RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-222ENST00000600320 NEXMIFQ5QGS0 1516 aa29.09■■■□□ 2.25
SHKBP1-222ENST00000600320 LTKP29376 864 aa29.06■■■□□ 2.24
SHKBP1-222ENST00000600320 NUTM2DQ5VT03 806 aaPredicted RBP29.06■■■□□ 2.24
SHKBP1-222ENST00000600320 TXNDC2Q86VQ3 553 aa29.04■■■□□ 2.24
SHKBP1-222ENST00000600320 RPGRIP1LQ68CZ1 1315 aa29.03■■■□□ 2.24
SHKBP1-222ENST00000600320 NCKAP5LQ9HCH0 1330 aa29.03■■■□□ 2.24
SHKBP1-222ENST00000600320 PPLO60437 1756 aa29.03■■■□□ 2.24
SHKBP1-222ENST00000600320 IFT172Q9UG01 1749 aa29.03■■■□□ 2.24
SHKBP1-222ENST00000600320 SCAF11Q99590 1463 aaKnown RBP29.02■■■□□ 2.24
SHKBP1-222ENST00000600320 ANKLE2Q86XL3 938 aa29.01■■■□□ 2.23
SHKBP1-222ENST00000600320 STRCQ7RTU9 1775 aa29.01■■■□□ 2.23
SHKBP1-222ENST00000600320 EID1Q9Y6B2 187 aa28.99■■■□□ 2.23
SHKBP1-222ENST00000600320 POLR1AO95602 1720 aaPredicted RBP28.99■■■□□ 2.23
SHKBP1-222ENST00000600320 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.98■■■□□ 2.23
SHKBP1-222ENST00000600320 L3MBTL2Q969R5 705 aa28.98■■■□□ 2.23
SHKBP1-222ENST00000600320 PPP1R15AO75807 674 aaPredicted RBP28.95■■■□□ 2.22
SHKBP1-222ENST00000600320 HDGFP51858 240 aaKnown RBP28.95■■■□□ 2.22
SHKBP1-222ENST00000600320 DCAF11Q8TEB1 546 aa28.95■■■□□ 2.22
SHKBP1-222ENST00000600320 SENP3Q9H4L4 574 aaPredicted RBP28.95■■■□□ 2.22
SHKBP1-222ENST00000600320 ADGRF5Q8IZF2 1346 aa28.94■■■□□ 2.22
SHKBP1-222ENST00000600320 TONSLQ96HA7 1378 aa28.94■■■□□ 2.22
SHKBP1-222ENST00000600320 KDM2AQ9Y2K7 1162 aa28.94■■■□□ 2.22
SHKBP1-222ENST00000600320 MYOM2P54296 1465 aa28.93■■■□□ 2.22
SHKBP1-222ENST00000600320 MED14O60244 1454 aa28.92■■■□□ 2.22
SHKBP1-222ENST00000600320 NPHP4O75161 1426 aaPredicted RBP28.92■■■□□ 2.22
SHKBP1-222ENST00000600320 PLEKHG1Q9ULL1 1385 aa28.91■■■□□ 2.22
SHKBP1-222ENST00000600320 VGFO15240 615 aaPredicted RBP28.91■■■□□ 2.22
SHKBP1-222ENST00000600320 NRXN1Q9ULB1 1477 aa28.89■■■□□ 2.22
SHKBP1-222ENST00000600320 NRXN3Q9Y4C0 1643 aa28.87■■■□□ 2.21
SHKBP1-222ENST00000600320 IQGAP1P46940 1657 aa28.87■■■□□ 2.21
SHKBP1-222ENST00000600320 ADAMTS13Q76LX8 1427 aa28.85■■■□□ 2.21
SHKBP1-222ENST00000600320 SETBP1Q9Y6X0 1596 aa28.84■■■□□ 2.21
SHKBP1-222ENST00000600320 PIK3C2GO75747 1445 aa28.84■■■□□ 2.21
SHKBP1-222ENST00000600320 BCANQ96GW7 911 aa28.83■■■□□ 2.21
SHKBP1-222ENST00000600320 STAC3Q96MF2 364 aa28.83■■■□□ 2.21
SHKBP1-222ENST00000600320 PRAG1Q86YV5 1406 aa28.81■■■□□ 2.2
SHKBP1-222ENST00000600320 SLC26A8Q96RN1 970 aa28.81■■■□□ 2.2
SHKBP1-222ENST00000600320 TIMELESSQ9UNS1 1208 aa28.81■■■□□ 2.2
SHKBP1-222ENST00000600320 ALKQ9UM73 1620 aa28.78■■■□□ 2.2
SHKBP1-222ENST00000600320 NBPF8Q3BBV2 869 aa28.77■■■□□ 2.2
SHKBP1-222ENST00000600320 SETD1AO15047 1707 aaKnown RBP28.77■■■□□ 2.2
SHKBP1-222ENST00000600320 CFAP70Q5T0N1 1121 aa28.76■■■□□ 2.19
SHKBP1-222ENST00000600320 TBX22Q9Y458 520 aa28.75■■■□□ 2.19
SHKBP1-222ENST00000600320 DMRT2Q9Y5R5 561 aa28.75■■■□□ 2.19
SHKBP1-222ENST00000600320 C14orf93Q9H972 538 aaKnown RBP28.74■■■□□ 2.19
SHKBP1-222ENST00000600320 DIP2AQ14689 1571 aa28.74■■■□□ 2.19
SHKBP1-222ENST00000600320 ASXL1Q8IXJ9 1541 aa28.72■■■□□ 2.19
SHKBP1-222ENST00000600320 METP08581 1390 aa28.72■■■□□ 2.19
SHKBP1-222ENST00000600320 LAMC1P11047 1609 aa28.69■■■□□ 2.18
SHKBP1-222ENST00000600320 FBXO41Q8TF61 875 aa28.67■■■□□ 2.18
SHKBP1-222ENST00000600320 PTPRUQ92729 1446 aa28.67■■■□□ 2.18
SHKBP1-222ENST00000600320 KIAA1210Q9ULL0 1709 aa28.66■■■□□ 2.18
SHKBP1-222ENST00000600320 TRPM1Q7Z4N2 1603 aa28.66■■■□□ 2.18
SHKBP1-222ENST00000600320 TMEM132EQ6IEE7 984 aa28.66■■■□□ 2.18
SHKBP1-222ENST00000600320 NBPF1Q3BBV0 1214 aa28.65■■■□□ 2.18
SHKBP1-222ENST00000600320 ADGRB1O14514 1584 aa28.65■■■□□ 2.18
SHKBP1-222ENST00000600320 ZNF335Q9H4Z2 1342 aaPredicted RBP28.63■■■□□ 2.17
SHKBP1-222ENST00000600320 PIK3R4Q99570 1358 aa28.62■■■□□ 2.17
SHKBP1-222ENST00000600320 STRCP1A6NGW2 1772 aa28.61■■■□□ 2.17
SHKBP1-222ENST00000600320 CHD2O14647 1828 aaKnown RBP28.61■■■□□ 2.17
SHKBP1-222ENST00000600320 RALGAPBQ86X10 1494 aa28.6■■■□□ 2.17
SHKBP1-222ENST00000600320 NWD1Q149M9 1564 aa28.59■■■□□ 2.17
SHKBP1-222ENST00000600320 KCNA6P17658 529 aa28.59■■■□□ 2.17
SHKBP1-222ENST00000600320 AMOTL2Q9Y2J4 779 aa28.58■■■□□ 2.17
SHKBP1-222ENST00000600320 XRN1Q8IZH2 1706 aaKnown RBP28.57■■■□□ 2.16
SHKBP1-222ENST00000600320 LRPPRCP42704 1394 aaKnown RBP28.57■■■□□ 2.16
SHKBP1-222ENST00000600320 YTHDC2Q9H6S0 1430 aaKnown RBP28.57■■■□□ 2.16
SHKBP1-222ENST00000600320 ROCK2O75116 1388 aaKnown RBP28.55■■■□□ 2.16
SHKBP1-222ENST00000600320 STK26Q9P289 416 aa28.55■■■□□ 2.16
SHKBP1-222ENST00000600320 GPRASP1Q5JY77 1395 aa28.54■■■□□ 2.16
SHKBP1-222ENST00000600320 LTBP4Q8N2S1 1624 aa28.52■■■□□ 2.16
SHKBP1-222ENST00000600320 ABCC11Q96J66 1382 aa28.51■■■□□ 2.16
SHKBP1-222ENST00000600320 KNDC1Q76NI1 1749 aa28.51■■■□□ 2.15
SHKBP1-222ENST00000600320 TECPR2O15040 1411 aa28.5■■■□□ 2.15
SHKBP1-222ENST00000600320 TRAK1Q9UPV9 953 aa28.49■■■□□ 2.15
SHKBP1-222ENST00000600320 ROBO2Q9HCK4 1378 aa28.49■■■□□ 2.15
SHKBP1-222ENST00000600320 NKTRP30414 1462 aaKnown RBP28.48■■■□□ 2.15
SHKBP1-222ENST00000600320 CPS1P31327 1500 aa28.48■■■□□ 2.15
SHKBP1-222ENST00000600320 CARD11Q9BXL7 1154 aa28.47■■■□□ 2.15
SHKBP1-222ENST00000600320 PTCH1Q13635 1447 aa28.46■■■□□ 2.15
SHKBP1-222ENST00000600320 DLC1Q96QB1 1528 aa28.45■■■□□ 2.15
SHKBP1-222ENST00000600320 ZEB1P37275 1124 aaPredicted RBP28.44■■■□□ 2.14
SHKBP1-222ENST00000600320 RBM33Q96EV2 1170 aaKnown RBP28.44■■■□□ 2.14
SHKBP1-222ENST00000600320 PLEKHH1Q9ULM0 1364 aa28.44■■■□□ 2.14
SHKBP1-222ENST00000600320 LRRC7Q96NW7 1537 aa28.43■■■□□ 2.14
SHKBP1-222ENST00000600320 PROSER2Q86WR7 435 aaPredicted RBP28.43■■■□□ 2.14
SHKBP1-222ENST00000600320 ARHGEF28Q8N1W1 1705 aaKnown RBP28.43■■■□□ 2.14
SHKBP1-222ENST00000600320 WAPLQ7Z5K2 1190 aa28.42■■■□□ 2.14
SHKBP1-222ENST00000600320 SIRT1Q96EB6 747 aa28.4■■■□□ 2.14
SHKBP1-222ENST00000600320 FAM135BQ49AJ0 1406 aa28.4■■■□□ 2.14
SHKBP1-222ENST00000600320 TMEM94Q12767 1356 aa28.39■■■□□ 2.14
SHKBP1-222ENST00000600320 PRAM1Q96QH2 718 aa28.39■■■□□ 2.14
SHKBP1-222ENST00000600320 XIRP1Q702N8 1843 aaKnown RBP28.37■■■□□ 2.13
SHKBP1-222ENST00000600320 CERKQ8TCT0 537 aa28.36■■■□□ 2.13
SHKBP1-222ENST00000600320 SAFB2Q14151 953 aaKnown RBP eCLIP28.35■■■□□ 2.13
SHKBP1-222ENST00000600320 POGKQ9P215 609 aa28.34■■■□□ 2.13
SHKBP1-222ENST00000600320 USP47Q96K76 1375 aa28.34■■■□□ 2.13
SHKBP1-222ENST00000600320 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.33■■■□□ 2.13
SHKBP1-222ENST00000600320 CENPJQ9HC77 1338 aaPredicted RBP28.31■■■□□ 2.12
SHKBP1-222ENST00000600320 NALCNQ8IZF0 1738 aa28.3■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms