RNA–Protein interactions for RNA: ENST00000617641.4

PCDHGC3-205, Transcript of protocadherin gamma subfamily C, 3, humanhuman

TSL 1 (best) BASIC

Gene PCDHGC3, Length 2,346 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-205ENST00000617641 CNGB1Q14028 1251 aaPredicted RBP23.85■■□□□ 1.41
PCDHGC3-205ENST00000617641 SYNMO15061 1565 aa23.84■■□□□ 1.41
PCDHGC3-205ENST00000617641 ARHGAP31Q2M1Z3 1444 aa23.83■■□□□ 1.41
PCDHGC3-205ENST00000617641 SCAF11Q99590 1463 aaKnown RBP23.83■■□□□ 1.41
PCDHGC3-205ENST00000617641 CFAP70Q5T0N1 1121 aa23.82■■□□□ 1.4
PCDHGC3-205ENST00000617641 MRS2Q9HD23 443 aa23.82■■□□□ 1.4
PCDHGC3-205ENST00000617641 PIK3C2BO00750 1634 aa23.81■■□□□ 1.4
PCDHGC3-205ENST00000617641 NRXN1Q9ULB1 1477 aa23.81■■□□□ 1.4
PCDHGC3-205ENST00000617641 TMF1P82094 1093 aa23.8■■□□□ 1.4
PCDHGC3-205ENST00000617641 PPLO60437 1756 aa23.79■■□□□ 1.4
PCDHGC3-205ENST00000617641 REREQ9P2R6 1566 aa23.79■■□□□ 1.4
PCDHGC3-205ENST00000617641 AGLP35573 1532 aa23.75■■□□□ 1.39
PCDHGC3-205ENST00000617641 HNRNPUQ00839 825 aaKnown RBP eCLIP23.75■■□□□ 1.39
PCDHGC3-205ENST00000617641 PREX1Q8TCU6 1659 aa23.74■■□□□ 1.39
PCDHGC3-205ENST00000617641 FAM9BQ8IZU0 186 aa23.73■■□□□ 1.39
PCDHGC3-205ENST00000617641 EIF3AQ14152 1382 aaKnown RBP23.73■■□□□ 1.39
PCDHGC3-205ENST00000617641 RPGRIP1LQ68CZ1 1315 aa23.73■■□□□ 1.39
PCDHGC3-205ENST00000617641 PIK3C2GO75747 1445 aa23.72■■□□□ 1.39
PCDHGC3-205ENST00000617641 IDI1Q13907 227 aa23.72■■□□□ 1.39
PCDHGC3-205ENST00000617641 ARHGEF40Q8TER5 1519 aa23.72■■□□□ 1.39
PCDHGC3-205ENST00000617641 PER1O15534 1290 aaPredicted RBP23.68■■□□□ 1.38
PCDHGC3-205ENST00000617641 SLC52A1Q9NWF4 448 aa23.68■■□□□ 1.38
PCDHGC3-205ENST00000617641 NEXMIFQ5QGS0 1516 aa23.68■■□□□ 1.38
PCDHGC3-205ENST00000617641 FBXO31Q5XUX0 539 aaPredicted RBP23.68■■□□□ 1.38
PCDHGC3-205ENST00000617641 SETBP1Q9Y6X0 1596 aa23.67■■□□□ 1.38
PCDHGC3-205ENST00000617641 PANK3Q9H999 370 aa23.67■■□□□ 1.38
PCDHGC3-205ENST00000617641 NUTM2DQ5VT03 806 aaPredicted RBP23.67■■□□□ 1.38
PCDHGC3-205ENST00000617641 CLTCQ00610 1675 aaKnown RBP23.67■■□□□ 1.38
PCDHGC3-205ENST00000617641 C14orf93Q9H972 538 aaKnown RBP23.66■■□□□ 1.38
PCDHGC3-205ENST00000617641 MLECQ14165 292 aa23.65■■□□□ 1.38
PCDHGC3-205ENST00000617641 KTN1Q86UP2 1357 aaKnown RBP23.65■■□□□ 1.38
PCDHGC3-205ENST00000617641 MYO5BQ9ULV0 1848 aa23.65■■□□□ 1.38
PCDHGC3-205ENST00000617641 ERVK-7P63135 1459 aa23.65■■□□□ 1.38
PCDHGC3-205ENST00000617641 RALBP1Q15311 655 aa23.65■■□□□ 1.38
PCDHGC3-205ENST00000617641 PPP6R1Q9UPN7 881 aa23.65■■□□□ 1.38
PCDHGC3-205ENST00000617641 TMEM131LA2VDJ0 1609 aa23.63■■□□□ 1.37
PCDHGC3-205ENST00000617641 CDCA8Q53HL2 280 aa23.63■■□□□ 1.37
PCDHGC3-205ENST00000617641 ADGRB1O14514 1584 aa23.63■■□□□ 1.37
PCDHGC3-205ENST00000617641 MYBBP1AQ9BQG0 1328 aaKnown RBP23.62■■□□□ 1.37
PCDHGC3-205ENST00000617641 VGFO15240 615 aaPredicted RBP23.62■■□□□ 1.37
PCDHGC3-205ENST00000617641 MYO3AQ8NEV4 1616 aa23.61■■□□□ 1.37
PCDHGC3-205ENST00000617641 PARD3Q8TEW0 1356 aa23.61■■□□□ 1.37
PCDHGC3-205ENST00000617641 TMEM132EQ6IEE7 984 aa23.6■■□□□ 1.37
PCDHGC3-205ENST00000617641 TMC1Q8TDI8 760 aa23.6■■□□□ 1.37
PCDHGC3-205ENST00000617641 TRAK1Q9UPV9 953 aa23.59■■□□□ 1.37
PCDHGC3-205ENST00000617641 KDM5AP29375 1690 aaKnown RBP23.59■■□□□ 1.37
PCDHGC3-205ENST00000617641 MYOM1P52179 1685 aa23.58■■□□□ 1.37
PCDHGC3-205ENST00000617641 CC2D1BQ5T0F9 858 aaKnown RBP23.58■■□□□ 1.36
PCDHGC3-205ENST00000617641 BRD4O60885 1362 aaPredicted RBP23.57■■□□□ 1.36
PCDHGC3-205ENST00000617641 CENPJQ9HC77 1338 aaPredicted RBP23.56■■□□□ 1.36
PCDHGC3-205ENST00000617641 ZFYVE9O95405 1425 aa23.56■■□□□ 1.36
PCDHGC3-205ENST00000617641 PNISRQ8TF01 805 aaKnown RBP23.55■■□□□ 1.36
PCDHGC3-205ENST00000617641 SBNO2Q9Y2G9 1366 aa23.54■■□□□ 1.36
PCDHGC3-205ENST00000617641 SLC24A1O60721 1099 aa23.54■■□□□ 1.36
PCDHGC3-205ENST00000617641 SUPT16HQ9Y5B9 1047 aaKnown RBP23.54■■□□□ 1.36
PCDHGC3-205ENST00000617641 SPATA31D1Q6ZQQ2 1576 aa23.54■■□□□ 1.36
PCDHGC3-205ENST00000617641 SENP3Q9H4L4 574 aaPredicted RBP23.54■■□□□ 1.36
PCDHGC3-205ENST00000617641 QRICH2Q9H0J4 1663 aa23.53■■□□□ 1.36
PCDHGC3-205ENST00000617641 NLRP13Q86W25 1043 aa23.52■■□□□ 1.36
PCDHGC3-205ENST00000617641 ZBED9Q6R2W3 1325 aa23.51■■□□□ 1.35
PCDHGC3-205ENST00000617641 STAG3Q9UJ98 1225 aa23.5■■□□□ 1.35
PCDHGC3-205ENST00000617641 KNSTRNQ9Y448 316 aa23.5■■□□□ 1.35
PCDHGC3-205ENST00000617641 ESF1Q9H501 851 aaKnown RBP23.49■■□□□ 1.35
PCDHGC3-205ENST00000617641 ARHGEF28Q8N1W1 1705 aaKnown RBP23.48■■□□□ 1.35
PCDHGC3-205ENST00000617641 ASXL1Q8IXJ9 1541 aa23.47■■□□□ 1.35
PCDHGC3-205ENST00000617641 ZMYM3Q14202 1370 aa23.47■■□□□ 1.35
PCDHGC3-205ENST00000617641 LRPPRCP42704 1394 aaKnown RBP23.46■■□□□ 1.35
PCDHGC3-205ENST00000617641 AMER1Q5JTC6 1135 aaPredicted RBP23.46■■□□□ 1.35
PCDHGC3-205ENST00000617641 A2ML1A8K2U0 1454 aa23.46■■□□□ 1.35
PCDHGC3-205ENST00000617641 FKBP8Q14318 412 aa23.42■■□□□ 1.34
PCDHGC3-205ENST00000617641 STK26Q9P289 416 aa23.41■■□□□ 1.34
PCDHGC3-205ENST00000617641 SENP3-EIF4A1A0A087X0R7 540 aa23.4■■□□□ 1.34
PCDHGC3-205ENST00000617641 ALKQ9UM73 1620 aa23.39■■□□□ 1.34
PCDHGC3-205ENST00000617641 RIMS2Q9UQ26 1411 aa23.39■■□□□ 1.33
PCDHGC3-205ENST00000617641 NEFLP07196 543 aa23.38■■□□□ 1.33
PCDHGC3-205ENST00000617641 TRHP20396 242 aaPredicted RBP23.38■■□□□ 1.33
PCDHGC3-205ENST00000617641 CARD14Q9BXL6 1004 aa23.38■■□□□ 1.33
PCDHGC3-205ENST00000617641 SAFB2Q14151 953 aaKnown RBP eCLIP23.37■■□□□ 1.33
PCDHGC3-205ENST00000617641 NPC1L1Q9UHC9 1359 aa23.37■■□□□ 1.33
PCDHGC3-205ENST00000617641 TULP4Q9NRJ4 1543 aa23.37■■□□□ 1.33
PCDHGC3-205ENST00000617641 YTHDC2Q9H6S0 1430 aaKnown RBP23.36■■□□□ 1.33
PCDHGC3-205ENST00000617641 PPP2R1AP30153 589 aa23.35■■□□□ 1.33
PCDHGC3-205ENST00000617641 PTPRMP28827 1452 aa23.35■■□□□ 1.33
PCDHGC3-205ENST00000617641 TNRQ92752 1358 aa23.35■■□□□ 1.33
PCDHGC3-205ENST00000617641 EVC2Q86UK5 1308 aa23.35■■□□□ 1.33
PCDHGC3-205ENST00000617641 SLC12A5Q9H2X9 1139 aa23.33■■□□□ 1.33
PCDHGC3-205ENST00000617641 BCANQ96GW7 911 aa23.32■■□□□ 1.32
PCDHGC3-205ENST00000617641 PRAM1Q96QH2 718 aa23.3■■□□□ 1.32
PCDHGC3-205ENST00000617641 NSD3Q9BZ95 1437 aa23.29■■□□□ 1.32
PCDHGC3-205ENST00000617641 SETD1AO15047 1707 aaKnown RBP23.29■■□□□ 1.32
PCDHGC3-205ENST00000617641 PUS7Q96PZ0 661 aaKnown RBP23.28■■□□□ 1.32
PCDHGC3-205ENST00000617641 CABP2Q9NPB3 220 aa23.28■■□□□ 1.32
PCDHGC3-205ENST00000617641 POGKQ9P215 609 aa23.28■■□□□ 1.32
PCDHGC3-205ENST00000617641 SMG6Q86US8 1419 aaKnown RBP23.27■■□□□ 1.32
PCDHGC3-205ENST00000617641 MINK1Q8N4C8 1332 aaPredicted RBP23.27■■□□□ 1.32
PCDHGC3-205ENST00000617641 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.26■■□□□ 1.31
PCDHGC3-205ENST00000617641 NRXN3Q9Y4C0 1643 aa23.26■■□□□ 1.31
PCDHGC3-205ENST00000617641 UBR1Q8IWV7 1749 aa23.25■■□□□ 1.31
PCDHGC3-205ENST00000617641 CEBPAP49715 358 aaPredicted RBP23.25■■□□□ 1.31
PCDHGC3-205ENST00000617641 BLMP54132 1417 aaPredicted RBP23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms