RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, human

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-222	ENST00000600320	NEXMIF	Q5QGS0	1516 aa		29.09	■■■□□ 2.25
SHKBP1-222	ENST00000600320	LTK	P29376	864 aa		29.06	■■■□□ 2.24
SHKBP1-222	ENST00000600320	NUTM2D	Q5VT03	806 aa	Predicted RBP	29.06	■■■□□ 2.24
SHKBP1-222	ENST00000600320	TXNDC2	Q86VQ3	553 aa		29.04	■■■□□ 2.24
SHKBP1-222	ENST00000600320	RPGRIP1L	Q68CZ1	1315 aa		29.03	■■■□□ 2.24
SHKBP1-222	ENST00000600320	NCKAP5L	Q9HCH0	1330 aa		29.03	■■■□□ 2.24
SHKBP1-222	ENST00000600320	PPL	O60437	1756 aa		29.03	■■■□□ 2.24
SHKBP1-222	ENST00000600320	IFT172	Q9UG01	1749 aa		29.03	■■■□□ 2.24
SHKBP1-222	ENST00000600320	SCAF11	Q99590	1463 aa	Known RBP	29.02	■■■□□ 2.24
SHKBP1-222	ENST00000600320	ANKLE2	Q86XL3	938 aa		29.01	■■■□□ 2.23
SHKBP1-222	ENST00000600320	STRC	Q7RTU9	1775 aa		29.01	■■■□□ 2.23
SHKBP1-222	ENST00000600320	EID1	Q9Y6B2	187 aa		28.99	■■■□□ 2.23
SHKBP1-222	ENST00000600320	POLR1A	O95602	1720 aa	Predicted RBP	28.99	■■■□□ 2.23
SHKBP1-222	ENST00000600320	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	28.98	■■■□□ 2.23
SHKBP1-222	ENST00000600320	L3MBTL2	Q969R5	705 aa		28.98	■■■□□ 2.23
SHKBP1-222	ENST00000600320	PPP1R15A	O75807	674 aa	Predicted RBP	28.95	■■■□□ 2.22
SHKBP1-222	ENST00000600320	HDGF	P51858	240 aa	Known RBP	28.95	■■■□□ 2.22
SHKBP1-222	ENST00000600320	DCAF11	Q8TEB1	546 aa		28.95	■■■□□ 2.22
SHKBP1-222	ENST00000600320	SENP3	Q9H4L4	574 aa	Predicted RBP	28.95	■■■□□ 2.22
SHKBP1-222	ENST00000600320	ADGRF5	Q8IZF2	1346 aa		28.94	■■■□□ 2.22
SHKBP1-222	ENST00000600320	TONSL	Q96HA7	1378 aa		28.94	■■■□□ 2.22
SHKBP1-222	ENST00000600320	KDM2A	Q9Y2K7	1162 aa		28.94	■■■□□ 2.22
SHKBP1-222	ENST00000600320	MYOM2	P54296	1465 aa		28.93	■■■□□ 2.22
SHKBP1-222	ENST00000600320	MED14	O60244	1454 aa		28.92	■■■□□ 2.22
SHKBP1-222	ENST00000600320	NPHP4	O75161	1426 aa	Predicted RBP	28.92	■■■□□ 2.22
SHKBP1-222	ENST00000600320	PLEKHG1	Q9ULL1	1385 aa		28.91	■■■□□ 2.22
SHKBP1-222	ENST00000600320	VGF	O15240	615 aa	Predicted RBP	28.91	■■■□□ 2.22
SHKBP1-222	ENST00000600320	NRXN1	Q9ULB1	1477 aa		28.89	■■■□□ 2.22
SHKBP1-222	ENST00000600320	NRXN3	Q9Y4C0	1643 aa		28.87	■■■□□ 2.21
SHKBP1-222	ENST00000600320	IQGAP1	P46940	1657 aa		28.87	■■■□□ 2.21
SHKBP1-222	ENST00000600320	ADAMTS13	Q76LX8	1427 aa		28.85	■■■□□ 2.21
SHKBP1-222	ENST00000600320	SETBP1	Q9Y6X0	1596 aa		28.84	■■■□□ 2.21
SHKBP1-222	ENST00000600320	PIK3C2G	O75747	1445 aa		28.84	■■■□□ 2.21
SHKBP1-222	ENST00000600320	BCAN	Q96GW7	911 aa		28.83	■■■□□ 2.21
SHKBP1-222	ENST00000600320	STAC3	Q96MF2	364 aa		28.83	■■■□□ 2.21
SHKBP1-222	ENST00000600320	PRAG1	Q86YV5	1406 aa		28.81	■■■□□ 2.2
SHKBP1-222	ENST00000600320	SLC26A8	Q96RN1	970 aa		28.81	■■■□□ 2.2
SHKBP1-222	ENST00000600320	TIMELESS	Q9UNS1	1208 aa		28.81	■■■□□ 2.2
SHKBP1-222	ENST00000600320	ALK	Q9UM73	1620 aa		28.78	■■■□□ 2.2
SHKBP1-222	ENST00000600320	NBPF8	Q3BBV2	869 aa		28.77	■■■□□ 2.2
SHKBP1-222	ENST00000600320	SETD1A	O15047	1707 aa	Known RBP	28.77	■■■□□ 2.2
SHKBP1-222	ENST00000600320	CFAP70	Q5T0N1	1121 aa		28.76	■■■□□ 2.19
SHKBP1-222	ENST00000600320	TBX22	Q9Y458	520 aa		28.75	■■■□□ 2.19
SHKBP1-222	ENST00000600320	DMRT2	Q9Y5R5	561 aa		28.75	■■■□□ 2.19
SHKBP1-222	ENST00000600320	C14orf93	Q9H972	538 aa	Known RBP	28.74	■■■□□ 2.19
SHKBP1-222	ENST00000600320	DIP2A	Q14689	1571 aa		28.74	■■■□□ 2.19
SHKBP1-222	ENST00000600320	ASXL1	Q8IXJ9	1541 aa		28.72	■■■□□ 2.19
SHKBP1-222	ENST00000600320	MET	P08581	1390 aa		28.72	■■■□□ 2.19
SHKBP1-222	ENST00000600320	LAMC1	P11047	1609 aa		28.69	■■■□□ 2.18
SHKBP1-222	ENST00000600320	FBXO41	Q8TF61	875 aa		28.67	■■■□□ 2.18
SHKBP1-222	ENST00000600320	PTPRU	Q92729	1446 aa		28.67	■■■□□ 2.18
SHKBP1-222	ENST00000600320	KIAA1210	Q9ULL0	1709 aa		28.66	■■■□□ 2.18
SHKBP1-222	ENST00000600320	TRPM1	Q7Z4N2	1603 aa		28.66	■■■□□ 2.18
SHKBP1-222	ENST00000600320	TMEM132E	Q6IEE7	984 aa		28.66	■■■□□ 2.18
SHKBP1-222	ENST00000600320	NBPF1	Q3BBV0	1214 aa		28.65	■■■□□ 2.18
SHKBP1-222	ENST00000600320	ADGRB1	O14514	1584 aa		28.65	■■■□□ 2.18
SHKBP1-222	ENST00000600320	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	28.63	■■■□□ 2.17
SHKBP1-222	ENST00000600320	PIK3R4	Q99570	1358 aa		28.62	■■■□□ 2.17
SHKBP1-222	ENST00000600320	STRCP1	A6NGW2	1772 aa		28.61	■■■□□ 2.17
SHKBP1-222	ENST00000600320	CHD2	O14647	1828 aa	Known RBP	28.61	■■■□□ 2.17
SHKBP1-222	ENST00000600320	RALGAPB	Q86X10	1494 aa		28.6	■■■□□ 2.17
SHKBP1-222	ENST00000600320	NWD1	Q149M9	1564 aa		28.59	■■■□□ 2.17
SHKBP1-222	ENST00000600320	KCNA6	P17658	529 aa		28.59	■■■□□ 2.17
SHKBP1-222	ENST00000600320	AMOTL2	Q9Y2J4	779 aa		28.58	■■■□□ 2.17
SHKBP1-222	ENST00000600320	XRN1	Q8IZH2	1706 aa	Known RBP	28.57	■■■□□ 2.16
SHKBP1-222	ENST00000600320	LRPPRC	P42704	1394 aa	Known RBP	28.57	■■■□□ 2.16
SHKBP1-222	ENST00000600320	YTHDC2	Q9H6S0	1430 aa	Known RBP	28.57	■■■□□ 2.16
SHKBP1-222	ENST00000600320	ROCK2	O75116	1388 aa	Known RBP	28.55	■■■□□ 2.16
SHKBP1-222	ENST00000600320	STK26	Q9P289	416 aa		28.55	■■■□□ 2.16
SHKBP1-222	ENST00000600320	GPRASP1	Q5JY77	1395 aa		28.54	■■■□□ 2.16
SHKBP1-222	ENST00000600320	LTBP4	Q8N2S1	1624 aa		28.52	■■■□□ 2.16
SHKBP1-222	ENST00000600320	ABCC11	Q96J66	1382 aa		28.51	■■■□□ 2.16
SHKBP1-222	ENST00000600320	KNDC1	Q76NI1	1749 aa		28.51	■■■□□ 2.15
SHKBP1-222	ENST00000600320	TECPR2	O15040	1411 aa		28.5	■■■□□ 2.15
SHKBP1-222	ENST00000600320	TRAK1	Q9UPV9	953 aa		28.49	■■■□□ 2.15
SHKBP1-222	ENST00000600320	ROBO2	Q9HCK4	1378 aa		28.49	■■■□□ 2.15
SHKBP1-222	ENST00000600320	NKTR	P30414	1462 aa	Known RBP	28.48	■■■□□ 2.15
SHKBP1-222	ENST00000600320	CPS1	P31327	1500 aa		28.48	■■■□□ 2.15
SHKBP1-222	ENST00000600320	CARD11	Q9BXL7	1154 aa		28.47	■■■□□ 2.15
SHKBP1-222	ENST00000600320	PTCH1	Q13635	1447 aa		28.46	■■■□□ 2.15
SHKBP1-222	ENST00000600320	DLC1	Q96QB1	1528 aa		28.45	■■■□□ 2.15
SHKBP1-222	ENST00000600320	ZEB1	P37275	1124 aa	Predicted RBP	28.44	■■■□□ 2.14
SHKBP1-222	ENST00000600320	RBM33	Q96EV2	1170 aa	Known RBP	28.44	■■■□□ 2.14
SHKBP1-222	ENST00000600320	PLEKHH1	Q9ULM0	1364 aa		28.44	■■■□□ 2.14
SHKBP1-222	ENST00000600320	LRRC7	Q96NW7	1537 aa		28.43	■■■□□ 2.14
SHKBP1-222	ENST00000600320	PROSER2	Q86WR7	435 aa	Predicted RBP	28.43	■■■□□ 2.14
SHKBP1-222	ENST00000600320	ARHGEF28	Q8N1W1	1705 aa	Known RBP	28.43	■■■□□ 2.14
SHKBP1-222	ENST00000600320	WAPL	Q7Z5K2	1190 aa		28.42	■■■□□ 2.14
SHKBP1-222	ENST00000600320	SIRT1	Q96EB6	747 aa		28.4	■■■□□ 2.14
SHKBP1-222	ENST00000600320	FAM135B	Q49AJ0	1406 aa		28.4	■■■□□ 2.14
SHKBP1-222	ENST00000600320	TMEM94	Q12767	1356 aa		28.39	■■■□□ 2.14
SHKBP1-222	ENST00000600320	PRAM1	Q96QH2	718 aa		28.39	■■■□□ 2.14
SHKBP1-222	ENST00000600320	XIRP1	Q702N8	1843 aa	Known RBP	28.37	■■■□□ 2.13
SHKBP1-222	ENST00000600320	CERK	Q8TCT0	537 aa		28.36	■■■□□ 2.13
SHKBP1-222	ENST00000600320	SAFB2	Q14151	953 aa	Known RBP eCLIP	28.35	■■■□□ 2.13
SHKBP1-222	ENST00000600320	POGK	Q9P215	609 aa		28.34	■■■□□ 2.13
SHKBP1-222	ENST00000600320	USP47	Q96K76	1375 aa		28.34	■■■□□ 2.13
SHKBP1-222	ENST00000600320	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	28.33	■■■□□ 2.13
SHKBP1-222	ENST00000600320	CENPJ	Q9HC77	1338 aa	Predicted RBP	28.31	■■■□□ 2.12
SHKBP1-222	ENST00000600320	NALCN	Q8IZF0	1738 aa		28.3	■■■□□ 2.12

Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms