RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 KANK1Q14678 1352 aa15.96■□□□□ 0.15
LIG1-221ENST00000613670 TCP11L2Q8N4U5 519 aa15.96■□□□□ 0.14
LIG1-221ENST00000613670 AFAP1Q8N556 730 aa15.96■□□□□ 0.14
LIG1-221ENST00000613670 STAG3Q9UJ98 1225 aa15.96■□□□□ 0.14
LIG1-221ENST00000613670 SRPK2P78362 688 aaKnown RBP15.95■□□□□ 0.14
LIG1-221ENST00000613670 PDZRN3Q9UPQ7 1066 aa15.95■□□□□ 0.14
LIG1-221ENST00000613670 PLEKHH1Q9ULM0 1364 aa15.94■□□□□ 0.14
LIG1-221ENST00000613670 SPINK5Q9NQ38 1064 aaPredicted RBP15.93■□□□□ 0.14
LIG1-221ENST00000613670 DNMT1P26358 1616 aaKnown RBP15.92■□□□□ 0.14
LIG1-221ENST00000613670 GOLGA6L22H0YM25 854 aa15.92■□□□□ 0.14
LIG1-221ENST00000613670 PDE3AQ14432 1141 aa15.91■□□□□ 0.14
LIG1-221ENST00000613670 ZKSCAN2Q63HK3 967 aa15.91■□□□□ 0.14
LIG1-221ENST00000613670 RSPH6AQ9H0K4 717 aa15.91■□□□□ 0.14
LIG1-221ENST00000613670 MRC2Q9UBG0 1479 aa15.91■□□□□ 0.14
LIG1-221ENST00000613670 MTHFSP49914 203 aa15.91■□□□□ 0.14
LIG1-221ENST00000613670 RUNDC1Q96C34 613 aa15.91■□□□□ 0.14
LIG1-221ENST00000613670 SLC12A5Q9H2X9 1139 aa15.91■□□□□ 0.14
LIG1-221ENST00000613670 MAGI1Q96QZ7 1491 aaPredicted RBP15.91■□□□□ 0.14
LIG1-221ENST00000613670 TMEM132EQ6IEE7 984 aa15.9■□□□□ 0.14
LIG1-221ENST00000613670 APBB1O00213 710 aa15.89■□□□□ 0.14
LIG1-221ENST00000613670 TPRNQ4KMQ1 711 aa15.89■□□□□ 0.14
LIG1-221ENST00000613670 WWC1Q8IX03 1113 aa15.89■□□□□ 0.14
LIG1-221ENST00000613670 PRAG1Q86YV5 1406 aa15.89■□□□□ 0.13
LIG1-221ENST00000613670 SEC24BO95487 1268 aa15.89■□□□□ 0.13
LIG1-221ENST00000613670 DZIP1LQ8IYY4 767 aaKnown RBP15.89■□□□□ 0.13
LIG1-221ENST00000613670 ELL2O00472 640 aaPredicted RBP15.89■□□□□ 0.13
LIG1-221ENST00000613670 AMER1Q5JTC6 1135 aaPredicted RBP15.89■□□□□ 0.13
LIG1-221ENST00000613670 C22orf23Q9BZE7 217 aa15.89■□□□□ 0.13
LIG1-221ENST00000613670 ARHGAP5Q13017 1502 aa15.89■□□□□ 0.13
LIG1-221ENST00000613670 GRIN2AQ12879 1464 aa15.88■□□□□ 0.13
LIG1-221ENST00000613670 IFT140Q96RY7 1462 aa15.88■□□□□ 0.13
LIG1-221ENST00000613670 TSR2Q969E8 191 aaKnown RBP15.88■□□□□ 0.13
LIG1-221ENST00000613670 NPM1P06748 294 aaKnown RBP eCLIP15.88■□□□□ 0.13
LIG1-221ENST00000613670 UHRF1BP1Q6BDS2 1440 aa15.87■□□□□ 0.13
LIG1-221ENST00000613670 LNPKQ9C0E8 428 aa15.87■□□□□ 0.13
LIG1-221ENST00000613670 RAPGEF6Q8TEU7 1601 aa15.87■□□□□ 0.13
LIG1-221ENST00000613670 ABCA5Q8WWZ7 1642 aa15.87■□□□□ 0.13
LIG1-221ENST00000613670 BCORL1Q5H9F3 1711 aa15.86■□□□□ 0.13
LIG1-221ENST00000613670 KDM2BQ8NHM5 1336 aa15.86■□□□□ 0.13
LIG1-221ENST00000613670 SYNJ2O15056 1496 aa15.86■□□□□ 0.13
LIG1-221ENST00000613670 CHMP5Q9NZZ3 219 aa15.85■□□□□ 0.13
LIG1-221ENST00000613670 TNNQ9UQP3 1299 aa15.85■□□□□ 0.13
LIG1-221ENST00000613670 IPO8O15397 1037 aaKnown RBP15.85■□□□□ 0.13
LIG1-221ENST00000613670 CCDC141Q6ZP82 1450 aa15.85■□□□□ 0.13
LIG1-221ENST00000613670 PLEKHH2Q8IVE3 1493 aa15.85■□□□□ 0.13
LIG1-221ENST00000613670 DMRT2Q9Y5R5 561 aa15.85■□□□□ 0.13
LIG1-221ENST00000613670 FAM43AQ8N2R8 423 aa15.84■□□□□ 0.13
LIG1-221ENST00000613670 GBP4Q96PP9 640 aa15.84■□□□□ 0.13
LIG1-221ENST00000613670 DISP1Q96F81 1524 aa15.84■□□□□ 0.13
LIG1-221ENST00000613670 KIF14Q15058 1648 aa15.84■□□□□ 0.13
LIG1-221ENST00000613670 ANKRD45Q5TZF3 282 aa15.83■□□□□ 0.13
LIG1-221ENST00000613670 NGEFQ8N5V2 710 aa15.83■□□□□ 0.13
LIG1-221ENST00000613670 TRAK2O60296 914 aa15.83■□□□□ 0.12
LIG1-221ENST00000613670 NKTRP30414 1462 aaKnown RBP15.83■□□□□ 0.12
LIG1-221ENST00000613670 TBC1D2Q9BYX2 928 aa15.82■□□□□ 0.12
LIG1-221ENST00000613670 KDM5CP41229 1560 aa15.82■□□□□ 0.12
LIG1-221ENST00000613670 RARSP54136 660 aaKnown RBP15.82■□□□□ 0.12
LIG1-221ENST00000613670 EXOSC9Q06265 439 aaKnown RBP15.82■□□□□ 0.12
LIG1-221ENST00000613670 GGNBP2Q9H3C7 697 aa15.81■□□□□ 0.12
LIG1-221ENST00000613670 PCDHB15Q9Y5E8 787 aa15.81■□□□□ 0.12
LIG1-221ENST00000613670 KIAA0556O60303 1618 aa15.8■□□□□ 0.12
LIG1-221ENST00000613670 LRRIQ1Q96JM4 1722 aa15.8■□□□□ 0.12
LIG1-221ENST00000613670 ZBTB7CA1YPR0 619 aa15.8■□□□□ 0.12
LIG1-221ENST00000613670 ATP10BO94823 1461 aa15.8■□□□□ 0.12
LIG1-221ENST00000613670 DDX19BQ9UMR2 479 aa15.79■□□□□ 0.12
LIG1-221ENST00000613670 ARHGEF12Q9NZN5 1544 aa15.79■□□□□ 0.12
LIG1-221ENST00000613670 MCM4P33991 863 aa15.79■□□□□ 0.12
LIG1-221ENST00000613670 CABP2Q9NPB3 220 aa15.79■□□□□ 0.12
LIG1-221ENST00000613670 ADAMTS12P58397 1594 aa15.79■□□□□ 0.12
LIG1-221ENST00000613670 RIPK4P57078 832 aa15.79■□□□□ 0.12
LIG1-221ENST00000613670 DDX11L8A8MPP1 907 aa15.78■□□□□ 0.12
LIG1-221ENST00000613670 FAM135AQ9P2D6 1515 aa15.78■□□□□ 0.12
LIG1-221ENST00000613670 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.78■□□□□ 0.12
LIG1-221ENST00000613670 RLBP1P12271 317 aa15.77■□□□□ 0.12
LIG1-221ENST00000613670 MBD5Q9P267 1494 aa15.77■□□□□ 0.12
LIG1-221ENST00000613670 ARID3AQ99856 593 aa15.77■□□□□ 0.11
LIG1-221ENST00000613670 COL17A1Q9UMD9 1497 aaPredicted RBP15.77■□□□□ 0.11
LIG1-221ENST00000613670 MVPQ14764 893 aaKnown RBP15.76■□□□□ 0.11
LIG1-221ENST00000613670 ADGRL2O95490 1459 aa15.76■□□□□ 0.11
LIG1-221ENST00000613670 ADGRF5Q8IZF2 1346 aa15.76■□□□□ 0.11
LIG1-221ENST00000613670 A2MP01023 1474 aa15.76■□□□□ 0.11
LIG1-221ENST00000613670 SOX12O15370 315 aa15.75■□□□□ 0.11
LIG1-221ENST00000613670 FOXD4L5Q5VV16 416 aaPredicted RBP15.75■□□□□ 0.11
LIG1-221ENST00000613670 FOXD4L4Q8WXT5 416 aaPredicted RBP15.75■□□□□ 0.11
LIG1-221ENST00000613670 HSP90AA2PQ14568 343 aaPredicted RBP15.75■□□□□ 0.11
LIG1-221ENST00000613670 C1orf115Q9H7X2 142 aa15.75■□□□□ 0.11
LIG1-221ENST00000613670 MINK1Q8N4C8 1332 aaPredicted RBP15.75■□□□□ 0.11
LIG1-221ENST00000613670 MSNP26038 577 aaKnown RBP15.75■□□□□ 0.11
LIG1-221ENST00000613670 DDX49Q9Y6V7 483 aaKnown RBP15.75■□□□□ 0.11
LIG1-221ENST00000613670 BLMP54132 1417 aaPredicted RBP15.75■□□□□ 0.11
LIG1-221ENST00000613670 PTMAP06454 111 aaKnown RBP15.75■□□□□ 0.11
LIG1-221ENST00000613670 NOB1Q9ULX3 412 aaKnown RBP15.75■□□□□ 0.11
LIG1-221ENST00000613670 STAC3Q96MF2 364 aa15.74■□□□□ 0.11
LIG1-221ENST00000613670 CARD14Q9BXL6 1004 aa15.74■□□□□ 0.11
LIG1-221ENST00000613670 VSIG10Q8N0Z9 540 aa15.74■□□□□ 0.11
LIG1-221ENST00000613670 ITSN2Q9NZM3 1697 aa15.73■□□□□ 0.11
LIG1-221ENST00000613670 EVC2Q86UK5 1308 aa15.73■□□□□ 0.11
LIG1-221ENST00000613670 PANK2Q9BZ23 570 aa15.73■□□□□ 0.11
LIG1-221ENST00000613670 TBC1D32Q96NH3 1257 aa15.73■□□□□ 0.11
LIG1-221ENST00000613670 NSD3Q9BZ95 1437 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms