RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 ABCC5O15440 1437 aa14.24□□□□□ -0.13
TRIM28-208ENST00000597172 CFAP65Q6ZU64 1925 aaKnown RBP14.23□□□□□ -0.13
TRIM28-208ENST00000597172 RSPH4AQ5TD94 716 aa14.23□□□□□ -0.13
TRIM28-208ENST00000597172 C8orf37Q96NL8 207 aa14.23□□□□□ -0.13
TRIM28-208ENST00000597172 ERVK-7P63135 1459 aa14.23□□□□□ -0.13
TRIM28-208ENST00000597172 DAPK1P53355 1430 aa14.22□□□□□ -0.13
TRIM28-208ENST00000597172 ABCC3O15438 1527 aa14.21□□□□□ -0.13
TRIM28-208ENST00000597172 EP400Q96L91 3159 aa14.21□□□□□ -0.13
TRIM28-208ENST00000597172 NKTRP30414 1462 aaKnown RBP14.21□□□□□ -0.13
TRIM28-208ENST00000597172 CHIC2Q9UKJ5 165 aa14.2□□□□□ -0.14
TRIM28-208ENST00000597172 ARHGEF5Q12774 1597 aa14.2□□□□□ -0.14
TRIM28-208ENST00000597172 AHDC1Q5TGY3 1603 aaPredicted RBP14.19□□□□□ -0.14
TRIM28-208ENST00000597172 TMEM2Q9UHN6 1383 aa14.19□□□□□ -0.14
TRIM28-208ENST00000597172 LRP5O75197 1615 aa14.19□□□□□ -0.14
TRIM28-208ENST00000597172 TSPY4P0CV99 314 aa14.18□□□□□ -0.14
TRIM28-208ENST00000597172 TSPY10P0CW01 314 aa14.18□□□□□ -0.14
TRIM28-208ENST00000597172 YY1P25490 414 aa14.18□□□□□ -0.14
TRIM28-208ENST00000597172 CCDC141Q6ZP82 1450 aa14.18□□□□□ -0.14
TRIM28-208ENST00000597172 STAG3Q9UJ98 1225 aa14.17□□□□□ -0.14
TRIM28-208ENST00000597172 C14orf37Q86TY3 774 aa14.16□□□□□ -0.14
TRIM28-208ENST00000597172 KDM5AP29375 1690 aaKnown RBP14.15□□□□□ -0.14
TRIM28-208ENST00000597172 CADPS2Q86UW7 1296 aa14.15□□□□□ -0.14
TRIM28-208ENST00000597172 RRP7BPQ9NSQ0 103 aa14.15□□□□□ -0.14
TRIM28-208ENST00000597172 DIP2AQ14689 1571 aa14.14□□□□□ -0.15
TRIM28-208ENST00000597172 NWD1Q149M9 1564 aa14.14□□□□□ -0.15
TRIM28-208ENST00000597172 ROCK1Q13464 1354 aa14.14□□□□□ -0.15
TRIM28-208ENST00000597172 ATF3P18847 181 aa14.14□□□□□ -0.15
TRIM28-208ENST00000597172 BCANQ96GW7 911 aa14.14□□□□□ -0.15
TRIM28-208ENST00000597172 TET3O43151 1660 aa14.14□□□□□ -0.15
TRIM28-208ENST00000597172 BRINP3Q76B58 766 aa14.13□□□□□ -0.15
TRIM28-208ENST00000597172 TRPC5Q9UL62 973 aaPredicted RBP14.13□□□□□ -0.15
TRIM28-208ENST00000597172 LRRC59Q96AG4 307 aaKnown RBP14.12□□□□□ -0.15
TRIM28-208ENST00000597172 C19orf44Q9H6X5 657 aa14.12□□□□□ -0.15
TRIM28-208ENST00000597172 ADGRL2O95490 1459 aa14.12□□□□□ -0.15
TRIM28-208ENST00000597172 CROCC2H7BZ55 1655 aa14.11□□□□□ -0.15
TRIM28-208ENST00000597172 ADAMTS2O95450 1211 aa14.11□□□□□ -0.15
TRIM28-208ENST00000597172 USP21Q9UK80 565 aa14.11□□□□□ -0.15
TRIM28-208ENST00000597172 MAST1Q9Y2H9 1570 aa14.11□□□□□ -0.15
TRIM28-208ENST00000597172 NCOA3Q9Y6Q9 1424 aa14.11□□□□□ -0.15
TRIM28-208ENST00000597172 ANKRD30AQ9BXX3 1397 aa14.1□□□□□ -0.15
TRIM28-208ENST00000597172 NAIPQ13075 1403 aa14.1□□□□□ -0.15
TRIM28-208ENST00000597172 SETD5Q9C0A6 1442 aa14.1□□□□□ -0.15
TRIM28-208ENST00000597172 DEFB132Q7Z7B7 95 aa14.1□□□□□ -0.15
TRIM28-208ENST00000597172 HFM1A2PYH4 1435 aa14.09□□□□□ -0.15
TRIM28-208ENST00000597172 HRCP23327 699 aa14.09□□□□□ -0.15
TRIM28-208ENST00000597172 PSDA5PKW4 1024 aaPredicted RBP14.07□□□□□ -0.16
TRIM28-208ENST00000597172 BLMP54132 1417 aaPredicted RBP14.07□□□□□ -0.16
TRIM28-208ENST00000597172 PIK3C2BO00750 1634 aa14.06□□□□□ -0.16
TRIM28-208ENST00000597172 RAB3GAP2Q9H2M9 1393 aa14.06□□□□□ -0.16
TRIM28-208ENST00000597172 KIF15Q9NS87 1388 aa14.06□□□□□ -0.16
TRIM28-208ENST00000597172 SF3B2Q13435 895 aaKnown RBP14.05□□□□□ -0.16
TRIM28-208ENST00000597172 IDI1Q13907 227 aa14.05□□□□□ -0.16
TRIM28-208ENST00000597172 PNPLA6Q8IY17 1366 aa14.05□□□□□ -0.16
TRIM28-208ENST00000597172 EFCAB6Q5THR3 1501 aa14.05□□□□□ -0.16
TRIM28-208ENST00000597172 NHSL1Q5SYE7 1610 aa14.04□□□□□ -0.16
TRIM28-208ENST00000597172 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.04□□□□□ -0.16
TRIM28-208ENST00000597172 CHD2O14647 1828 aaKnown RBP14.04□□□□□ -0.16
TRIM28-208ENST00000597172 FNBP4Q8N3X1 1017 aaPredicted RBP14.04□□□□□ -0.16
TRIM28-208ENST00000597172 ATRNO75882 1429 aa14.03□□□□□ -0.16
TRIM28-208ENST00000597172 ARHGAP31Q2M1Z3 1444 aa14.02□□□□□ -0.16
TRIM28-208ENST00000597172 ANKRD50Q9ULJ7 1429 aa14.02□□□□□ -0.16
TRIM28-208ENST00000597172 CEP152O94986 1710 aa14.01□□□□□ -0.17
TRIM28-208ENST00000597172 MROH1Q8NDA8 1641 aa14.01□□□□□ -0.17
TRIM28-208ENST00000597172 DUOX2Q9NRD8 1548 aa14□□□□□ -0.17
TRIM28-208ENST00000597172 SENP3-EIF4A1A0A087X0R7 540 aa14□□□□□ -0.17
TRIM28-208ENST00000597172 DDX17Q92841 729 aaKnown RBP14□□□□□ -0.17
TRIM28-208ENST00000597172 TBX22Q9Y458 520 aa14□□□□□ -0.17
TRIM28-208ENST00000597172 GCC2Q8IWJ2 1684 aa14□□□□□ -0.17
TRIM28-208ENST00000597172 ASXL1Q8IXJ9 1541 aa14□□□□□ -0.17
TRIM28-208ENST00000597172 GJD4Q96KN9 370 aaPredicted RBP13.97□□□□□ -0.17
TRIM28-208ENST00000597172 BCL9LQ86UU0 1499 aa13.97□□□□□ -0.17
TRIM28-208ENST00000597172 ERBINQ96RT1 1412 aa13.97□□□□□ -0.17
TRIM28-208ENST00000597172 PLEKHG1Q9ULL1 1385 aa13.96□□□□□ -0.17
TRIM28-208ENST00000597172 PPP1R15AO75807 674 aaPredicted RBP13.96□□□□□ -0.17
TRIM28-208ENST00000597172 HDGFP51858 240 aaKnown RBP13.95□□□□□ -0.18
TRIM28-208ENST00000597172 EIF2AK4Q9P2K8 1649 aaKnown RBP13.94□□□□□ -0.18
TRIM28-208ENST00000597172 PTCH1Q13635 1447 aa13.94□□□□□ -0.18
TRIM28-208ENST00000597172 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.94□□□□□ -0.182e-10■■■□□ 15.8
TRIM28-208ENST00000597172 DCAF8L1A6NGE4 600 aa13.93□□□□□ -0.18
TRIM28-208ENST00000597172 ACIN1Q9UKV3 1341 aaKnown RBP13.92□□□□□ -0.18
TRIM28-208ENST00000597172 DCCP43146 1447 aa13.92□□□□□ -0.18
TRIM28-208ENST00000597172 R3HDM1Q15032 1099 aaKnown RBP13.92□□□□□ -0.18
TRIM28-208ENST00000597172 MST1RQ04912 1400 aa13.91□□□□□ -0.18
TRIM28-208ENST00000597172 BAG6P46379 1132 aa13.91□□□□□ -0.18
TRIM28-208ENST00000597172 NUP155O75694 1391 aa13.91□□□□□ -0.18
TRIM28-208ENST00000597172 DHX57Q6P158 1386 aaKnown RBP13.91□□□□□ -0.18
TRIM28-208ENST00000597172 MPHOSPH9Q99550 1183 aa13.9□□□□□ -0.18
TRIM28-208ENST00000597172 SLC52A1Q9NWF4 448 aa13.9□□□□□ -0.18
TRIM28-208ENST00000597172 AMOTL2Q9Y2J4 779 aa13.9□□□□□ -0.18
TRIM28-208ENST00000597172 ADGRB3O60242 1522 aa13.9□□□□□ -0.19
TRIM28-208ENST00000597172 PIK3R4Q99570 1358 aa13.89□□□□□ -0.19
TRIM28-208ENST00000597172 ZFYVE9O95405 1425 aa13.89□□□□□ -0.19
TRIM28-208ENST00000597172 UNC13BO14795 1591 aa13.88□□□□□ -0.19
TRIM28-208ENST00000597172 ZNF784Q8NCA9 323 aaPredicted RBP13.88□□□□□ -0.19
TRIM28-208ENST00000597172 RIMS2Q9UQ26 1411 aa13.88□□□□□ -0.19
TRIM28-208ENST00000597172 C1QTNF8P60827 252 aa13.87□□□□□ -0.19
TRIM28-208ENST00000597172 SLC4A1APQ9BWU0 796 aaKnown RBP13.87□□□□□ -0.19
TRIM28-208ENST00000597172 SEPT12Q8IYM1 358 aa13.86□□□□□ -0.19
TRIM28-208ENST00000597172 CCER1Q8TC90 406 aaPredicted RBP13.86□□□□□ -0.19
TRIM28-208ENST00000597172 KANK1Q14678 1352 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms