RNA–Protein interactions for RNA: ENST00000616352.4

ACACA-238, Transcript of acetyl-CoA carboxylase alpha, human

TSL 1 (best)

Gene ACACA, Length 1,626 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ACACA-238	ENST00000616352	TMEM2	Q9UHN6	1383 aa		33.18	■■■□□ 2.9
ACACA-238	ENST00000616352	THEMIS	Q8N1K5	641 aa	Predicted RBP	33.17	■■■□□ 2.9
ACACA-238	ENST00000616352	MYOM2	P54296	1465 aa		33.17	■■■□□ 2.9
ACACA-238	ENST00000616352	LMTK3	Q96Q04	1460 aa		33.17	■■■□□ 2.9
ACACA-238	ENST00000616352	DCAF11	Q8TEB1	546 aa		33.16	■■■□□ 2.9
ACACA-238	ENST00000616352	RIMS2	Q9UQ26	1411 aa		33.15	■■■□□ 2.9
ACACA-238	ENST00000616352	ZEB1	P37275	1124 aa	Predicted RBP	33.13	■■■□□ 2.89
ACACA-238	ENST00000616352	STAC3	Q96MF2	364 aa		33.11	■■■□□ 2.89
ACACA-238	ENST00000616352	NRXN1	Q9ULB1	1477 aa		33.1	■■■□□ 2.89
ACACA-238	ENST00000616352	POLR1A	O95602	1720 aa	Predicted RBP	33.09	■■■□□ 2.89
ACACA-238	ENST00000616352	PPP1R15A	O75807	674 aa	Predicted RBP	33.09	■■■□□ 2.89
ACACA-238	ENST00000616352	KDM2A	Q9Y2K7	1162 aa		33.08	■■■□□ 2.89
ACACA-238	ENST00000616352	PRAG1	Q86YV5	1406 aa		33.06	■■■□□ 2.88
ACACA-238	ENST00000616352	VGF	O15240	615 aa	Predicted RBP	33.04	■■■□□ 2.88
ACACA-238	ENST00000616352	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	33.04	■■■□□ 2.88
ACACA-238	ENST00000616352	ADGRF5	Q8IZF2	1346 aa		33.04	■■■□□ 2.88
ACACA-238	ENST00000616352	NUTM2D	Q5VT03	806 aa	Predicted RBP	33.03	■■■□□ 2.88
ACACA-238	ENST00000616352	LTK	P29376	864 aa		33.02	■■■□□ 2.88
ACACA-238	ENST00000616352	PIK3C2G	O75747	1445 aa		33.02	■■■□□ 2.88
ACACA-238	ENST00000616352	SCAF11	Q99590	1463 aa	Known RBP	33.02	■■■□□ 2.88
ACACA-238	ENST00000616352	HDGF	P51858	240 aa	Known RBP	33.02	■■■□□ 2.88
ACACA-238	ENST00000616352	KIAA1210	Q9ULL0	1709 aa		33.02	■■■□□ 2.88
ACACA-238	ENST00000616352	TRPM1	Q7Z4N2	1603 aa		33.01	■■■□□ 2.87
ACACA-238	ENST00000616352	NRXN3	Q9Y4C0	1643 aa		33.01	■■■□□ 2.87
ACACA-238	ENST00000616352	NBPF8	Q3BBV2	869 aa		32.99	■■■□□ 2.87
ACACA-238	ENST00000616352	IQGAP1	P46940	1657 aa		32.99	■■■□□ 2.87
ACACA-238	ENST00000616352	TXNDC2	Q86VQ3	553 aa		32.99	■■■□□ 2.87
ACACA-238	ENST00000616352	EID1	Q9Y6B2	187 aa		32.99	■■■□□ 2.87
ACACA-238	ENST00000616352	SETBP1	Q9Y6X0	1596 aa		32.98	■■■□□ 2.87
ACACA-238	ENST00000616352	SETD1A	O15047	1707 aa	Known RBP	32.96	■■■□□ 2.87
ACACA-238	ENST00000616352	LAMC1	P11047	1609 aa		32.96	■■■□□ 2.87
ACACA-238	ENST00000616352	STRC	Q7RTU9	1775 aa		32.95	■■■□□ 2.87
ACACA-238	ENST00000616352	PLEKHG1	Q9ULL1	1385 aa		32.95	■■■□□ 2.87
ACACA-238	ENST00000616352	HSPA2	P54652	639 aa		32.95	■■■□□ 2.86
ACACA-238	ENST00000616352	ANKLE2	Q86XL3	938 aa		32.95	■■■□□ 2.86
ACACA-238	ENST00000616352	MED14	O60244	1454 aa		32.92	■■■□□ 2.86
ACACA-238	ENST00000616352	RALGAPB	Q86X10	1494 aa		32.91	■■■□□ 2.86
ACACA-238	ENST00000616352	ALK	Q9UM73	1620 aa		32.91	■■■□□ 2.86
ACACA-238	ENST00000616352	ADAMTS13	Q76LX8	1427 aa		32.86	■■■□□ 2.85
ACACA-238	ENST00000616352	C14orf93	Q9H972	538 aa	Known RBP	32.86	■■■□□ 2.85
ACACA-238	ENST00000616352	NCKAP5L	Q9HCH0	1330 aa		32.85	■■■□□ 2.85
ACACA-238	ENST00000616352	DIP2A	Q14689	1571 aa		32.84	■■■□□ 2.85
ACACA-238	ENST00000616352	CFAP70	Q5T0N1	1121 aa		32.84	■■■□□ 2.85
ACACA-238	ENST00000616352	NPHP4	O75161	1426 aa	Predicted RBP	32.83	■■■□□ 2.85
ACACA-238	ENST00000616352	ASXL1	Q8IXJ9	1541 aa		32.83	■■■□□ 2.85
ACACA-238	ENST00000616352	SENP3	Q9H4L4	574 aa	Predicted RBP	32.82	■■■□□ 2.84
ACACA-238	ENST00000616352	ADGRB1	O14514	1584 aa		32.82	■■■□□ 2.84
ACACA-238	ENST00000616352	GPRASP1	Q5JY77	1395 aa		32.79	■■■□□ 2.84
ACACA-238	ENST00000616352	NBPF1	Q3BBV0	1214 aa		32.79	■■■□□ 2.84
ACACA-238	ENST00000616352	AEBP2	Q6ZN18	517 aa	Predicted RBP	32.79	■■■□□ 2.84
ACACA-238	ENST00000616352	ROCK2	O75116	1388 aa	Known RBP	32.77	■■■□□ 2.84
ACACA-238	ENST00000616352	BCAN	Q96GW7	911 aa		32.76	■■■□□ 2.83
ACACA-238	ENST00000616352	SLC26A8	Q96RN1	970 aa		32.73	■■■□□ 2.83
ACACA-238	ENST00000616352	TBX22	Q9Y458	520 aa		32.73	■■■□□ 2.83
ACACA-238	ENST00000616352	MET	P08581	1390 aa		32.72	■■■□□ 2.83
ACACA-238	ENST00000616352	CHD2	O14647	1828 aa	Known RBP	32.71	■■■□□ 2.83
ACACA-238	ENST00000616352	TMEM132E	Q6IEE7	984 aa		32.69	■■■□□ 2.82
ACACA-238	ENST00000616352	KNDC1	Q76NI1	1749 aa		32.68	■■■□□ 2.82
ACACA-238	ENST00000616352	CARD11	Q9BXL7	1154 aa		32.66	■■■□□ 2.82
ACACA-238	ENST00000616352	ARHGEF28	Q8N1W1	1705 aa	Known RBP	32.66	■■■□□ 2.82
ACACA-238	ENST00000616352	PIK3R4	Q99570	1358 aa		32.65	■■■□□ 2.82
ACACA-238	ENST00000616352	YTHDC2	Q9H6S0	1430 aa	Known RBP	32.65	■■■□□ 2.82
ACACA-238	ENST00000616352	XRN1	Q8IZH2	1706 aa	Known RBP	32.64	■■■□□ 2.82
ACACA-238	ENST00000616352	PTPRU	Q92729	1446 aa		32.62	■■■□□ 2.81
ACACA-238	ENST00000616352	LRPPRC	P42704	1394 aa	Known RBP	32.61	■■■□□ 2.81
ACACA-238	ENST00000616352	NWD1	Q149M9	1564 aa		32.59	■■■□□ 2.81
ACACA-238	ENST00000616352	TECPR2	O15040	1411 aa		32.59	■■■□□ 2.81
ACACA-238	ENST00000616352	CPS1	P31327	1500 aa		32.58	■■■□□ 2.81
ACACA-238	ENST00000616352	DLC1	Q96QB1	1528 aa		32.58	■■■□□ 2.81
ACACA-238	ENST00000616352	ABCC11	Q96J66	1382 aa		32.57	■■■□□ 2.8
ACACA-238	ENST00000616352	USP47	Q96K76	1375 aa		32.57	■■■□□ 2.8
ACACA-238	ENST00000616352	STRCP1	A6NGW2	1772 aa		32.57	■■■□□ 2.8
ACACA-238	ENST00000616352	DMRT2	Q9Y5R5	561 aa		32.56	■■■□□ 2.8
ACACA-238	ENST00000616352	STK26	Q9P289	416 aa		32.53	■■■□□ 2.8
ACACA-238	ENST00000616352	TRAK1	Q9UPV9	953 aa		32.53	■■■□□ 2.8
ACACA-238	ENST00000616352	AMOTL2	Q9Y2J4	779 aa		32.51	■■■□□ 2.79
ACACA-238	ENST00000616352	EIF4G2	P78344	907 aa	Known RBP eCLIP	32.5	■■■□□ 2.79	1e-9	■□□□□ 9.6
ACACA-238	ENST00000616352	PTCH1	Q13635	1447 aa		32.5	■■■□□ 2.79
ACACA-238	ENST00000616352	QRICH2	Q9H0J4	1663 aa		32.5	■■■□□ 2.79
ACACA-238	ENST00000616352	EIF3A	Q14152	1382 aa	Known RBP	32.49	■■■□□ 2.79
ACACA-238	ENST00000616352	KCNA6	P17658	529 aa		32.47	■■■□□ 2.79
ACACA-238	ENST00000616352	FAM135B	Q49AJ0	1406 aa		32.46	■■■□□ 2.79
ACACA-238	ENST00000616352	HSPA5	P11021	654 aa	Known RBP	32.46	■■■□□ 2.79
ACACA-238	ENST00000616352	ROBO2	Q9HCK4	1378 aa		32.46	■■■□□ 2.79
ACACA-238	ENST00000616352	SIRT1	Q96EB6	747 aa		32.45	■■■□□ 2.79
ACACA-238	ENST00000616352	NKTR	P30414	1462 aa	Known RBP	32.44	■■■□□ 2.78
ACACA-238	ENST00000616352	ST20-MTHFS	A0A0A6YYL1	179 aa		32.43	■■■□□ 2.78
ACACA-238	ENST00000616352	CENPJ	Q9HC77	1338 aa	Predicted RBP	32.4	■■■□□ 2.78
ACACA-238	ENST00000616352	PLEKHH1	Q9ULM0	1364 aa		32.4	■■■□□ 2.78
ACACA-238	ENST00000616352	PRAM1	Q96QH2	718 aa		32.4	■■■□□ 2.78
ACACA-238	ENST00000616352	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	32.38	■■■□□ 2.77
ACACA-238	ENST00000616352	SBNO2	Q9Y2G9	1366 aa		32.38	■■■□□ 2.77
ACACA-238	ENST00000616352	WAPL	Q7Z5K2	1190 aa		32.37	■■■□□ 2.77
ACACA-238	ENST00000616352	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	32.37	■■■□□ 2.77
ACACA-238	ENST00000616352	HIRIP3	Q9BW71	556 aa	Predicted RBP	32.37	■■■□□ 2.77
ACACA-238	ENST00000616352	XIRP1	Q702N8	1843 aa	Known RBP	32.36	■■■□□ 2.77
ACACA-238	ENST00000616352	TESK2	Q96S53	571 aa		32.36	■■■□□ 2.77
ACACA-238	ENST00000616352	POGK	Q9P215	609 aa		32.35	■■■□□ 2.77
ACACA-238	ENST00000616352	NALCN	Q8IZF0	1738 aa		32.33	■■■□□ 2.77
ACACA-238	ENST00000616352	ADGRB2	O60241	1585 aa		32.31	■■■□□ 2.76

Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms