RNA–Protein interactions for RNA: ENST00000613459.4

HMGXB3-206, Transcript of HMG-box containing 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene HMGXB3, Length 5,567 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-206ENST00000613459 HOOK1Q9UJC3 728 aaKnown RBP21.28■■□□□ 1
HMGXB3-206ENST00000613459 GTF2E1P29083 439 aaPredicted RBP21.28■■□□□ 1
HMGXB3-206ENST00000613459 CHMP5Q9NZZ3 219 aa21.28■■□□□ 1
HMGXB3-206ENST00000613459 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.28■■□□□ 1
HMGXB3-206ENST00000613459 RNF20Q5VTR2 975 aa21.27■■□□□ 1
HMGXB3-206ENST00000613459 AMOTL1Q8IY63 956 aa21.27■■□□□ 1
HMGXB3-206ENST00000613459 ANKRD20A12PQ8NF67 263 aa21.27■■□□□ 1
HMGXB3-206ENST00000613459 JPH4Q96JJ6 628 aa21.27■■□□□ 1
HMGXB3-206ENST00000613459 ATAD2BQ9ULI0 1458 aa21.27■■□□□ 1
HMGXB3-206ENST00000613459 CRBNQ96SW2 442 aa21.27■■□□□ 1
HMGXB3-206ENST00000613459 TRIM29Q14134 588 aa21.26■□□□□ 0.99
HMGXB3-206ENST00000613459 TEX35Q5T0J7 233 aa21.26■□□□□ 0.99
HMGXB3-206ENST00000613459 TEFQ10587 303 aa21.26■□□□□ 0.99
HMGXB3-206ENST00000613459 HSP90AB4PQ58FF6 505 aa21.26■□□□□ 0.99
HMGXB3-206ENST00000613459 CCDC9Q9Y3X0 531 aaKnown RBP21.25■□□□□ 0.99
HMGXB3-206ENST00000613459 EXOC6Q8TAG9 804 aa21.25■□□□□ 0.99
HMGXB3-206ENST00000613459 DDX58O95786 925 aaKnown RBP21.24■□□□□ 0.99
HMGXB3-206ENST00000613459 NUCB2P80303 420 aa21.24■□□□□ 0.99
HMGXB3-206ENST00000613459 RRP7AQ9Y3A4 280 aaKnown RBP21.24■□□□□ 0.99
HMGXB3-206ENST00000613459 DZIP1LQ8IYY4 767 aaKnown RBP21.24■□□□□ 0.99
HMGXB3-206ENST00000613459 PKNOX2Q96KN3 472 aa21.24■□□□□ 0.99
HMGXB3-206ENST00000613459 CUX1P39880 1505 aa21.24■□□□□ 0.99
HMGXB3-206ENST00000613459 DIAPH1O60610 1272 aaKnown RBP21.24■□□□□ 0.99
HMGXB3-206ENST00000613459 IPO7O95373 1038 aaKnown RBP21.23■□□□□ 0.99
HMGXB3-206ENST00000613459 MYOM3Q5VTT5 1437 aa21.23■□□□□ 0.99
HMGXB3-206ENST00000613459 RUSC2Q8N2Y8 1516 aa21.23■□□□□ 0.99
HMGXB3-206ENST00000613459 MIA2Q96PC5 1412 aa21.22■□□□□ 0.99
HMGXB3-206ENST00000613459 LTV1Q96GA3 475 aaPredicted RBP21.22■□□□□ 0.99
HMGXB3-206ENST00000613459 NOL10Q9BSC4 688 aaKnown RBP21.22■□□□□ 0.99
HMGXB3-206ENST00000613459 CCAR2Q8N163 923 aaKnown RBP21.21■□□□□ 0.99
HMGXB3-206ENST00000613459 IL27Q8NEV9 243 aa21.21■□□□□ 0.99
HMGXB3-206ENST00000613459 SLC4A3P48751 1232 aa21.21■□□□□ 0.99
HMGXB3-206ENST00000613459 TTC5Q8N0Z6 440 aa21.21■□□□□ 0.99
HMGXB3-206ENST00000613459 SMARCA4P51532 1647 aa21.21■□□□□ 0.99
HMGXB3-206ENST00000613459 INTS3Q68E01 1043 aaKnown RBP21.21■□□□□ 0.99
HMGXB3-206ENST00000613459 RUNDC1Q96C34 613 aa21.2■□□□□ 0.98
HMGXB3-206ENST00000613459 COG6Q9Y2V7 657 aa21.2■□□□□ 0.98
HMGXB3-206ENST00000613459 PES1O00541 588 aaKnown RBP21.2■□□□□ 0.98
HMGXB3-206ENST00000613459 IFIT2P09913 472 aaKnown RBP21.2■□□□□ 0.98
HMGXB3-206ENST00000613459 C9orf78Q9NZ63 289 aaPredicted RBP21.19■□□□□ 0.98
HMGXB3-206ENST00000613459 WWC1Q8IX03 1113 aa21.19■□□□□ 0.98
HMGXB3-206ENST00000613459 GNAI1P63096 354 aa21.18■□□□□ 0.98
HMGXB3-206ENST00000613459 VPS53Q5VIR6 699 aa21.18■□□□□ 0.98
HMGXB3-206ENST00000613459 PTPRGP23470 1445 aa21.18■□□□□ 0.98
HMGXB3-206ENST00000613459 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.18■□□□□ 0.98
HMGXB3-206ENST00000613459 APAF1O14727 1248 aa21.17■□□□□ 0.98
HMGXB3-206ENST00000613459 ZNF592Q92610 1267 aa21.17■□□□□ 0.98
HMGXB3-206ENST00000613459 CPLX1O14810 134 aa21.16■□□□□ 0.98
HMGXB3-206ENST00000613459 ERC2O15083 957 aa21.16■□□□□ 0.98
HMGXB3-206ENST00000613459 ANO2Q9NQ90 1003 aa21.16■□□□□ 0.98
HMGXB3-206ENST00000613459 PDE4CQ08493 712 aa21.16■□□□□ 0.98
HMGXB3-206ENST00000613459 TRDNQ13061 729 aa21.16■□□□□ 0.98
HMGXB3-206ENST00000613459 MCTP1Q6DN14 999 aa21.16■□□□□ 0.98
HMGXB3-206ENST00000613459 NUTM2DQ5VT03 806 aaPredicted RBP21.15■□□□□ 0.98
HMGXB3-206ENST00000613459 FAM43AQ8N2R8 423 aa21.14■□□□□ 0.98
HMGXB3-206ENST00000613459 BCL2L13Q9BXK5 485 aa21.14■□□□□ 0.97
HMGXB3-206ENST00000613459 G3BP1Q13283 466 aaKnown RBP eCLIP21.14■□□□□ 0.97
HMGXB3-206ENST00000613459 PRM3Q9NNZ6 103 aa21.14■□□□□ 0.97
HMGXB3-206ENST00000613459 PLIN1O60240 522 aa21.13■□□□□ 0.97
HMGXB3-206ENST00000613459 RIPK4P57078 832 aa21.13■□□□□ 0.97
HMGXB3-206ENST00000613459 ELL2O00472 640 aaPredicted RBP21.12■□□□□ 0.97
HMGXB3-206ENST00000613459 ARGLU1Q9NWB6 273 aaPredicted RBP21.12■□□□□ 0.97
HMGXB3-206ENST00000613459 MTERF4Q7Z6M4 381 aaKnown RBP21.12■□□□□ 0.97
HMGXB3-206ENST00000613459 FAM13BQ9NYF5 915 aa21.12■□□□□ 0.97
HMGXB3-206ENST00000613459 CNTLNQ9NXG0 1405 aa21.12■□□□□ 0.97
HMGXB3-206ENST00000613459 NOM1Q5C9Z4 860 aaKnown RBP21.11■□□□□ 0.97
HMGXB3-206ENST00000613459 SMC3Q9UQE7 1217 aa21.11■□□□□ 0.97
HMGXB3-206ENST00000613459 CCDC7Q96M83 1385 aa21.11■□□□□ 0.97
HMGXB3-206ENST00000613459 BICD2Q8TD16 824 aa21.11■□□□□ 0.97
HMGXB3-206ENST00000613459 ACBD3Q9H3P7 528 aa21.11■□□□□ 0.97
HMGXB3-206ENST00000613459 FANCD2Q9BXW9 1451 aa21.11■□□□□ 0.97
HMGXB3-206ENST00000613459 BRD4O60885 1362 aaPredicted RBP21.1■□□□□ 0.97
HMGXB3-206ENST00000613459 CDR1P51861 262 aa21.1■□□□□ 0.97
HMGXB3-206ENST00000613459 SASS6Q6UVJ0 657 aa21.1■□□□□ 0.97
HMGXB3-206ENST00000613459 ERICH2A1L162 156 aa21.09■□□□□ 0.97
HMGXB3-206ENST00000613459 HOMER1Q86YM7 354 aa21.09■□□□□ 0.97
HMGXB3-206ENST00000613459 MAP7D2Q96T17 732 aa21.09■□□□□ 0.97
HMGXB3-206ENST00000613459 CCDC73Q6ZRK6 1079 aa21.08■□□□□ 0.97
HMGXB3-206ENST00000613459 TRIM34Q9BYJ4 488 aa21.08■□□□□ 0.97
HMGXB3-206ENST00000613459 CCDC39Q9UFE4 941 aa21.08■□□□□ 0.97
HMGXB3-206ENST00000613459 SAFBQ15424 915 aaKnown RBP eCLIP21.08■□□□□ 0.97
HMGXB3-206ENST00000613459 NINLQ9Y2I6 1382 aa21.08■□□□□ 0.96
HMGXB3-206ENST00000613459 TCEAL9Q9UHQ7 104 aa21.08■□□□□ 0.96
HMGXB3-206ENST00000613459 CDC45O75419 566 aa21.07■□□□□ 0.96
HMGXB3-206ENST00000613459 MINK1Q8N4C8 1332 aaPredicted RBP21.07■□□□□ 0.96
HMGXB3-206ENST00000613459 EVA1CP58658 441 aa21.07■□□□□ 0.96
HMGXB3-206ENST00000613459 AK7Q96M32 723 aa21.07■□□□□ 0.96
HMGXB3-206ENST00000613459 BRPF3Q9ULD4 1205 aa21.07■□□□□ 0.96
HMGXB3-206ENST00000613459 LETM1O95202 739 aaPredicted RBP21.07■□□□□ 0.96
HMGXB3-206ENST00000613459 FOXD4L6Q3SYB3 417 aaPredicted RBP21.07■□□□□ 0.96
HMGXB3-206ENST00000613459 FOXD4L3Q6VB84 417 aaPredicted RBP21.07■□□□□ 0.96
HMGXB3-206ENST00000613459 PCMTD1Q96MG8 357 aaPredicted RBP21.07■□□□□ 0.96
HMGXB3-206ENST00000613459 FGD6Q6ZV73 1430 aa21.06■□□□□ 0.96
HMGXB3-206ENST00000613459 MRE11P49959 708 aa21.06■□□□□ 0.96
HMGXB3-206ENST00000613459 FKBP5Q13451 457 aaPredicted RBP21.05■□□□□ 0.96
HMGXB3-206ENST00000613459 NAT10Q9H0A0 1025 aaKnown RBP21.05■□□□□ 0.96
HMGXB3-206ENST00000613459 C22orf23Q9BZE7 217 aa21.05■□□□□ 0.96
HMGXB3-206ENST00000613459 PSMA5P28066 241 aa21.04■□□□□ 0.96
HMGXB3-206ENST00000613459 EIF2S2P20042 333 aaKnown RBP21.04■□□□□ 0.96
HMGXB3-206ENST00000613459 SCAPERQ9BY12 1400 aa21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms