RNA–Protein interactions for RNA: ENST00000600026.5

LTBP4-227, Transcript of latent transforming growth factor beta binding protein 4, human

TSL 3

Gene LTBP4, Length 723 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LTBP4-227	ENST00000600026	RIMS2	Q9UQ26	1411 aa		32.06	■■■□□ 2.72
LTBP4-227	ENST00000600026	SPATA31E1	Q6ZUB1	1445 aa		32.05	■■■□□ 2.72
LTBP4-227	ENST00000600026	NEXMIF	Q5QGS0	1516 aa		32.04	■■■□□ 2.72
LTBP4-227	ENST00000600026	ANKLE2	Q86XL3	938 aa		32.03	■■■□□ 2.72
LTBP4-227	ENST00000600026	PPL	O60437	1756 aa		32.02	■■■□□ 2.72
LTBP4-227	ENST00000600026	IQGAP1	P46940	1657 aa		32.02	■■■□□ 2.72
LTBP4-227	ENST00000600026	IFT172	Q9UG01	1749 aa		32.01	■■■□□ 2.72
LTBP4-227	ENST00000600026	ZNF326	Q5BKZ1	582 aa	Known RBP	32.01	■■■□□ 2.71
LTBP4-227	ENST00000600026	DISP3	Q9P2K9	1392 aa		32.01	■■■□□ 2.71
LTBP4-227	ENST00000600026	MED14	O60244	1454 aa		32	■■■□□ 2.71
LTBP4-227	ENST00000600026	LTK	P29376	864 aa		32	■■■□□ 2.71
LTBP4-227	ENST00000600026	TXNDC2	Q86VQ3	553 aa		31.99	■■■□□ 2.71
LTBP4-227	ENST00000600026	EID1	Q9Y6B2	187 aa		31.99	■■■□□ 2.71
LTBP4-227	ENST00000600026	CLSPN	Q9HAW4	1339 aa		31.97	■■■□□ 2.71
LTBP4-227	ENST00000600026	NPHP4	O75161	1426 aa	Predicted RBP	31.96	■■■□□ 2.71
LTBP4-227	ENST00000600026	SOCS7	O14512	581 aa		31.92	■■■□□ 2.7
LTBP4-227	ENST00000600026	HDGF	P51858	240 aa	Known RBP	31.92	■■■□□ 2.7
LTBP4-227	ENST00000600026	RGL3	Q3MIN7	710 aa		31.92	■■■□□ 2.7
LTBP4-227	ENST00000600026	NUTM2D	Q5VT03	806 aa	Predicted RBP	31.92	■■■□□ 2.7
LTBP4-227	ENST00000600026	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	31.92	■■■□□ 2.7	9e-7	■□□□□ 8
LTBP4-227	ENST00000600026	PPP1R15A	O75807	674 aa	Predicted RBP	31.91	■■■□□ 2.7
LTBP4-227	ENST00000600026	RPGRIP1L	Q68CZ1	1315 aa		31.91	■■■□□ 2.7
LTBP4-227	ENST00000600026	DMRT2	Q9Y5R5	561 aa		31.9	■■■□□ 2.7
LTBP4-227	ENST00000600026	PLEKHG1	Q9ULL1	1385 aa		31.89	■■■□□ 2.7
LTBP4-227	ENST00000600026	SIN3A	Q96ST3	1273 aa		31.88	■■■□□ 2.69
LTBP4-227	ENST00000600026	NRXN3	Q9Y4C0	1643 aa		31.86	■■■□□ 2.69
LTBP4-227	ENST00000600026	SETBP1	Q9Y6X0	1596 aa		31.84	■■■□□ 2.69
LTBP4-227	ENST00000600026	MYOM2	P54296	1465 aa		31.81	■■■□□ 2.68
LTBP4-227	ENST00000600026	NEUROD1	Q13562	356 aa		31.8	■■■□□ 2.68
LTBP4-227	ENST00000600026	SENP3	Q9H4L4	574 aa	Predicted RBP	31.8	■■■□□ 2.68
LTBP4-227	ENST00000600026	DIP2A	Q14689	1571 aa		31.79	■■■□□ 2.68
LTBP4-227	ENST00000600026	VGF	O15240	615 aa	Predicted RBP	31.78	■■■□□ 2.68
LTBP4-227	ENST00000600026	BCAN	Q96GW7	911 aa		31.78	■■■□□ 2.68
LTBP4-227	ENST00000600026	ADAMTS13	Q76LX8	1427 aa		31.77	■■■□□ 2.68
LTBP4-227	ENST00000600026	SETD1A	O15047	1707 aa	Known RBP	31.75	■■■□□ 2.67
LTBP4-227	ENST00000600026	ADGRF5	Q8IZF2	1346 aa		31.75	■■■□□ 2.67
LTBP4-227	ENST00000600026	NRXN1	Q9ULB1	1477 aa		31.74	■■■□□ 2.67
LTBP4-227	ENST00000600026	SLC26A8	Q96RN1	970 aa		31.74	■■■□□ 2.67
LTBP4-227	ENST00000600026	DCAF11	Q8TEB1	546 aa		31.71	■■■□□ 2.67
LTBP4-227	ENST00000600026	PIK3C2G	O75747	1445 aa		31.71	■■■□□ 2.67
LTBP4-227	ENST00000600026	STRCP1	A6NGW2	1772 aa		31.7	■■■□□ 2.67
LTBP4-227	ENST00000600026	ALK	Q9UM73	1620 aa		31.7	■■■□□ 2.66
LTBP4-227	ENST00000600026	KDM2A	Q9Y2K7	1162 aa		31.67	■■■□□ 2.66
LTBP4-227	ENST00000600026	TBX22	Q9Y458	520 aa		31.67	■■■□□ 2.66
LTBP4-227	ENST00000600026	CHD2	O14647	1828 aa	Known RBP	31.67	■■■□□ 2.66
LTBP4-227	ENST00000600026	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	31.67	■■■□□ 2.66
LTBP4-227	ENST00000600026	LAMC1	P11047	1609 aa		31.67	■■■□□ 2.66
LTBP4-227	ENST00000600026	L3MBTL2	Q969R5	705 aa		31.66	■■■□□ 2.66
LTBP4-227	ENST00000600026	NWD1	Q149M9	1564 aa		31.65	■■■□□ 2.66
LTBP4-227	ENST00000600026	LTBP4	Q8N2S1	1624 aa		31.64	■■■□□ 2.66
LTBP4-227	ENST00000600026	TONSL	Q96HA7	1378 aa		31.64	■■■□□ 2.66
LTBP4-227	ENST00000600026	STAC3	Q96MF2	364 aa		31.63	■■■□□ 2.65
LTBP4-227	ENST00000600026	ASXL1	Q8IXJ9	1541 aa		31.59	■■■□□ 2.65
LTBP4-227	ENST00000600026	MET	P08581	1390 aa		31.59	■■■□□ 2.65
LTBP4-227	ENST00000600026	PIK3R4	Q99570	1358 aa		31.59	■■■□□ 2.65
LTBP4-227	ENST00000600026	TIMELESS	Q9UNS1	1208 aa		31.58	■■■□□ 2.65
LTBP4-227	ENST00000600026	XRN1	Q8IZH2	1706 aa	Known RBP	31.58	■■■□□ 2.65
LTBP4-227	ENST00000600026	PRAG1	Q86YV5	1406 aa		31.58	■■■□□ 2.65
LTBP4-227	ENST00000600026	CPS1	P31327	1500 aa		31.57	■■■□□ 2.64
LTBP4-227	ENST00000600026	KIAA1210	Q9ULL0	1709 aa		31.56	■■■□□ 2.64
LTBP4-227	ENST00000600026	PTPRU	Q92729	1446 aa		31.56	■■■□□ 2.64
LTBP4-227	ENST00000600026	ZEB1	P37275	1124 aa	Predicted RBP	31.55	■■■□□ 2.64
LTBP4-227	ENST00000600026	KCNA6	P17658	529 aa		31.54	■■■□□ 2.64
LTBP4-227	ENST00000600026	C14orf93	Q9H972	538 aa	Known RBP	31.53	■■■□□ 2.64
LTBP4-227	ENST00000600026	NKTR	P30414	1462 aa	Known RBP	31.52	■■■□□ 2.64
LTBP4-227	ENST00000600026	CFAP70	Q5T0N1	1121 aa		31.52	■■■□□ 2.64
LTBP4-227	ENST00000600026	ADGRB1	O14514	1584 aa		31.49	■■■□□ 2.63
LTBP4-227	ENST00000600026	KNDC1	Q76NI1	1749 aa		31.49	■■■□□ 2.63
LTBP4-227	ENST00000600026	TRPM1	Q7Z4N2	1603 aa		31.49	■■■□□ 2.63
LTBP4-227	ENST00000600026	XIRP1	Q702N8	1843 aa	Known RBP	31.47	■■■□□ 2.63
LTBP4-227	ENST00000600026	LRRC7	Q96NW7	1537 aa		31.46	■■■□□ 2.63
LTBP4-227	ENST00000600026	AMOTL2	Q9Y2J4	779 aa		31.46	■■■□□ 2.63
LTBP4-227	ENST00000600026	TMEM132E	Q6IEE7	984 aa		31.45	■■■□□ 2.63
LTBP4-227	ENST00000600026	YTHDC2	Q9H6S0	1430 aa	Known RBP	31.42	■■■□□ 2.62
LTBP4-227	ENST00000600026	LRPPRC	P42704	1394 aa	Known RBP	31.42	■■■□□ 2.62
LTBP4-227	ENST00000600026	NBPF8	Q3BBV2	869 aa		31.4	■■■□□ 2.62
LTBP4-227	ENST00000600026	PTCH1	Q13635	1447 aa		31.4	■■■□□ 2.62
LTBP4-227	ENST00000600026	TECPR2	O15040	1411 aa		31.39	■■■□□ 2.62
LTBP4-227	ENST00000600026	IQSEC2	Q5JU85	1478 aa		31.39	■■■□□ 2.62
LTBP4-227	ENST00000600026	TMEM94	Q12767	1356 aa		31.36	■■■□□ 2.61
LTBP4-227	ENST00000600026	ABCC11	Q96J66	1382 aa		31.36	■■■□□ 2.61
LTBP4-227	ENST00000600026	UBAP1L	F5GYI3	381 aa		31.36	■■■□□ 2.61
LTBP4-227	ENST00000600026	PROSER2	Q86WR7	435 aa	Predicted RBP	31.36	■■■□□ 2.61
LTBP4-227	ENST00000600026	STK26	Q9P289	416 aa		31.35	■■■□□ 2.61
LTBP4-227	ENST00000600026	RALGAPB	Q86X10	1494 aa		31.34	■■■□□ 2.61
LTBP4-227	ENST00000600026	ROBO2	Q9HCK4	1378 aa		31.34	■■■□□ 2.61
LTBP4-227	ENST00000600026	NBPF1	Q3BBV0	1214 aa		31.34	■■■□□ 2.61
LTBP4-227	ENST00000600026	ARHGEF28	Q8N1W1	1705 aa	Known RBP	31.34	■■■□□ 2.61
LTBP4-227	ENST00000600026	DLC1	Q96QB1	1528 aa		31.33	■■■□□ 2.61
LTBP4-227	ENST00000600026	RBM33	Q96EV2	1170 aa	Known RBP	31.32	■■■□□ 2.6
LTBP4-227	ENST00000600026	NALCN	Q8IZF0	1738 aa		31.3	■■■□□ 2.6
LTBP4-227	ENST00000600026	ROCK2	O75116	1388 aa	Known RBP	31.29	■■■□□ 2.6
LTBP4-227	ENST00000600026	NCOA3	Q9Y6Q9	1424 aa		31.27	■■■□□ 2.6
LTBP4-227	ENST00000600026	FAM135B	Q49AJ0	1406 aa		31.26	■■■□□ 2.6
LTBP4-227	ENST00000600026	TRAK1	Q9UPV9	953 aa		31.26	■■■□□ 2.59
LTBP4-227	ENST00000600026	GPRASP1	Q5JY77	1395 aa		31.26	■■■□□ 2.59
LTBP4-227	ENST00000600026	PLEKHH1	Q9ULM0	1364 aa		31.24	■■■□□ 2.59
LTBP4-227	ENST00000600026	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	31.24	■■■□□ 2.59
LTBP4-227	ENST00000600026	SIRT1	Q96EB6	747 aa		31.22	■■■□□ 2.59
LTBP4-227	ENST00000600026	ADGRL3	Q9HAR2	1447 aa		31.22	■■■□□ 2.59

Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms