RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 MYT1Q01538 1121 aa23.59■■□□□ 1.37
SHKBP1-216ENST00000598201 NEURL4Q96JN8 1562 aa23.58■■□□□ 1.37
SHKBP1-216ENST00000598201 PRKRIP1Q9H875 184 aaPredicted RBP23.58■■□□□ 1.36
SHKBP1-216ENST00000598201 ARHGAP31Q2M1Z3 1444 aa23.57■■□□□ 1.36
SHKBP1-216ENST00000598201 C3P01024 1663 aa23.56■■□□□ 1.36
SHKBP1-216ENST00000598201 FBXO31Q5XUX0 539 aaPredicted RBP23.55■■□□□ 1.36
SHKBP1-216ENST00000598201 STAC3Q96MF2 364 aa23.55■■□□□ 1.36
SHKBP1-216ENST00000598201 CFAP65Q6ZU64 1925 aaKnown RBP23.54■■□□□ 1.36
SHKBP1-216ENST00000598201 KIF1BO60333 1816 aa23.53■■□□□ 1.36
SHKBP1-216ENST00000598201 TESK2Q96S53 571 aa23.52■■□□□ 1.36
SHKBP1-216ENST00000598201 CCDC184Q52MB2 194 aa23.52■■□□□ 1.35
SHKBP1-216ENST00000598201 ADGRB3O60242 1522 aa23.49■■□□□ 1.35
SHKBP1-216ENST00000598201 MYOM2P54296 1465 aa23.48■■□□□ 1.35
SHKBP1-216ENST00000598201 ADGRF5Q8IZF2 1346 aa23.48■■□□□ 1.35
SHKBP1-216ENST00000598201 NOS1P29475 1434 aa23.48■■□□□ 1.35
SHKBP1-216ENST00000598201 IFT172Q9UG01 1749 aa23.47■■□□□ 1.35
SHKBP1-216ENST00000598201 ERVK-7P63135 1459 aa23.47■■□□□ 1.35
SHKBP1-216ENST00000598201 DISP3Q9P2K9 1392 aa23.46■■□□□ 1.35
SHKBP1-216ENST00000598201 CHGAP10645 457 aaKnown RBP23.46■■□□□ 1.35
SHKBP1-216ENST00000598201 IQGAP1P46940 1657 aa23.45■■□□□ 1.34
SHKBP1-216ENST00000598201 PREX1Q8TCU6 1659 aa23.45■■□□□ 1.34
SHKBP1-216ENST00000598201 SPATA31D1Q6ZQQ2 1576 aa23.44■■□□□ 1.34
SHKBP1-216ENST00000598201 TNRQ92752 1358 aa23.43■■□□□ 1.34
SHKBP1-216ENST00000598201 SYNMO15061 1565 aa23.43■■□□□ 1.34
SHKBP1-216ENST00000598201 SCAF11Q99590 1463 aaKnown RBP23.42■■□□□ 1.34
SHKBP1-216ENST00000598201 CNGB1Q14028 1251 aaPredicted RBP23.42■■□□□ 1.34
SHKBP1-216ENST00000598201 CFAP70Q5T0N1 1121 aa23.42■■□□□ 1.34
SHKBP1-216ENST00000598201 KIAA1210Q9ULL0 1709 aa23.42■■□□□ 1.34
SHKBP1-216ENST00000598201 NRXN1Q9ULB1 1477 aa23.42■■□□□ 1.34
SHKBP1-216ENST00000598201 SETD1BQ9UPS6 1966 aaKnown RBP23.4■■□□□ 1.34
SHKBP1-216ENST00000598201 PIK3C2BO00750 1634 aa23.4■■□□□ 1.34
SHKBP1-216ENST00000598201 MRS2Q9HD23 443 aa23.39■■□□□ 1.33
SHKBP1-216ENST00000598201 TMF1P82094 1093 aa23.38■■□□□ 1.33
SHKBP1-216ENST00000598201 SLC52A1Q9NWF4 448 aa23.37■■□□□ 1.33
SHKBP1-216ENST00000598201 AEBP2Q6ZN18 517 aaPredicted RBP23.37■■□□□ 1.33
SHKBP1-216ENST00000598201 PPLO60437 1756 aa23.36■■□□□ 1.33
SHKBP1-216ENST00000598201 IDI1Q13907 227 aa23.36■■□□□ 1.33
SHKBP1-216ENST00000598201 NLRP1Q9C000 1473 aa23.33■■□□□ 1.33
SHKBP1-216ENST00000598201 RPGRIP1LQ68CZ1 1315 aa23.33■■□□□ 1.33
SHKBP1-216ENST00000598201 PIK3C2GO75747 1445 aa23.32■■□□□ 1.32
SHKBP1-216ENST00000598201 MYO3AQ8NEV4 1616 aa23.32■■□□□ 1.32
SHKBP1-216ENST00000598201 HNRNPUQ00839 825 aaKnown RBP eCLIP23.31■■□□□ 1.32
SHKBP1-216ENST00000598201 PER1O15534 1290 aaPredicted RBP23.31■■□□□ 1.32
SHKBP1-216ENST00000598201 FAM9BQ8IZU0 186 aa23.31■■□□□ 1.32
SHKBP1-216ENST00000598201 EIF3AQ14152 1382 aaKnown RBP23.3■■□□□ 1.32
SHKBP1-216ENST00000598201 C14orf93Q9H972 538 aaKnown RBP23.28■■□□□ 1.32
SHKBP1-216ENST00000598201 STAG3Q9UJ98 1225 aa23.28■■□□□ 1.32
SHKBP1-216ENST00000598201 A2ML1A8K2U0 1454 aa23.28■■□□□ 1.32
SHKBP1-216ENST00000598201 NEXMIFQ5QGS0 1516 aa23.28■■□□□ 1.32
SHKBP1-216ENST00000598201 NUTM2DQ5VT03 806 aaPredicted RBP23.28■■□□□ 1.32
SHKBP1-216ENST00000598201 PANK3Q9H999 370 aa23.28■■□□□ 1.32
SHKBP1-216ENST00000598201 CEP170BQ9Y4F5 1589 aaPredicted RBP23.27■■□□□ 1.32
SHKBP1-216ENST00000598201 SETBP1Q9Y6X0 1596 aa23.26■■□□□ 1.31
SHKBP1-216ENST00000598201 LMTK3Q96Q04 1460 aa23.24■■□□□ 1.31
SHKBP1-216ENST00000598201 ZNF142P52746 1687 aaPredicted RBP23.24■■□□□ 1.31
SHKBP1-216ENST00000598201 ADGRB1O14514 1584 aa23.23■■□□□ 1.31
SHKBP1-216ENST00000598201 RALBP1Q15311 655 aa23.23■■□□□ 1.31
SHKBP1-216ENST00000598201 THEMISQ8N1K5 641 aaPredicted RBP23.23■■□□□ 1.31
SHKBP1-216ENST00000598201 KTN1Q86UP2 1357 aaKnown RBP23.23■■□□□ 1.31
SHKBP1-216ENST00000598201 TMEM131LA2VDJ0 1609 aa23.22■■□□□ 1.31
SHKBP1-216ENST00000598201 VGFO15240 615 aaPredicted RBP23.22■■□□□ 1.31
SHKBP1-216ENST00000598201 MYO5BQ9ULV0 1848 aa23.22■■□□□ 1.31
SHKBP1-216ENST00000598201 TMEM132EQ6IEE7 984 aa23.21■■□□□ 1.31
SHKBP1-216ENST00000598201 CDCA8Q53HL2 280 aa23.21■■□□□ 1.31
SHKBP1-216ENST00000598201 MYBBP1AQ9BQG0 1328 aaKnown RBP23.21■■□□□ 1.31
SHKBP1-216ENST00000598201 PARD3Q8TEW0 1356 aa23.21■■□□□ 1.31
SHKBP1-216ENST00000598201 UBR1Q8IWV7 1749 aa23.2■■□□□ 1.31
SHKBP1-216ENST00000598201 HSPA2P54652 639 aa23.2■■□□□ 1.3
SHKBP1-216ENST00000598201 TRAK1Q9UPV9 953 aa23.19■■□□□ 1.3
SHKBP1-216ENST00000598201 KDM5AP29375 1690 aaKnown RBP23.19■■□□□ 1.3
SHKBP1-216ENST00000598201 ZFYVE9O95405 1425 aa23.17■■□□□ 1.3
SHKBP1-216ENST00000598201 CC2D1BQ5T0F9 858 aaKnown RBP23.17■■□□□ 1.3
SHKBP1-216ENST00000598201 TMC1Q8TDI8 760 aa23.17■■□□□ 1.3
SHKBP1-216ENST00000598201 PNISRQ8TF01 805 aaKnown RBP23.16■■□□□ 1.3
SHKBP1-216ENST00000598201 MYOM1P52179 1685 aa23.16■■□□□ 1.3
SHKBP1-216ENST00000598201 BRD4O60885 1362 aaPredicted RBP23.16■■□□□ 1.3
SHKBP1-216ENST00000598201 CENPJQ9HC77 1338 aaPredicted RBP23.15■■□□□ 1.3
SHKBP1-216ENST00000598201 SBNO2Q9Y2G9 1366 aa23.14■■□□□ 1.3
SHKBP1-216ENST00000598201 TMEM2Q9UHN6 1383 aa23.14■■□□□ 1.29
SHKBP1-216ENST00000598201 SLC24A1O60721 1099 aa23.13■■□□□ 1.29
SHKBP1-216ENST00000598201 SENP3Q9H4L4 574 aaPredicted RBP23.13■■□□□ 1.29
SHKBP1-216ENST00000598201 SUPT16HQ9Y5B9 1047 aaKnown RBP23.12■■□□□ 1.29
SHKBP1-216ENST00000598201 NLRP13Q86W25 1043 aa23.1■■□□□ 1.29
SHKBP1-216ENST00000598201 SLIT1O75093 1534 aa23.1■■□□□ 1.29
SHKBP1-216ENST00000598201 HDGFP51858 240 aaKnown RBP23.1■■□□□ 1.29
SHKBP1-216ENST00000598201 ANKLE2Q86XL3 938 aa23.1■■□□□ 1.29
SHKBP1-216ENST00000598201 ZBED9Q6R2W3 1325 aa23.1■■□□□ 1.29
SHKBP1-216ENST00000598201 ARHGAP23Q9P227 1491 aa23.09■■□□□ 1.29
SHKBP1-216ENST00000598201 TXNDC2Q86VQ3 553 aa23.09■■□□□ 1.29
SHKBP1-216ENST00000598201 EID1Q9Y6B2 187 aa23.09■■□□□ 1.29
SHKBP1-216ENST00000598201 QRICH2Q9H0J4 1663 aa23.09■■□□□ 1.29
SHKBP1-216ENST00000598201 RIMS2Q9UQ26 1411 aa23.09■■□□□ 1.29
SHKBP1-216ENST00000598201 KNSTRNQ9Y448 316 aa23.09■■□□□ 1.29
SHKBP1-216ENST00000598201 ASXL1Q8IXJ9 1541 aa23.08■■□□□ 1.29
SHKBP1-216ENST00000598201 LTKP29376 864 aa23.08■■□□□ 1.29
SHKBP1-216ENST00000598201 AMER1Q5JTC6 1135 aaPredicted RBP23.07■■□□□ 1.28
SHKBP1-216ENST00000598201 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.07■■□□□ 1.28
SHKBP1-216ENST00000598201 LRPPRCP42704 1394 aaKnown RBP23.06■■□□□ 1.28
SHKBP1-216ENST00000598201 NCKAP5LQ9HCH0 1330 aa23.06■■□□□ 1.28
SHKBP1-216ENST00000598201 ARHGEF28Q8N1W1 1705 aaKnown RBP23.05■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms