENST00000621325 NLRP13Q86W25 1043 aa28.81■■■□□ 2.2
LIME1-210ENST00000621325 ARHGAP31Q2M1Z3 1444 aa28.81■■■□□ 2.2
LIME1-210ENST00000621325 PIK3C2GO75747 1445 aa28.8■■■□□ 2.2
LIME1-210ENST00000621325 NUTM2DQ5VT03 806 aaPredicted RBP28.8■■■□□ 2.2
LIME1-210ENST00000621325 CDCA8Q53HL2 280 aa28.79■■■□□ 2.2
LIME1-210ENST00000621325 PIK3C2BO00750 1634 aa28.79■■■□□ 2.2
LIME1-210ENST00000621325 LRPPRCP42704 1394 aaKnown RBP28.79■■■□□ 2.2
LIME1-210ENST00000621325 ZC3H13Q5T200 1668 aaKnown RBP28.78■■■□□ 2.2
LIME1-210ENST00000621325 IDI1Q13907 227 aa28.78■■■□□ 2.2
LIME1-210ENST00000621325 RPGRIP1LQ68CZ1 1315 aa28.77■■■□□ 2.2
LIME1-210ENST00000621325 C14orf93Q9H972 538 aaKnown RBP28.77■■■□□ 2.2
LIME1-210ENST00000621325 IRX6P78412 446 aaPredicted RBP28.75■■■□□ 2.19
LIME1-210ENST00000621325 TMEM132EQ6IEE7 984 aa28.74■■■□□ 2.19
LIME1-210ENST00000621325 ERVK-7P63135 1459 aa28.74■■■□□ 2.19
LIME1-210ENST00000621325 TRAK1Q9UPV9 953 aa28.73■■■□□ 2.19
LIME1-210ENST00000621325 KNSTRNQ9Y448 316 aa28.72■■■□□ 2.19
LIME1-210ENST00000621325 SETBP1Q9Y6X0 1596 aa28.72■■■□□ 2.19
LIME1-210ENST00000621325 MYOM1P52179 1685 aa28.72■■■□□ 2.19
LIME1-210ENST00000621325 FBXO31Q5XUX0 539 aaPredicted RBP28.7■■■□□ 2.19
LIME1-210ENST00000621325 ADGRB1O14514 1584 aa28.7■■■□□ 2.18
LIME1-210ENST00000621325 AMER1Q5JTC6 1135 aaPredicted RBP28.69■■■□□ 2.18
LIME1-210ENST00000621325 NEXMIFQ5QGS0 1516 aa28.69■■■□□ 2.18
LIME1-210ENST00000621325 KDM5AP29375 1690 aaKnown RBP28.68■■■□□ 2.18
LIME1-210ENST00000621325 CENPJQ9HC77 1338 aaPredicted RBP28.68■■■□□ 2.18
LIME1-210ENST00000621325 SLC52A1Q9NWF4 448 aa28.68■■■□□ 2.18
LIME1-210ENST00000621325 PREX1Q8TCU6 1659 aa28.67■■■□□ 2.18
LIME1-210ENST00000621325 MYO3AQ8NEV4 1616 aa28.66■■■□□ 2.18
LIME1-210ENST00000621325 VGFO15240 615 aaPredicted RBP28.65■■■□□ 2.18
LIME1-210ENST00000621325 SENP3Q9H4L4 574 aaPredicted RBP28.65■■■□□ 2.18
LIME1-210ENST00000621325 SMG6Q86US8 1419 aaKnown RBP28.64■■■□□ 2.17
LIME1-210ENST00000621325 KIF13AQ9H1H9 1805 aa28.63■■■□□ 2.17
LIME1-210ENST00000621325 SLC24A1O60721 1099 aa28.63■■■□□ 2.17
LIME1-210ENST00000621325 SBNO2Q9Y2G9 1366 aa28.63■■■□□ 2.17
LIME1-210ENST00000621325 REREQ9P2R6 1566 aa28.61■■■□□ 2.17
LIME1-210ENST00000621325 ASXL1Q8IXJ9 1541 aa28.6■■■□□ 2.17
LIME1-210ENST00000621325 MYO5BQ9ULV0 1848 aa28.6■■■□□ 2.17
LIME1-210ENST00000621325 MLECQ14165 292 aa28.6■■■□□ 2.17
LIME1-210ENST00000621325 TSHZ2Q9NRE2 1034 aa28.6■■■□□ 2.17
LIME1-210ENST00000621325 AGLP35573 1532 aa28.59■■■□□ 2.17
LIME1-210ENST00000621325 NUDCQ9Y266 331 aa28.59■■■□□ 2.17
LIME1-210ENST00000621325 PPP2R1AP30153 589 aa28.59■■■□□ 2.17
LIME1-210ENST00000621325 TMEM131LA2VDJ0 1609 aa28.58■■■□□ 2.17
LIME1-210ENST00000621325 ERICH6Q7L0X2 663 aa28.58■■■□□ 2.17
LIME1-210ENST00000621325 CARD14Q9BXL6 1004 aa28.57■■■□□ 2.16
LIME1-210ENST00000621325 SALL2Q9Y467 1007 aaPredicted RBP28.57■■■□□ 2.16
LIME1-210ENST00000621325 QRICH2Q9H0J4 1663 aa28.56■■■□□ 2.16
LIME1-210ENST00000621325 ZFYVE9O95405 1425 aa28.53■■■□□ 2.16
LIME1-210ENST00000621325 CLTCQ00610 1675 aaKnown RBP28.53■■■□□ 2.16
LIME1-210ENST00000621325 NPC1L1Q9UHC9 1359 aa28.52■■■□□ 2.16
LIME1-210ENST00000621325 PPP6R1Q9UPN7 881 aa28.51■■■□□ 2.15
LIME1-210ENST00000621325 ARHGEF40Q8TER5 1519 aa28.49■■■□□ 2.15
LIME1-210ENST00000621325 SLC12A5Q9H2X9 1139 aa28.48■■■□□ 2.15
LIME1-210ENST00000621325 STK26Q9P289 416 aa28.48■■■□□ 2.15
LIME1-210ENST00000621325 BLMP54132 1417 aaPredicted RBP28.48■■■□□ 2.15
LIME1-210ENST00000621325 ARHGEF28Q8N1W1 1705 aaKnown RBP28.47■■■□□ 2.15
LIME1-210ENST00000621325 STAG3Q9UJ98 1225 aa28.47■■■□□ 2.15
LIME1-210ENST00000621325 ADAMTS8Q9UP79 889 aa28.47■■■□□ 2.15
LIME1-210ENST00000621325 SAFB2Q14151 953 aaKnown RBP eCLIP28.46■■■□□ 2.15
LIME1-210ENST00000621325 INSRP06213 1382 aa28.43■■■□□ 2.14
LIME1-210ENST00000621325 ERICH6BQ5W0A0 696 aa28.42■■■□□ 2.14
LIME1-210ENST00000621325 TULP4Q9NRJ4 1543 aa28.41■■■□□ 2.14
LIME1-210ENST00000621325 SPATA31D1Q6ZQQ2 1576 aa28.41■■■□□ 2.14
LIME1-210ENST00000621325 NSD3Q9BZ95 1437 aa28.4■■■□□ 2.14
LIME1-210ENST00000621325 RNF123Q5XPI4 1314 aa28.39■■■□□ 2.14
LIME1-210ENST00000621325 EVC2Q86UK5 1308 aa28.39■■■□□ 2.14
LIME1-210ENST00000621325 CDCA7LQ96GN5 454 aa28.39■■■□□ 2.13
LIME1-210ENST00000621325 WDR43Q15061 677 aaKnown RBP eCLIP28.38■■■□□ 2.13
LIME1-210ENST00000621325 CABP2Q9NPB3 220 aa28.38■■■□□ 2.13
LIME1-210ENST00000621325 PPP4R2Q9NY27 417 aa28.38■■■□□ 2.13
LIME1-210ENST00000621325 A2ML1A8K2U0 1454 aa28.37■■■□□ 2.13
LIME1-210ENST00000621325 YTHDC2Q9H6S0 1430 aaKnown RBP28.34■■■□□ 2.13
LIME1-210ENST00000621325 ALKQ9UM73 1620 aa28.34■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 113.2 ms