RNA–Protein interactions for RNA: ENST00000611712.4

LIG4-204, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 4 BASIC

Gene LIG4, Length 4,180 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-204ENST00000611712 ADGRL2O95490 1459 aa11.07□□□□□ -0.64
LIG4-204ENST00000611712 SPRYD3Q8NCJ5 442 aa11.07□□□□□ -0.64
LIG4-204ENST00000611712 PRAG1Q86YV5 1406 aa11.07□□□□□ -0.64
LIG4-204ENST00000611712 SKAP1Q86WV1 359 aa11.07□□□□□ -0.64
LIG4-204ENST00000611712 SLC12A5Q9H2X9 1139 aa11.07□□□□□ -0.64
LIG4-204ENST00000611712 USP35Q9P2H5 1018 aa11.07□□□□□ -0.64
LIG4-204ENST00000611712 RUNDC1Q96C34 613 aa11.06□□□□□ -0.64
LIG4-204ENST00000611712 BCAR3O75815 825 aa11.06□□□□□ -0.64
LIG4-204ENST00000611712 C20orf194Q5TEA3 1177 aa11.06□□□□□ -0.64
LIG4-204ENST00000611712 PANK1Q8TE04 598 aa11.06□□□□□ -0.64
LIG4-204ENST00000611712 IPO8O15397 1037 aaKnown RBP11.06□□□□□ -0.64
LIG4-204ENST00000611712 MTHFSP49914 203 aa11.06□□□□□ -0.64
LIG4-204ENST00000611712 TESK2Q96S53 571 aa11.06□□□□□ -0.64
LIG4-204ENST00000611712 FAM135AQ9P2D6 1515 aa11.05□□□□□ -0.64
LIG4-204ENST00000611712 UHRF1BP1Q6BDS2 1440 aa11.05□□□□□ -0.64
LIG4-204ENST00000611712 SHANK2Q9UPX8 1470 aa11.05□□□□□ -0.64
LIG4-204ENST00000611712 NUP160Q12769 1436 aa11.05□□□□□ -0.64
LIG4-204ENST00000611712 TCP11L2Q8N4U5 519 aa11.05□□□□□ -0.64
LIG4-204ENST00000611712 PARD3Q8TEW0 1356 aa11.04□□□□□ -0.64
LIG4-204ENST00000611712 MINK1Q8N4C8 1332 aaPredicted RBP11.04□□□□□ -0.64
LIG4-204ENST00000611712 DENND4BO75064 1496 aaPredicted RBP11.04□□□□□ -0.64
LIG4-204ENST00000611712 ARHGEF12Q9NZN5 1544 aa11.04□□□□□ -0.64
LIG4-204ENST00000611712 PER1O15534 1290 aaPredicted RBP11.04□□□□□ -0.64
LIG4-204ENST00000611712 SYCP2Q9BX26 1530 aa11.04□□□□□ -0.64
LIG4-204ENST00000611712 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.03□□□□□ -0.64
LIG4-204ENST00000611712 SLFN5Q08AF3 891 aa11.03□□□□□ -0.64
LIG4-204ENST00000611712 CHMP4BQ9H444 224 aaKnown RBP11.03□□□□□ -0.64
LIG4-204ENST00000611712 CABP2Q9NPB3 220 aa11.03□□□□□ -0.64
LIG4-204ENST00000611712 ZKSCAN2Q63HK3 967 aa11.02□□□□□ -0.64
LIG4-204ENST00000611712 MFAP1P55081 439 aaKnown RBP11.02□□□□□ -0.65
LIG4-204ENST00000611712 SOX12O15370 315 aa11.01□□□□□ -0.65
LIG4-204ENST00000611712 GGNBP2Q9H3C7 697 aa11.01□□□□□ -0.65
LIG4-204ENST00000611712 ADGRF5Q8IZF2 1346 aa11.01□□□□□ -0.65
LIG4-204ENST00000611712 DUSP27Q5VZP5 1158 aa11.01□□□□□ -0.65
LIG4-204ENST00000611712 ANP32BQ92688 251 aaKnown RBP11.01□□□□□ -0.65
LIG4-204ENST00000611712 LRPPRCP42704 1394 aaKnown RBP11.01□□□□□ -0.65
LIG4-204ENST00000611712 HSCBQ8IWL3 235 aa11.01□□□□□ -0.65
LIG4-204ENST00000611712 OSCARQ8IYS5 282 aa11.01□□□□□ -0.65
LIG4-204ENST00000611712 CEP170Q5SW79 1584 aa11□□□□□ -0.65
LIG4-204ENST00000611712 AMER1Q5JTC6 1135 aaPredicted RBP11□□□□□ -0.65
LIG4-204ENST00000611712 KDM5BQ9UGL1 1544 aa10.99□□□□□ -0.65
LIG4-204ENST00000611712 PDE3AQ14432 1141 aa10.99□□□□□ -0.65
LIG4-204ENST00000611712 HSP90AB1P08238 724 aaKnown RBP10.99□□□□□ -0.65
LIG4-204ENST00000611712 DZIP1LQ8IYY4 767 aaKnown RBP10.99□□□□□ -0.65
LIG4-204ENST00000611712 RNF123Q5XPI4 1314 aa10.99□□□□□ -0.65
LIG4-204ENST00000611712 PLCH2O75038 1416 aa10.98□□□□□ -0.65
LIG4-204ENST00000611712 SCAF11Q99590 1463 aaKnown RBP10.98□□□□□ -0.65
LIG4-204ENST00000611712 CALD1Q05682 793 aaKnown RBP10.98□□□□□ -0.65
LIG4-204ENST00000611712 C14orf37Q86TY3 774 aa10.98□□□□□ -0.65
LIG4-204ENST00000611712 ELL2O00472 640 aaPredicted RBP10.98□□□□□ -0.65
LIG4-204ENST00000611712 RIPK4P57078 832 aa10.98□□□□□ -0.65
LIG4-204ENST00000611712 GSE1Q14687 1217 aa10.98□□□□□ -0.65
LIG4-204ENST00000611712 NFKBIBQ15653 356 aa10.98□□□□□ -0.65
LIG4-204ENST00000611712 WWC1Q8IX03 1113 aa10.98□□□□□ -0.65
LIG4-204ENST00000611712 DIAPH1O60610 1272 aaKnown RBP10.97□□□□□ -0.65
LIG4-204ENST00000611712 A2MP01023 1474 aa10.97□□□□□ -0.65
LIG4-204ENST00000611712 TRAPPC8Q9Y2L5 1435 aa10.97□□□□□ -0.65
LIG4-204ENST00000611712 HDGFP51858 240 aaKnown RBP10.97□□□□□ -0.65
LIG4-204ENST00000611712 DUOX2Q9NRD8 1548 aa10.97□□□□□ -0.65
LIG4-204ENST00000611712 ABCC10Q5T3U5 1492 aa10.96□□□□□ -0.65
LIG4-204ENST00000611712 GOLGA6L22H0YM25 854 aa10.96□□□□□ -0.65
LIG4-204ENST00000611712 PLEKHG5O94827 1062 aa10.96□□□□□ -0.65
LIG4-204ENST00000611712 LRRIQ1Q96JM4 1722 aa10.96□□□□□ -0.66
LIG4-204ENST00000611712 RAPGEF3O95398 923 aa10.95□□□□□ -0.66
LIG4-204ENST00000611712 NSD3Q9BZ95 1437 aa10.95□□□□□ -0.66
LIG4-204ENST00000611712 MBD5Q9P267 1494 aa10.95□□□□□ -0.66
LIG4-204ENST00000611712 ZBTB7CA1YPR0 619 aa10.95□□□□□ -0.66
LIG4-204ENST00000611712 APBB1O00213 710 aa10.95□□□□□ -0.66
LIG4-204ENST00000611712 GZF1Q9H116 711 aaPredicted RBP10.95□□□□□ -0.66
LIG4-204ENST00000611712 DDX19BQ9UMR2 479 aa10.95□□□□□ -0.66
LIG4-204ENST00000611712 ADGBQ8N7X0 1667 aa10.95□□□□□ -0.66
LIG4-204ENST00000611712 COL17A1Q9UMD9 1497 aaPredicted RBP10.94□□□□□ -0.66
LIG4-204ENST00000611712 CASC1Q6TDU7 716 aa10.94□□□□□ -0.66
LIG4-204ENST00000611712 TSR2Q969E8 191 aaKnown RBP10.94□□□□□ -0.66
LIG4-204ENST00000611712 ADGRL1O94910 1474 aa10.94□□□□□ -0.66
LIG4-204ENST00000611712 CYB5RLQ6IPT4 315 aa10.94□□□□□ -0.66
LIG4-204ENST00000611712 EXOSC9Q06265 439 aaKnown RBP10.93□□□□□ -0.66
LIG4-204ENST00000611712 AAMPQ13685 434 aa10.93□□□□□ -0.66
LIG4-204ENST00000611712 WDR63Q8IWG1 891 aa10.93□□□□□ -0.66
LIG4-204ENST00000611712 NCLP19338 710 aaKnown RBP10.93□□□□□ -0.66
LIG4-204ENST00000611712 NUTM2FA1L443 756 aa10.93□□□□□ -0.66
LIG4-204ENST00000611712 PRAM1Q96QH2 718 aa10.93□□□□□ -0.66
LIG4-204ENST00000611712 PDZRN3Q9UPQ7 1066 aa10.93□□□□□ -0.66
LIG4-204ENST00000611712 FANCAO15360 1455 aa10.93□□□□□ -0.66
LIG4-204ENST00000611712 GPRASP1Q5JY77 1395 aa10.93□□□□□ -0.66
LIG4-204ENST00000611712 PLEKHH1Q9ULM0 1364 aa10.93□□□□□ -0.66
LIG4-204ENST00000611712 KDM5CP41229 1560 aa10.92□□□□□ -0.66
LIG4-204ENST00000611712 HAP1P54257 671 aaPredicted RBP10.92□□□□□ -0.66
LIG4-204ENST00000611712 NKTRP30414 1462 aaKnown RBP10.92□□□□□ -0.66
LIG4-204ENST00000611712 L1TD1Q5T7N2 865 aaKnown RBP10.92□□□□□ -0.66
LIG4-204ENST00000611712 TRIM44Q96DX7 344 aaPredicted RBP10.92□□□□□ -0.66
LIG4-204ENST00000611712 RPGRIP1LQ68CZ1 1315 aa10.92□□□□□ -0.66
LIG4-204ENST00000611712 HMOX1P09601 288 aa10.91□□□□□ -0.66
LIG4-204ENST00000611712 ANKRD45Q5TZF3 282 aa10.91□□□□□ -0.66
LIG4-204ENST00000611712 ABCA8O94911 1581 aa10.91□□□□□ -0.66
LIG4-204ENST00000611712 LMOD3Q0VAK6 560 aa10.91□□□□□ -0.66
LIG4-204ENST00000611712 NOS1P29475 1434 aa10.91□□□□□ -0.66
LIG4-204ENST00000611712 RTF1Q92541 710 aaKnown RBP10.9□□□□□ -0.66
LIG4-204ENST00000611712 FRAT2O75474 233 aaPredicted RBP10.9□□□□□ -0.66
LIG4-204ENST00000611712 RARSP54136 660 aaKnown RBP10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms