RNA–Protein interactions for RNA: ENST00000606715.3

SHANK2-219, Transcript of SH3 and multiple ankyrin repeat domains 2, human

Gene SHANK2, Length 5,738 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHANK2-219	ENST00000606715	AMOTL1	Q8IY63	956 aa		13.77	□□□□□ -0.2
SHANK2-219	ENST00000606715	HFM1	A2PYH4	1435 aa		13.77	□□□□□ -0.2
SHANK2-219	ENST00000606715	RWDD1	Q9H446	243 aa	Predicted RBP	13.77	□□□□□ -0.21
SHANK2-219	ENST00000606715	CENPJ	Q9HC77	1338 aa	Predicted RBP	13.77	□□□□□ -0.21
SHANK2-219	ENST00000606715	AFAP1	Q8N556	730 aa		13.76	□□□□□ -0.21
SHANK2-219	ENST00000606715	TRIM6-TRIM34	B2RNG4	842 aa		13.76	□□□□□ -0.21
SHANK2-219	ENST00000606715	PANK3	Q9H999	370 aa		13.76	□□□□□ -0.21
SHANK2-219	ENST00000606715	RCAN3	Q9UKA8	241 aa		13.76	□□□□□ -0.21
SHANK2-219	ENST00000606715	PSME1	Q06323	249 aa		13.76	□□□□□ -0.21
SHANK2-219	ENST00000606715	CEP89	Q96ST8	783 aa		13.75	□□□□□ -0.21
SHANK2-219	ENST00000606715	MINK1	Q8N4C8	1332 aa	Predicted RBP	13.75	□□□□□ -0.21
SHANK2-219	ENST00000606715	SLC52A1	Q9NWF4	448 aa		13.74	□□□□□ -0.21
SHANK2-219	ENST00000606715	URB2	Q14146	1524 aa	Known RBP	13.74	□□□□□ -0.21
SHANK2-219	ENST00000606715	ARAP1	Q96P48	1450 aa		13.74	□□□□□ -0.21
SHANK2-219	ENST00000606715	B4GALNT3	Q6L9W6	998 aa		13.73	□□□□□ -0.21
SHANK2-219	ENST00000606715	SCAPER	Q9BY12	1400 aa		13.73	□□□□□ -0.21
SHANK2-219	ENST00000606715	CD109	Q6YHK3	1445 aa		13.73	□□□□□ -0.21
SHANK2-219	ENST00000606715	TEF	Q10587	303 aa		13.73	□□□□□ -0.21
SHANK2-219	ENST00000606715	PMFBP1	Q8TBY8	1022 aa		13.73	□□□□□ -0.21
SHANK2-219	ENST00000606715	SMC4	Q9NTJ3	1288 aa		13.72	□□□□□ -0.21
SHANK2-219	ENST00000606715	C9orf84	Q5VXU9	1444 aa		13.72	□□□□□ -0.21
SHANK2-219	ENST00000606715	VPS37D	Q86XT2	251 aa		13.71	□□□□□ -0.21
SHANK2-219	ENST00000606715	TPM4	P67936	248 aa		13.71	□□□□□ -0.21
SHANK2-219	ENST00000606715	SPRYD3	Q8NCJ5	442 aa		13.71	□□□□□ -0.21
SHANK2-219	ENST00000606715	TXNDC2	Q86VQ3	553 aa		13.71	□□□□□ -0.21
SHANK2-219	ENST00000606715	CREBRF	Q8IUR6	639 aa		13.71	□□□□□ -0.22
SHANK2-219	ENST00000606715	ANKLE2	Q86XL3	938 aa		13.7	□□□□□ -0.22
SHANK2-219	ENST00000606715	PPP1R1B	Q9UD71	204 aa	Predicted RBP	13.7	□□□□□ -0.22
SHANK2-219	ENST00000606715	RBM33	Q96EV2	1170 aa	Known RBP	13.69	□□□□□ -0.22
SHANK2-219	ENST00000606715	PLB1	Q6P1J6	1458 aa		13.68	□□□□□ -0.22
SHANK2-219	ENST00000606715	NEXN	Q0ZGT2	675 aa		13.68	□□□□□ -0.22
SHANK2-219	ENST00000606715	WASHC2A	Q641Q2	1341 aa		13.68	□□□□□ -0.22
SHANK2-219	ENST00000606715	AKAP17A	Q02040	695 aa	Known RBP	13.68	□□□□□ -0.22
SHANK2-219	ENST00000606715	PROSER2	Q86WR7	435 aa	Predicted RBP	13.68	□□□□□ -0.22
SHANK2-219	ENST00000606715	GPRASP1	Q5JY77	1395 aa		13.68	□□□□□ -0.22
SHANK2-219	ENST00000606715	WWC1	Q8IX03	1113 aa		13.68	□□□□□ -0.22
SHANK2-219	ENST00000606715	RPGRIP1L	Q68CZ1	1315 aa		13.68	□□□□□ -0.22
SHANK2-219	ENST00000606715	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	13.67	□□□□□ -0.22
SHANK2-219	ENST00000606715	DIAPH1	O60610	1272 aa	Known RBP	13.67	□□□□□ -0.22
SHANK2-219	ENST00000606715	ANO8	Q9HCE9	1232 aa	Predicted RBP	13.67	□□□□□ -0.22
SHANK2-219	ENST00000606715	DHX16	O60231	1041 aa	Known RBP	13.66	□□□□□ -0.22
SHANK2-219	ENST00000606715	TEX14	Q8IWB6	1497 aa		13.65	□□□□□ -0.22
SHANK2-219	ENST00000606715	SUPT6H	Q7KZ85	1726 aa	Known RBP	13.65	□□□□□ -0.22
SHANK2-219	ENST00000606715	KIF14	Q15058	1648 aa		13.65	□□□□□ -0.22
SHANK2-219	ENST00000606715		E9PSI1	815 aa		13.65	□□□□□ -0.22
SHANK2-219	ENST00000606715		A0A0U1RQG5	324 aa	Predicted RBP	13.65	□□□□□ -0.23
SHANK2-219	ENST00000606715	SAMD1	Q6SPF0	538 aa	Predicted RBP	13.65	□□□□□ -0.23
SHANK2-219	ENST00000606715	AKNA	Q7Z591	1439 aa		13.64	□□□□□ -0.23
SHANK2-219	ENST00000606715	SYNE3	Q6ZMZ3	975 aa		13.64	□□□□□ -0.23
SHANK2-219	ENST00000606715	PPP6R1	Q9UPN7	881 aa		13.64	□□□□□ -0.23
SHANK2-219	ENST00000606715	KIF3A	Q9Y496	699 aa		13.64	□□□□□ -0.23
SHANK2-219	ENST00000606715	EPRS	P07814	1512 aa	Known RBP	13.64	□□□□□ -0.23
SHANK2-219	ENST00000606715	LRRFIP1	Q32MZ4	808 aa	Known RBP	13.64	□□□□□ -0.23
SHANK2-219	ENST00000606715	RAPGEF3	O95398	923 aa		13.63	□□□□□ -0.23
SHANK2-219	ENST00000606715	PRKRIP1	Q9H875	184 aa	Predicted RBP	13.63	□□□□□ -0.23
SHANK2-219	ENST00000606715	CCDC146	Q8IYE0	955 aa		13.63	□□□□□ -0.23
SHANK2-219	ENST00000606715	TIAM1	Q13009	1591 aa		13.62	□□□□□ -0.23
SHANK2-219	ENST00000606715	KIAA1107	Q9UPP5	1409 aa		13.62	□□□□□ -0.23
SHANK2-219	ENST00000606715	EIF2S2	P20042	333 aa	Known RBP	13.62	□□□□□ -0.23
SHANK2-219	ENST00000606715	DMRT2	Q9Y5R5	561 aa		13.62	□□□□□ -0.23
SHANK2-219	ENST00000606715	RAPGEF4	Q8WZA2	1011 aa		13.62	□□□□□ -0.23
SHANK2-219	ENST00000606715	ADGRL1	O94910	1474 aa		13.62	□□□□□ -0.23
SHANK2-219	ENST00000606715	CCAR1	Q8IX12	1150 aa	Known RBP	13.61	□□□□□ -0.23
SHANK2-219	ENST00000606715	SF3A1	Q15459	793 aa	Known RBP	13.61	□□□□□ -0.23
SHANK2-219	ENST00000606715	ZNF608	Q9ULD9	1512 aa	Predicted RBP	13.61	□□□□□ -0.23
SHANK2-219	ENST00000606715	ANKRD30B	Q9BXX2	1392 aa		13.61	□□□□□ -0.23
SHANK2-219	ENST00000606715	CCDC43	Q96MW1	224 aa	Known RBP	13.61	□□□□□ -0.23
SHANK2-219	ENST00000606715	CCDC141	Q6ZP82	1450 aa		13.61	□□□□□ -0.23
SHANK2-219	ENST00000606715	ROCK1	Q13464	1354 aa		13.6	□□□□□ -0.23
SHANK2-219	ENST00000606715	BIVM-ERCC5	R4GMW8	1640 aa		13.6	□□□□□ -0.23
SHANK2-219	ENST00000606715	DENND4B	O75064	1496 aa	Predicted RBP	13.6	□□□□□ -0.23
SHANK2-219	ENST00000606715	C9orf78	Q9NZ63	289 aa	Predicted RBP	13.6	□□□□□ -0.23
SHANK2-219	ENST00000606715	PES1	O00541	588 aa	Known RBP	13.6	□□□□□ -0.23
SHANK2-219	ENST00000606715	NOL8	Q76FK4	1167 aa	Known RBP	13.6	□□□□□ -0.23
SHANK2-219	ENST00000606715	TCERG1	O14776	1098 aa	Known RBP	13.59	□□□□□ -0.23
SHANK2-219	ENST00000606715	MSN	P26038	577 aa	Known RBP	13.59	□□□□□ -0.23
SHANK2-219	ENST00000606715	DAPK1	P53355	1430 aa		13.59	□□□□□ -0.23
SHANK2-219	ENST00000606715	HMGB2	P26583	209 aa	Known RBP	13.59	□□□□□ -0.23
SHANK2-219	ENST00000606715	KIF16B	Q96L93	1317 aa		13.59	□□□□□ -0.23
SHANK2-219	ENST00000606715	CSPP1	Q1MSJ5	1256 aa		13.59	□□□□□ -0.23
SHANK2-219	ENST00000606715	SYAP1	Q96A49	352 aa	Predicted RBP	13.59	□□□□□ -0.23
SHANK2-219	ENST00000606715	NLRP2	Q9NX02	1062 aa		13.59	□□□□□ -0.23
SHANK2-219	ENST00000606715	DDX58	O95786	925 aa	Known RBP	13.59	□□□□□ -0.23
SHANK2-219	ENST00000606715	APP	P05067	770 aa		13.58	□□□□□ -0.24
SHANK2-219	ENST00000606715	ZNF692	Q9BU19	519 aa	Predicted RBP	13.58	□□□□□ -0.24
SHANK2-219	ENST00000606715	GBP4	Q96PP9	640 aa		13.58	□□□□□ -0.24
SHANK2-219	ENST00000606715	CLUAP1	Q96AJ1	413 aa		13.58	□□□□□ -0.24
SHANK2-219	ENST00000606715	CHMP4C	Q96CF2	233 aa		13.58	□□□□□ -0.24
SHANK2-219	ENST00000606715	NUTM2B	A6NNL0	878 aa	Predicted RBP	13.58	□□□□□ -0.24
SHANK2-219	ENST00000606715	NUTM2E	B1AL46	878 aa	Predicted RBP	13.58	□□□□□ -0.24
SHANK2-219	ENST00000606715	TPD52L1	Q16890	204 aa	Predicted RBP	13.58	□□□□□ -0.24
SHANK2-219	ENST00000606715	NUTM2A	Q8IVF1	878 aa	Predicted RBP	13.58	□□□□□ -0.24
SHANK2-219	ENST00000606715	NOP58	Q9Y2X3	529 aa	Known RBP	13.57	□□□□□ -0.24
SHANK2-219	ENST00000606715	ELL2	O00472	640 aa	Predicted RBP	13.57	□□□□□ -0.24
SHANK2-219	ENST00000606715	ZKSCAN2	Q63HK3	967 aa		13.57	□□□□□ -0.24
SHANK2-219	ENST00000606715	RUNDC1	Q96C34	613 aa		13.57	□□□□□ -0.24
SHANK2-219	ENST00000606715	USP35	Q9P2H5	1018 aa		13.56	□□□□□ -0.24
SHANK2-219	ENST00000606715	CCDC7	Q96M83	1385 aa		13.56	□□□□□ -0.24
SHANK2-219	ENST00000606715	PTMS	P20962	102 aa		13.56	□□□□□ -0.24
SHANK2-219	ENST00000606715	TPM3	P06753	285 aa		13.56	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms